Wall clock time and date at job start Tue Mar 31 2020 13:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99981 * 2 1 4 4 H 1.48495 * 109.47543 * 90.00125 * 3 2 1 5 5 H 1.48508 * 109.46751 * 209.99885 * 3 2 1 6 6 H 1.48492 * 109.46968 * 329.99655 * 3 2 1 7 7 C 1.37877 * 119.99930 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99965 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99704 * 179.97438 * 7 2 1 10 10 C 1.53007 * 109.46553 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.46553 * 180.02562 * 10 9 7 12 12 O 1.21277 * 120.00389 * 0.02562 * 11 10 9 13 13 N 1.34781 * 119.99471 * 179.97438 * 11 10 9 14 14 C 1.46928 * 120.63345 * 354.58478 * 13 11 10 15 15 C 1.52758 * 109.00915 * 233.58186 * 14 13 11 16 16 C 1.53039 * 109.38481 * 305.59102 * 15 14 13 17 17 C 1.53039 * 109.53755 * 61.23858 * 16 15 14 18 18 C 1.46933 * 120.62750 * 174.86738 * 13 11 10 19 19 H 1.08997 * 109.58121 * 246.15702 * 18 13 11 20 20 C 1.52999 * 109.58696 * 6.43902 * 18 13 11 21 21 O 1.45198 * 109.47364 * 65.60634 * 20 18 13 22 22 C 1.34631 * 117.00420 * 179.97438 * 21 20 18 23 23 O 1.21515 * 119.99676 * 0.02562 * 22 21 20 24 24 N 1.34770 * 120.00563 * 180.02562 * 22 21 20 25 25 C 1.46502 * 120.00479 * 180.02562 * 24 22 21 26 26 C 1.52991 * 117.49934 * 223.74463 * 25 24 22 27 27 C 1.52998 * 117.50085 * 155.08503 * 25 24 22 28 28 H 0.96999 * 120.00026 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.47242 * 299.99845 * 9 7 2 30 30 H 1.08998 * 109.47324 * 60.00812 * 9 7 2 31 31 H 1.09001 * 109.47043 * 299.99750 * 10 9 7 32 32 H 1.08992 * 109.47450 * 60.00060 * 10 9 7 33 33 H 1.09002 * 109.58551 * 353.42087 * 14 13 11 34 34 H 1.09005 * 109.58343 * 113.84250 * 14 13 11 35 35 H 1.08997 * 109.56238 * 185.55205 * 15 14 13 36 36 H 1.09006 * 109.38233 * 65.51479 * 15 14 13 37 37 H 1.09000 * 109.45888 * 301.21785 * 16 15 14 38 38 H 1.09001 * 109.45728 * 181.26076 * 16 15 14 39 39 H 1.09000 * 109.49538 * 178.68352 * 17 16 15 40 40 H 1.08997 * 109.52668 * 58.60729 * 17 16 15 41 41 H 1.08995 * 109.46832 * 185.61158 * 20 18 13 42 42 H 1.09004 * 109.47152 * 305.61066 * 20 18 13 43 43 H 0.97002 * 119.99992 * 359.97438 * 24 22 21 44 44 H 1.08995 * 115.54704 * 9.41431 * 25 24 22 45 45 H 1.09001 * 117.50225 * 0.02562 * 26 25 24 46 46 H 1.08999 * 117.49785 * 145.01690 * 26 25 24 47 47 H 1.09003 * 117.50233 * 214.98050 * 27 25 24 48 48 H 1.09005 * 117.49726 * 0.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 1.4000 5 1 3.5468 1.4401 -0.7001 6 1 1.4466 2.6526 -0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6366 0.0001 11 6 5.5285 -2.6365 0.0001 12 8 6.1349 -1.5863 0.0005 13 7 6.2024 -3.8038 0.0008 14 6 5.4866 -5.0814 0.1207 15 6 6.0848 -5.8801 1.2774 16 6 7.5943 -6.0220 1.0696 17 6 8.2412 -4.6351 1.0526 18 6 7.6672 -3.8226 -0.1123 19 1 7.9548 -4.2844 -1.0568 20 6 8.2043 -2.3910 -0.0568 21 8 7.9412 -1.8258 1.2545 22 6 8.3544 -0.5627 1.4699 23 8 8.9191 0.0508 0.5860 24 7 8.1419 0.0213 2.6658 25 6 8.5910 1.3960 2.8999 26 6 9.2826 1.6961 4.2312 27 6 7.8616 2.2041 3.9749 28 1 -0.4850 0.8400 -0.0004 29 1 3.8745 -0.6808 -0.8905 30 1 3.8752 -0.6797 0.8895 31 1 3.6585 -3.1502 0.8903 32 1 3.6578 -3.1506 -0.8896 33 1 4.4312 -4.8919 0.3164 34 1 5.5929 -5.6479 -0.8044 35 1 5.6278 -6.8690 1.3128 36 1 5.8941 -5.3573 2.2147 37 1 7.7847 -6.5232 0.1206 38 1 8.0190 -6.6108 1.8827 39 1 9.3192 -4.7380 0.9280 40 1 8.0308 -4.1234 1.9917 41 1 9.2787 -2.3987 -0.2403 42 1 7.7100 -1.7877 -0.8182 43 1 7.6908 -0.4683 3.3713 44 1 8.9418 1.9324 2.0183 45 1 9.4039 0.8707 4.9327 46 1 10.0882 2.4304 4.2255 47 1 7.7328 3.2724 3.8008 48 1 7.0478 1.7128 4.5083 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495953003.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:34 Heat of formation + Delta-G solvation = -106.265841 kcal Electronic energy + Delta-G solvation = -29202.982964 eV Core-core repulsion = 25258.261770 eV Total energy + Delta-G solvation = -3944.721194 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.90344 -40.97351 -38.72991 -38.37951 -37.04571 -35.61539 -34.19974 -33.88229 -33.34329 -32.58037 -28.62278 -27.69589 -25.53777 -24.23521 -23.59653 -23.32723 -22.44264 -22.08811 -21.49658 -19.97640 -19.75175 -19.03619 -18.22002 -17.83788 -17.14601 -16.79413 -16.67618 -16.31582 -16.19536 -15.68413 -15.36078 -15.09995 -14.97863 -14.96085 -14.61888 -14.44878 -14.13336 -13.92329 -13.78924 -13.63888 -13.36613 -12.96709 -12.77974 -12.60150 -12.43805 -12.28012 -12.08273 -12.00360 -11.87372 -11.81326 -11.71522 -11.61829 -11.53024 -11.49085 -11.48475 -11.29926 -10.80983 -10.10601 -9.87278 -9.46334 -8.34663 -6.36440 1.17912 1.26833 1.29905 1.45445 1.73554 1.80602 2.02751 2.30671 2.92552 3.01212 3.14411 3.56707 3.70248 3.77430 3.92496 3.97585 4.01720 4.05353 4.17899 4.21688 4.31521 4.33960 4.37535 4.45131 4.58255 4.69868 4.71290 4.72649 4.78603 4.95066 4.96383 4.98009 5.01370 5.14467 5.15650 5.23560 5.25862 5.32022 5.37012 5.42067 5.50326 5.53034 5.58729 5.70793 6.21513 6.35750 6.45052 6.69793 7.28876 7.32402 7.35450 8.81130 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.007393 B = 0.005686 C = 0.003515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3786.320811 B = 4923.158959 C = 7964.657579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.020 3.980 3 Si 0.933 3.067 4 H -0.268 1.268 5 H -0.271 1.271 6 H -0.277 1.277 7 C -0.526 4.526 8 H 0.052 0.948 9 C 0.013 3.987 10 C -0.111 4.111 11 C 0.511 3.489 12 O -0.560 6.560 13 N -0.608 5.608 14 C 0.100 3.900 15 C -0.132 4.132 16 C -0.112 4.112 17 C -0.124 4.124 18 C 0.148 3.852 19 H 0.119 0.881 20 C 0.092 3.908 21 O -0.345 6.345 22 C 0.655 3.345 23 O -0.617 6.617 24 N -0.677 5.677 25 C 0.061 3.939 26 C -0.163 4.163 27 C -0.182 4.182 28 H 0.267 0.733 29 H 0.003 0.997 30 H 0.003 0.997 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.052 0.948 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.088 0.912 40 H 0.055 0.945 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.414 0.586 44 H 0.118 0.882 45 H 0.110 0.890 46 H 0.120 0.880 47 H 0.115 0.885 48 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.883 -11.571 7.306 24.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.178 4.178 3 Si 0.759 3.241 4 H -0.193 1.193 5 H -0.196 1.196 6 H -0.202 1.202 7 C -0.564 4.564 8 H 0.070 0.930 9 C -0.025 4.025 10 C -0.151 4.151 11 C 0.301 3.699 12 O -0.439 6.439 13 N -0.343 5.343 14 C -0.021 4.021 15 C -0.170 4.170 16 C -0.149 4.149 17 C -0.163 4.163 18 C 0.046 3.954 19 H 0.137 0.863 20 C 0.018 3.982 21 O -0.258 6.258 22 C 0.409 3.591 23 O -0.509 6.509 24 N -0.334 5.334 25 C -0.044 4.044 26 C -0.201 4.201 27 C -0.220 4.220 28 H 0.077 0.923 29 H 0.021 0.979 30 H 0.021 0.979 31 H 0.114 0.886 32 H 0.115 0.885 33 H 0.105 0.895 34 H 0.109 0.891 35 H 0.117 0.883 36 H 0.070 0.930 37 H 0.099 0.901 38 H 0.097 0.903 39 H 0.107 0.893 40 H 0.074 0.926 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.250 0.750 44 H 0.136 0.864 45 H 0.128 0.872 46 H 0.139 0.861 47 H 0.133 0.867 48 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 21.305 -10.718 6.800 24.800 hybrid contribution -0.471 1.004 0.050 1.110 sum 20.835 -9.714 6.849 23.987 Atomic orbital electron populations 1.70007 1.07572 1.28013 1.52552 1.25694 0.95384 1.02386 0.94360 0.85913 0.78983 0.80155 0.79089 1.19297 1.19558 1.20200 1.21418 0.91158 0.93692 1.50119 0.92955 1.19143 0.93922 0.93738 0.95737 1.21476 0.90013 0.99424 1.04188 1.21089 0.90697 0.83281 0.74786 1.90647 1.69368 1.33320 1.50584 1.48196 1.06517 1.06475 1.73106 1.21943 0.96913 0.82905 1.00368 1.21842 0.96709 1.00945 0.97515 1.21497 0.94481 0.95453 1.03501 1.21907 1.00800 0.96205 0.97355 1.21602 0.79703 0.92783 1.01324 0.86335 1.23179 0.98964 0.93299 0.82772 1.86163 1.75525 1.26308 1.37768 1.18164 0.76803 0.81100 0.83036 1.90884 1.49244 1.65761 1.45051 1.43893 1.62354 1.14665 1.12521 1.21607 1.05607 0.81759 0.95406 1.23558 0.95898 1.03855 0.96824 1.23536 0.96496 1.01133 1.00861 0.92346 0.97890 0.97889 0.88609 0.88548 0.89530 0.89102 0.88342 0.92955 0.90066 0.90319 0.89310 0.92626 0.91435 0.91429 0.75025 0.86425 0.87164 0.86134 0.86665 0.87900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.20 13.96 21.45 0.30 -58.90 16 2 C 0.02 1.19 5.47 84.65 0.46 1.65 16 3 Si 0.93 48.15 27.47 68.60 1.88 50.03 16 4 H -0.27 -13.30 7.11 99.48 0.71 -12.60 16 5 H -0.27 -14.30 6.54 99.48 0.65 -13.65 16 6 H -0.28 -13.64 7.11 99.48 0.71 -12.94 16 7 C -0.53 -30.67 9.66 25.60 0.25 -30.43 16 8 H 0.05 3.19 7.99 -2.91 -0.02 3.16 16 9 C 0.01 0.64 3.33 29.85 0.10 0.74 16 10 C -0.11 -4.31 4.05 29.85 0.12 -4.19 16 11 C 0.51 18.38 7.41 87.66 0.65 19.03 16 12 O -0.56 -24.34 9.91 20.58 0.20 -24.14 16 13 N -0.61 -15.55 2.98 -795.84 -2.37 -17.92 16 14 C 0.10 1.81 6.30 86.22 0.54 2.35 16 15 C -0.13 -1.85 6.06 30.53 0.19 -1.66 16 16 C -0.11 -1.32 5.89 30.62 0.18 -1.14 16 17 C -0.12 -2.07 5.26 30.67 0.16 -1.91 16 18 C 0.15 3.24 3.29 44.97 0.15 3.39 16 19 H 0.12 1.96 8.14 -2.39 -0.02 1.94 16 20 C 0.09 2.78 4.22 71.98 0.30 3.09 16 21 O -0.35 -11.66 7.25 -47.56 -0.34 -12.00 16 22 C 0.65 23.94 8.21 129.79 1.07 25.01 16 23 O -0.62 -26.47 15.70 19.79 0.31 -26.16 16 24 N -0.68 -19.72 5.57 -570.16 -3.18 -22.90 16 25 C 0.06 1.53 6.43 44.99 0.29 1.82 16 26 C -0.16 -2.67 10.46 30.61 0.32 -2.35 16 27 C -0.18 -3.50 10.46 30.62 0.32 -3.18 16 28 H 0.27 15.75 8.31 -92.71 -0.77 14.97 16 29 H 0.00 0.15 7.16 -2.39 -0.02 0.13 16 30 H 0.00 0.15 7.52 -2.39 -0.02 0.13 16 31 H 0.10 3.42 7.46 -2.39 -0.02 3.40 16 32 H 0.10 3.45 8.12 -2.39 -0.02 3.43 16 33 H 0.09 1.70 5.96 -2.39 -0.01 1.68 16 34 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 35 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 37 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.05 1.19 7.36 -2.39 -0.02 1.17 16 41 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.07 2.58 5.99 -4.55 -0.03 2.55 16 43 H 0.41 10.17 8.94 -92.71 -0.83 9.34 16 44 H 0.12 3.45 7.40 -2.39 -0.02 3.43 16 45 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 46 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 47 H 0.12 1.97 8.14 -2.39 -0.02 1.96 16 48 H 0.10 1.94 8.14 -2.38 -0.02 1.92 16 Total: -1.00 -81.14 380.00 1.97 -79.17 By element: Atomic # 1 Polarization: 20.53 SS G_CDS: 0.06 Total: 20.59 kcal Atomic # 6 Polarization: 7.12 SS G_CDS: 5.10 Total: 12.22 kcal Atomic # 7 Polarization: -94.47 SS G_CDS: -5.25 Total: -99.71 kcal Atomic # 8 Polarization: -62.47 SS G_CDS: 0.17 Total: -62.30 kcal Atomic # 14 Polarization: 48.15 SS G_CDS: 1.88 Total: 50.03 kcal Total: -81.14 1.97 -79.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495953003.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.096 kcal (2) G-P(sol) polarization free energy of solvation -81.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds