Wall clock time and date at job start Tue Mar 31 2020 13:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86806 * 119.99920 * 2 1 4 4 H 1.48496 * 109.47093 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46790 * 300.00209 * 3 2 1 6 6 H 1.48501 * 109.47041 * 59.99849 * 3 2 1 7 7 C 1.37877 * 120.00305 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 174.22815 * 7 2 1 9 9 C 1.50699 * 119.99724 * 354.22920 * 7 2 1 10 10 C 1.53001 * 115.56217 * 80.46784 * 9 7 2 11 11 N 1.46497 * 109.47302 * 39.97236 * 10 9 7 12 12 C 1.34775 * 120.00164 * 186.35407 * 11 10 9 13 13 O 1.21591 * 119.99801 * 0.02562 * 12 11 10 14 14 N 1.34774 * 119.99953 * 179.97438 * 12 11 10 15 15 C 1.46503 * 120.00090 * 179.97438 * 14 12 11 16 16 H 1.09002 * 109.55577 * 324.78754 * 15 14 12 17 17 C 1.53183 * 109.56099 * 84.99806 * 15 14 12 18 18 C 1.53079 * 109.29194 * 177.44018 * 17 15 14 19 19 O 1.43061 * 109.36710 * 301.80592 * 18 17 15 20 20 C 1.41965 * 114.25325 * 59.66631 * 19 18 17 21 21 C 1.54614 * 110.39830 * 178.30716 * 20 19 18 22 22 C 1.55064 * 100.88635 * 274.98687 * 21 20 19 23 23 O 1.43715 * 105.20555 * 324.21007 * 22 21 20 24 24 C 1.43411 * 109.93500 * 24.30791 * 23 22 21 25 25 C 1.52274 * 111.40679 * 301.07235 * 20 19 18 26 26 C 1.53003 * 117.49992 * 294.77899 * 9 7 2 27 27 C 1.53004 * 117.49672 * 226.15690 * 9 7 2 28 28 H 0.96999 * 120.00111 * 5.02737 * 1 2 3 29 29 H 1.09002 * 109.47172 * 159.97125 * 10 9 7 30 30 H 1.09005 * 109.47231 * 279.96710 * 10 9 7 31 31 H 0.97003 * 120.00017 * 6.34992 * 11 10 9 32 32 H 0.97003 * 120.00228 * 359.97438 * 14 12 11 33 33 H 1.08999 * 109.50620 * 297.38698 * 17 15 14 34 34 H 1.09005 * 109.50191 * 57.49376 * 17 15 14 35 35 H 1.08998 * 109.48914 * 61.77186 * 18 17 15 36 36 H 1.08999 * 109.49553 * 181.83472 * 18 17 15 37 37 H 1.09002 * 111.13971 * 32.88883 * 21 20 19 38 38 H 1.08996 * 111.13672 * 157.08179 * 21 20 19 39 39 H 1.09000 * 110.29814 * 205.27732 * 22 21 20 40 40 H 1.08996 * 110.38133 * 83.18090 * 22 21 20 41 41 H 1.08995 * 109.86018 * 238.35858 * 24 23 22 42 42 H 1.09001 * 109.85765 * 117.28180 * 24 23 22 43 43 H 1.09000 * 109.51551 * 295.67070 * 25 20 19 44 44 H 1.09007 * 109.51560 * 175.52289 * 25 20 19 45 45 H 1.08995 * 117.50208 * 145.02335 * 26 9 7 46 46 H 1.08999 * 117.49574 * 0.02562 * 26 9 7 47 47 H 1.08999 * 117.49905 * 0.02562 * 27 9 7 48 48 H 1.08998 * 117.51478 * 214.96687 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0805 -1.1963 -0.0946 9 6 1.2569 -2.4959 0.1301 10 6 0.6133 -3.0194 -1.1554 11 7 1.5202 -2.7921 -2.2832 12 6 1.1120 -3.0566 -3.5402 13 8 -0.0092 -3.4835 -3.7381 14 7 1.9462 -2.8470 -4.5777 15 6 1.5027 -3.1351 -5.9440 16 1 0.8485 -4.0069 -5.9391 17 6 0.7434 -1.9274 -6.5021 18 6 0.3385 -2.2100 -7.9510 19 8 1.5093 -2.4847 -8.7259 20 6 2.2611 -3.5998 -8.2712 21 6 3.4783 -3.8413 -9.1935 22 6 2.8335 -4.7031 -10.3098 23 8 1.8659 -5.5269 -9.6384 24 6 1.4548 -4.9005 -8.4157 25 6 2.7217 -3.4101 -6.8322 26 6 0.5222 -2.7597 1.4461 27 6 1.8037 -3.5286 1.1178 28 1 -0.4850 0.8368 -0.0736 29 1 0.4184 -4.0872 -1.0554 30 1 -0.3252 -2.4939 -1.3321 31 1 2.4145 -2.4512 -2.1254 32 1 2.8403 -2.5054 -4.4200 33 1 -0.1496 -1.7502 -5.9027 34 1 1.3851 -1.0469 -6.4687 35 1 -0.3278 -3.0722 -7.9808 36 1 -0.1737 -1.3400 -8.3619 37 1 3.8608 -2.9022 -9.5936 38 1 4.2617 -4.3930 -8.6741 39 1 3.5887 -5.3237 -10.7922 40 1 2.3423 -4.0661 -11.0452 41 1 1.6625 -5.5604 -7.5735 42 1 0.3895 -4.6731 -8.4561 43 1 3.4094 -2.5661 -6.7783 44 1 3.2257 -4.3137 -6.4891 45 1 -0.4195 -3.3062 1.3960 46 1 0.5795 -1.9914 2.2171 47 1 2.7040 -3.2661 1.6734 48 1 1.7049 -4.5810 0.8521 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000562384377.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:37 Heat of formation + Delta-G solvation = -98.802991 kcal Electronic energy + Delta-G solvation = -28552.980470 eV Core-core repulsion = 24608.582890 eV Total energy + Delta-G solvation = -3944.397580 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.05683 -39.33864 -37.82595 -36.77188 -35.07680 -33.21144 -32.77891 -32.05241 -31.27995 -29.90854 -27.42440 -26.05522 -25.19907 -23.92578 -23.27127 -21.82037 -21.18876 -20.19775 -19.66755 -19.40706 -17.75679 -17.33162 -16.84177 -16.27246 -15.82622 -15.52378 -15.34607 -15.08710 -14.82277 -14.64754 -14.23825 -14.11087 -13.83434 -13.64916 -13.47205 -13.22172 -12.96485 -12.66323 -12.22598 -12.07602 -11.98634 -11.72872 -11.62833 -11.51718 -11.40555 -11.08665 -11.07699 -10.92661 -10.56759 -10.44669 -10.26647 -9.89505 -9.79179 -9.69172 -9.44011 -8.97211 -8.83873 -8.55879 -8.31293 -7.84747 -6.12585 -4.21920 3.16798 3.19816 3.29601 3.30562 3.33794 3.59021 3.83089 4.05695 4.29635 4.42841 4.49467 4.66971 4.69148 4.83613 4.87921 5.00839 5.02155 5.13681 5.18149 5.22274 5.28943 5.35093 5.40811 5.44993 5.52265 5.57801 5.65519 5.67981 5.80414 5.99023 6.03936 6.17845 6.29437 6.47669 6.56462 6.66606 6.69759 6.80236 6.89170 6.97163 7.06373 7.32634 7.38453 7.44585 7.64508 7.76195 8.30479 8.74468 8.80584 9.27617 9.45382 10.95151 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.018718 B = 0.002875 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.492981 B = 9736.355697 C =10385.982537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.077 3.923 3 Si 0.888 3.112 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.283 1.283 7 C -0.503 4.503 8 H 0.060 0.940 9 C 0.030 3.970 10 C 0.184 3.816 11 N -0.710 5.710 12 C 0.698 3.302 13 O -0.607 6.607 14 N -0.750 5.750 15 C 0.167 3.833 16 H 0.088 0.912 17 C -0.170 4.170 18 C 0.060 3.940 19 O -0.364 6.364 20 C 0.092 3.908 21 C -0.142 4.142 22 C 0.052 3.948 23 O -0.381 6.381 24 C 0.026 3.974 25 C -0.145 4.145 26 C -0.156 4.156 27 C -0.210 4.210 28 H 0.261 0.739 29 H 0.030 0.970 30 H 0.069 0.931 31 H 0.399 0.601 32 H 0.394 0.606 33 H 0.086 0.914 34 H 0.074 0.926 35 H 0.057 0.943 36 H 0.101 0.899 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.065 0.935 41 H 0.082 0.918 42 H 0.077 0.923 43 H 0.083 0.917 44 H 0.084 0.916 45 H 0.065 0.935 46 H 0.081 0.919 47 H 0.077 0.923 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.760 -6.021 -16.911 19.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.128 4.128 3 Si 0.715 3.285 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.209 1.209 7 C -0.541 4.541 8 H 0.078 0.922 9 C 0.029 3.971 10 C 0.060 3.940 11 N -0.363 5.363 12 C 0.398 3.602 13 O -0.487 6.487 14 N -0.405 5.405 15 C 0.061 3.939 16 H 0.106 0.894 17 C -0.209 4.209 18 C -0.016 4.016 19 O -0.283 6.283 20 C 0.051 3.949 21 C -0.179 4.179 22 C -0.024 4.024 23 O -0.301 6.301 24 C -0.051 4.051 25 C -0.183 4.183 26 C -0.194 4.194 27 C -0.248 4.248 28 H 0.071 0.929 29 H 0.049 0.951 30 H 0.087 0.913 31 H 0.234 0.766 32 H 0.227 0.773 33 H 0.104 0.896 34 H 0.092 0.908 35 H 0.075 0.925 36 H 0.119 0.881 37 H 0.114 0.886 38 H 0.112 0.888 39 H 0.104 0.896 40 H 0.083 0.917 41 H 0.100 0.900 42 H 0.095 0.905 43 H 0.101 0.899 44 H 0.103 0.897 45 H 0.084 0.916 46 H 0.100 0.900 47 H 0.095 0.905 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.515 -6.379 -17.191 19.147 hybrid contribution 1.113 1.550 0.640 2.012 sum 6.628 -4.830 -16.551 18.471 Atomic orbital electron populations 1.69981 1.05898 1.26799 1.47716 1.24976 0.94743 0.98844 0.94196 0.86617 0.80165 0.83982 0.77694 1.19700 1.21091 1.20919 1.20324 0.92647 0.88547 1.52546 0.92162 1.19053 0.97899 0.93645 0.86481 1.20697 0.92570 0.96282 0.84476 1.45074 1.18800 1.68429 1.03960 1.16040 0.84216 0.79007 0.80912 1.90851 1.19542 1.53614 1.84699 1.45112 1.17542 1.72851 1.05026 1.20670 0.94860 0.97951 0.80455 0.89407 1.22664 1.02562 0.99336 0.96306 1.22701 0.86911 1.01310 0.90707 1.87816 1.38562 1.47616 1.54267 1.22261 0.91966 0.86826 0.93799 1.23217 0.96359 1.01802 0.96560 1.23408 0.90964 0.93175 0.94862 1.88454 1.60732 1.45557 1.35316 1.23801 0.99687 0.93713 0.87907 1.22301 0.98600 1.03890 0.93514 1.22538 0.93086 1.01589 1.02217 1.23064 0.97991 0.95682 1.08030 0.92898 0.95135 0.91304 0.76586 0.77277 0.89565 0.90770 0.92504 0.88141 0.88640 0.88807 0.89636 0.91704 0.90010 0.90499 0.89884 0.89710 0.91635 0.90000 0.90451 0.91550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.73 13.11 55.43 0.73 -23.00 16 2 C 0.08 2.00 5.42 -17.82 -0.10 1.90 16 3 Si 0.89 20.02 29.54 -169.99 -5.02 15.00 16 4 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.50 -12.51 7.51 -34.44 -0.26 -12.77 16 8 H 0.06 1.47 7.82 -52.49 -0.41 1.06 16 9 C 0.03 0.69 1.63 -155.66 -0.25 0.44 16 10 C 0.18 4.17 5.76 -4.04 -0.02 4.14 16 11 N -0.71 -14.22 5.28 -65.22 -0.34 -14.56 16 12 C 0.70 13.51 8.53 -86.92 -0.74 12.77 16 13 O -0.61 -13.89 16.00 5.29 0.08 -13.81 16 14 N -0.75 -10.77 5.09 -58.42 -0.30 -11.07 16 15 C 0.17 2.09 2.35 -67.67 -0.16 1.93 16 16 H 0.09 1.24 7.12 -51.93 -0.37 0.87 16 17 C -0.17 -2.11 5.69 -26.60 -0.15 -2.27 16 18 C 0.06 0.64 6.61 37.20 0.25 0.88 16 19 O -0.36 -3.99 10.28 -35.23 -0.36 -4.35 16 20 C 0.09 0.89 0.80 -89.77 -0.07 0.82 16 21 C -0.14 -1.09 6.29 -24.79 -0.16 -1.25 16 22 C 0.05 0.44 7.78 38.25 0.30 0.74 16 23 O -0.38 -4.35 11.37 -35.23 -0.40 -4.75 16 24 C 0.03 0.27 6.27 37.53 0.24 0.50 16 25 C -0.14 -1.37 4.21 -26.94 -0.11 -1.48 16 26 C -0.16 -3.52 9.71 -26.73 -0.26 -3.77 16 27 C -0.21 -4.33 9.88 -26.73 -0.26 -4.59 16 28 H 0.26 6.90 8.32 -40.82 -0.34 6.56 16 29 H 0.03 0.67 7.95 -51.93 -0.41 0.26 16 30 H 0.07 1.80 8.12 -51.93 -0.42 1.37 16 31 H 0.40 7.45 7.61 -40.82 -0.31 7.14 16 32 H 0.39 4.70 8.62 -40.82 -0.35 4.35 16 33 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.06 0.59 6.36 -51.93 -0.33 0.25 16 36 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.09 0.59 8.00 -51.93 -0.42 0.18 16 39 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.08 0.82 7.69 -51.93 -0.40 0.42 16 42 H 0.08 0.83 6.14 -51.93 -0.32 0.51 16 43 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.08 0.72 8.01 -51.93 -0.42 0.31 16 45 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 46 H 0.08 1.95 8.14 -51.93 -0.42 1.52 16 47 H 0.08 1.56 8.14 -51.93 -0.42 1.13 16 48 H 0.07 1.25 8.09 -51.93 -0.42 0.83 16 LS Contribution 381.70 15.07 5.75 5.75 Total: -1.00 -30.53 381.70 -9.57 -40.10 By element: Atomic # 1 Polarization: 20.63 SS G_CDS: -7.94 Total: 12.69 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: -1.77 Total: -2.01 kcal Atomic # 7 Polarization: -48.72 SS G_CDS: 0.08 Total: -48.63 kcal Atomic # 8 Polarization: -22.23 SS G_CDS: -0.68 Total: -22.91 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -30.53 -9.57 -40.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562384377.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.699 kcal (2) G-P(sol) polarization free energy of solvation -30.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds