Wall clock time and date at job start Tue Mar 31 2020 13:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00123 * 2 1 4 4 H 1.48503 * 109.46865 * 179.97438 * 3 2 1 5 5 H 1.48490 * 109.47241 * 300.00228 * 3 2 1 6 6 H 1.48495 * 109.46764 * 60.00308 * 3 2 1 7 7 C 1.37880 * 119.99842 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99862 * 173.55157 * 7 2 1 9 9 C 1.50702 * 120.00133 * 353.54735 * 7 2 1 10 10 C 1.53003 * 115.54628 * 85.40724 * 9 7 2 11 11 N 1.46500 * 109.47040 * 65.14610 * 10 9 7 12 12 C 1.34772 * 119.99902 * 178.27868 * 11 10 9 13 13 O 1.21588 * 120.00094 * 0.02562 * 12 11 10 14 14 N 1.34783 * 119.99790 * 179.97438 * 12 11 10 15 15 C 1.46500 * 120.00042 * 179.97438 * 14 12 11 16 16 H 1.09009 * 109.55905 * 35.00135 * 15 14 12 17 17 C 1.53188 * 109.56458 * 274.78491 * 15 14 12 18 18 C 1.53079 * 109.29246 * 182.43537 * 17 15 14 19 19 O 1.43052 * 109.36003 * 58.22593 * 18 17 15 20 20 C 1.41976 * 114.26686 * 300.34274 * 19 18 17 21 21 C 1.54643 * 110.35079 * 296.17688 * 20 19 18 22 22 C 1.55062 * 100.87897 * 274.99686 * 21 20 19 23 23 O 1.43712 * 105.20086 * 324.20047 * 22 21 20 24 24 C 1.43412 * 109.93949 * 24.30347 * 23 22 21 25 25 C 1.52512 * 111.48025 * 58.87041 * 20 19 18 26 26 C 1.52993 * 117.50019 * 231.08012 * 9 7 2 27 27 C 1.52993 * 117.49740 * 299.74291 * 9 7 2 28 28 H 0.97009 * 119.99710 * 5.05605 * 1 2 3 29 29 H 1.09005 * 109.47218 * 305.14286 * 10 9 7 30 30 H 1.08997 * 109.46917 * 185.14606 * 10 9 7 31 31 H 0.97005 * 119.99660 * 358.28027 * 11 10 9 32 32 H 0.96996 * 119.99781 * 0.02562 * 14 12 11 33 33 H 1.09008 * 109.49997 * 302.38135 * 17 15 14 34 34 H 1.09003 * 109.50106 * 62.45072 * 17 15 14 35 35 H 1.08996 * 109.49336 * 178.19426 * 18 17 15 36 36 H 1.09001 * 109.49164 * 298.26496 * 18 17 15 37 37 H 1.08995 * 111.13999 * 32.90427 * 21 20 19 38 38 H 1.09002 * 111.13199 * 157.09867 * 21 20 19 39 39 H 1.08994 * 110.30270 * 205.26374 * 22 21 20 40 40 H 1.09007 * 110.29802 * 83.12512 * 22 21 20 41 41 H 1.08995 * 109.86190 * 238.38149 * 24 23 22 42 42 H 1.09002 * 109.85700 * 117.30330 * 24 23 22 43 43 H 1.09001 * 109.65498 * 184.58479 * 25 20 19 44 44 H 1.09005 * 109.48741 * 64.36985 * 25 20 19 45 45 H 1.08999 * 117.49858 * 215.00052 * 26 9 7 46 46 H 1.08994 * 117.49910 * 0.02562 * 26 9 7 47 47 H 1.09002 * 117.50243 * 359.97438 * 27 9 7 48 48 H 1.09003 * 117.50186 * 144.97239 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8904 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0793 -1.1970 -0.1056 9 6 1.2581 -2.4951 0.1456 10 6 0.7020 -3.0860 -1.1516 11 7 1.8110 -3.4585 -2.0334 12 6 1.5598 -4.0348 -3.2255 13 8 0.4127 -4.2452 -3.5693 14 7 2.5801 -4.3770 -4.0369 15 6 2.3071 -5.0040 -5.3325 16 1 1.3904 -4.5896 -5.7525 17 6 2.1483 -6.5163 -5.1472 18 6 1.9238 -7.1722 -6.5120 19 8 3.0288 -6.8725 -7.3697 20 6 3.2333 -5.4858 -7.5949 21 6 2.0219 -4.8774 -8.3391 22 6 2.3932 -5.1943 -9.8109 23 8 3.8222 -5.0566 -9.8769 24 6 4.3932 -5.2539 -8.5763 25 6 3.4758 -4.7376 -6.2883 26 6 1.7470 -3.4738 1.2151 27 6 0.4418 -2.7016 1.4229 28 1 -0.4850 0.8369 -0.0740 29 1 0.0753 -2.3456 -1.6488 30 1 0.1074 -3.9703 -0.9223 31 1 2.7262 -3.2902 -1.7592 32 1 3.4952 -4.2087 -3.7628 33 1 3.0509 -6.9238 -4.6917 34 1 1.2930 -6.7160 -4.5018 35 1 1.8425 -8.2520 -6.3876 36 1 1.0053 -6.7865 -6.9542 37 1 1.0947 -5.3734 -8.0522 38 1 1.9580 -3.8021 -8.1727 39 1 1.9134 -4.4834 -10.4835 40 1 2.0995 -6.2130 -10.0641 41 1 4.9567 -4.3689 -8.2811 42 1 5.0482 -6.1252 -8.5877 43 1 3.5478 -3.6681 -6.4861 44 1 4.4034 -5.0879 -5.8354 45 1 1.6725 -4.5387 0.9947 46 1 2.6082 -3.1765 1.8134 47 1 0.4448 -1.8966 2.1578 48 1 -0.4917 -3.2582 1.3392 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000562384367.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:25 Heat of formation + Delta-G solvation = -120.093732 kcal Electronic energy + Delta-G solvation = -28363.964780 eV Core-core repulsion = 24418.643964 eV Total energy + Delta-G solvation = -3945.320816 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.91918 -40.80915 -38.86395 -38.41723 -36.27049 -34.95322 -33.96796 -33.36385 -32.36363 -31.03896 -28.40314 -27.74493 -26.87964 -24.98713 -23.69626 -23.12161 -22.85416 -21.64504 -21.21288 -20.56771 -19.28752 -18.35545 -17.92249 -17.43456 -16.98506 -16.85200 -16.67788 -16.33831 -16.00882 -15.82506 -15.57881 -15.46426 -15.37464 -14.94933 -14.49952 -14.37252 -14.22348 -13.92565 -13.66297 -13.44712 -12.99125 -12.93690 -12.91738 -12.84287 -12.67957 -12.33341 -12.29609 -12.09236 -12.03728 -11.88379 -11.52649 -11.42529 -11.19715 -10.84805 -10.61422 -10.55837 -10.46200 -10.26707 -10.03921 -9.60094 -8.09292 -6.22322 1.41228 1.45295 1.54158 1.78170 2.24248 2.42745 2.54164 2.87132 3.18957 3.24511 3.35347 3.59199 3.66656 3.70599 3.80422 4.01098 4.07296 4.12003 4.21779 4.25866 4.30307 4.46359 4.55384 4.57166 4.63749 4.66455 4.70393 4.74932 4.79172 4.82133 4.87289 4.94021 4.98559 5.00493 5.01708 5.05678 5.18622 5.28116 5.55269 5.59944 5.62470 5.72213 5.79616 5.91156 6.15004 6.19836 6.37651 6.84948 7.24404 7.47186 7.69278 8.98352 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.017799 B = 0.002738 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.743493 B =10222.903737 C =11116.084445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.024 3.976 3 Si 0.949 3.051 4 H -0.260 1.260 5 H -0.288 1.288 6 H -0.286 1.286 7 C -0.503 4.503 8 H 0.064 0.936 9 C 0.007 3.993 10 C 0.201 3.799 11 N -0.715 5.715 12 C 0.697 3.303 13 O -0.644 6.644 14 N -0.729 5.729 15 C 0.165 3.835 16 H 0.067 0.933 17 C -0.162 4.162 18 C 0.065 3.935 19 O -0.371 6.371 20 C 0.092 3.908 21 C -0.188 4.188 22 C 0.055 3.945 23 O -0.402 6.402 24 C 0.066 3.934 25 C -0.136 4.136 26 C -0.175 4.175 27 C -0.160 4.160 28 H 0.258 0.742 29 H 0.025 0.975 30 H 0.031 0.969 31 H 0.406 0.594 32 H 0.410 0.590 33 H 0.082 0.918 34 H 0.061 0.939 35 H 0.116 0.884 36 H 0.058 0.942 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.098 0.902 40 H 0.065 0.935 41 H 0.102 0.898 42 H 0.083 0.917 43 H 0.093 0.907 44 H 0.098 0.902 45 H 0.088 0.912 46 H 0.086 0.914 47 H 0.063 0.937 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.183 -12.541 -14.907 21.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.176 4.176 3 Si 0.776 3.224 4 H -0.184 1.184 5 H -0.215 1.215 6 H -0.212 1.212 7 C -0.541 4.541 8 H 0.083 0.917 9 C 0.006 3.994 10 C 0.076 3.924 11 N -0.368 5.368 12 C 0.397 3.603 13 O -0.526 6.526 14 N -0.385 5.385 15 C 0.059 3.941 16 H 0.085 0.915 17 C -0.201 4.201 18 C -0.012 4.012 19 O -0.290 6.290 20 C 0.051 3.949 21 C -0.225 4.225 22 C -0.021 4.021 23 O -0.322 6.322 24 C -0.010 4.010 25 C -0.174 4.174 26 C -0.213 4.213 27 C -0.198 4.198 28 H 0.067 0.933 29 H 0.043 0.957 30 H 0.050 0.950 31 H 0.242 0.758 32 H 0.246 0.754 33 H 0.100 0.900 34 H 0.080 0.920 35 H 0.134 0.866 36 H 0.076 0.924 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.116 0.884 40 H 0.083 0.917 41 H 0.120 0.880 42 H 0.101 0.899 43 H 0.112 0.888 44 H 0.116 0.884 45 H 0.106 0.894 46 H 0.105 0.895 47 H 0.082 0.918 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 8.225 -12.685 -15.391 21.574 hybrid contribution 0.136 1.434 0.891 1.694 sum 8.361 -11.251 -14.500 20.168 Atomic orbital electron populations 1.70114 1.07292 1.27216 1.49912 1.25705 0.95436 1.02071 0.94433 0.85641 0.79558 0.80156 0.77061 1.18429 1.21463 1.21229 1.20689 0.93143 0.89523 1.50697 0.91740 1.19054 0.99645 0.94456 0.86258 1.20369 0.87013 0.95085 0.89948 1.44924 1.10978 1.63751 1.17189 1.16191 0.84860 0.78386 0.80877 1.90839 1.21923 1.63604 1.76275 1.44980 1.08242 1.66292 1.18989 1.20799 0.98743 0.92350 0.82166 0.91500 1.22568 1.03217 0.95457 0.98841 1.22711 0.88928 1.01636 0.87923 1.87818 1.51110 1.22266 1.67818 1.22368 0.95502 0.82458 0.94550 1.23885 0.99631 1.02969 0.96064 1.23447 0.80510 1.01767 0.96382 1.88421 1.20855 1.93242 1.29697 1.23148 0.94216 1.02846 0.80814 1.22271 0.98825 1.02127 0.94166 1.22999 0.97325 0.96236 1.04694 1.22435 0.93798 1.01430 1.02179 0.93277 0.95680 0.95049 0.75820 0.75372 0.89975 0.92030 0.86593 0.92419 0.89024 0.88977 0.88393 0.91721 0.87966 0.89889 0.88824 0.88364 0.89372 0.89515 0.91806 0.91187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.95 12.91 21.45 0.28 -50.67 16 2 C 0.02 1.27 5.39 84.66 0.46 1.72 16 3 Si 0.95 41.60 29.55 68.60 2.03 43.63 16 4 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 5 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 6 H -0.29 -12.57 7.11 99.48 0.71 -11.87 16 7 C -0.50 -25.14 8.63 25.60 0.22 -24.92 16 8 H 0.06 3.10 7.82 -2.91 -0.02 3.07 16 9 C 0.01 0.31 1.38 -52.93 -0.07 0.23 16 10 C 0.20 9.14 5.50 86.38 0.48 9.61 16 11 N -0.72 -26.77 5.48 -478.53 -2.62 -29.39 16 12 C 0.70 25.33 8.54 179.05 1.53 26.86 16 13 O -0.64 -28.95 16.01 -3.99 -0.06 -29.02 16 14 N -0.73 -18.38 5.09 -456.99 -2.33 -20.71 16 15 C 0.16 3.63 2.34 45.16 0.11 3.74 16 16 H 0.07 1.82 7.05 -2.38 -0.02 1.80 16 17 C -0.16 -3.29 5.69 30.68 0.17 -3.11 16 18 C 0.06 1.10 6.62 72.01 0.48 1.58 16 19 O -0.37 -6.83 10.24 -148.97 -1.53 -8.35 16 20 C 0.09 1.51 0.84 -10.16 -0.01 1.50 16 21 C -0.19 -3.07 5.32 31.86 0.17 -2.90 16 22 C 0.05 0.90 7.78 72.69 0.57 1.46 16 23 O -0.40 -8.04 11.37 -148.98 -1.69 -9.74 16 24 C 0.07 1.05 7.18 72.22 0.52 1.57 16 25 C -0.14 -2.13 4.22 30.54 0.13 -2.01 16 26 C -0.18 -6.80 9.96 30.62 0.30 -6.49 16 27 C -0.16 -7.20 9.42 30.62 0.29 -6.91 16 28 H 0.26 14.00 8.32 -92.70 -0.77 13.23 16 29 H 0.02 1.35 8.14 -2.38 -0.02 1.33 16 30 H 0.03 1.42 8.09 -2.39 -0.02 1.40 16 31 H 0.41 13.33 8.38 -92.70 -0.78 12.55 16 32 H 0.41 7.82 8.62 -92.71 -0.80 7.02 16 33 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 34 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.06 0.98 6.26 -2.39 -0.01 0.96 16 37 H 0.09 1.51 6.10 -2.39 -0.01 1.49 16 38 H 0.09 1.49 7.93 -2.39 -0.02 1.47 16 39 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 41 H 0.10 1.28 7.78 -2.39 -0.02 1.26 16 42 H 0.08 1.29 8.06 -2.39 -0.02 1.27 16 43 H 0.09 1.38 8.05 -2.39 -0.02 1.36 16 44 H 0.10 1.25 8.14 -2.38 -0.02 1.23 16 45 H 0.09 3.03 8.14 -2.39 -0.02 3.01 16 46 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 47 H 0.06 3.09 8.14 -2.39 -0.02 3.08 16 48 H 0.07 3.02 8.14 -2.39 -0.02 3.01 16 Total: -1.00 -66.40 382.79 -1.20 -67.60 By element: Atomic # 1 Polarization: 35.33 SS G_CDS: -0.60 Total: 34.73 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: 5.33 Total: 1.92 kcal Atomic # 7 Polarization: -96.10 SS G_CDS: -4.67 Total: -100.77 kcal Atomic # 8 Polarization: -43.82 SS G_CDS: -3.28 Total: -47.11 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.63 kcal Total: -66.40 -1.20 -67.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562384367.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.491 kcal (2) G-P(sol) polarization free energy of solvation -66.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds