Wall clock time and date at job start Tue Mar 31 2020 14:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34952 * 125.52518 * 2 1 4 4 C 1.41202 * 108.24464 * 180.02562 * 3 2 1 5 5 N 1.32940 * 126.38236 * 179.97438 * 4 3 2 6 6 C 1.33834 * 119.99457 * 0.02562 * 5 4 3 7 7 O 1.21838 * 120.00108 * 0.02562 * 6 5 4 8 8 N 1.34774 * 119.99729 * 179.97438 * 6 5 4 9 9 C 1.46496 * 120.00256 * 180.02562 * 8 6 5 10 10 H 1.09001 * 109.47059 * 35.00189 * 9 8 6 11 11 C 1.52997 * 109.46941 * 275.00029 * 9 8 6 12 12 C 1.53006 * 109.47164 * 179.97438 * 11 9 8 13 13 C 1.52997 * 109.47127 * 59.99836 * 12 11 9 14 14 C 1.53000 * 109.47060 * 300.00449 * 13 12 11 15 15 H 1.09001 * 109.47194 * 299.99650 * 14 13 12 16 16 F 1.39898 * 109.46890 * 180.02562 * 14 13 12 17 17 C 1.52996 * 109.47328 * 60.00126 * 14 13 12 18 18 N 1.37421 * 107.24289 * 0.25498 * 4 3 2 19 19 H 0.97003 * 126.37131 * 179.71256 * 18 4 3 20 20 N 1.36450 * 125.52579 * 180.02562 * 2 1 3 21 21 C 1.46499 * 125.85175 * 359.97438 * 20 2 1 22 22 C 1.50706 * 109.47340 * 84.99424 * 21 20 2 23 23 H 1.07996 * 119.99674 * 359.97438 * 22 21 20 24 24 C 1.37879 * 120.00012 * 179.97438 * 22 21 20 25 25 N 1.31521 * 119.99981 * 0.02562 * 24 22 21 26 26 Si 1.86793 * 119.99948 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.47363 * 0.02562 * 26 24 22 28 28 H 1.48501 * 109.47154 * 120.00000 * 26 24 22 29 29 H 1.48503 * 109.47442 * 240.00135 * 26 24 22 30 30 H 1.09001 * 109.46349 * 89.98465 * 1 2 3 31 31 H 1.08994 * 109.47088 * 209.98235 * 1 2 3 32 32 H 1.09003 * 109.46965 * 329.98484 * 1 2 3 33 33 H 1.07997 * 125.87966 * 359.97271 * 3 2 1 34 34 H 0.97011 * 119.99657 * 0.02562 * 8 6 5 35 35 H 1.09001 * 109.47375 * 299.99966 * 11 9 8 36 36 H 1.09000 * 109.47140 * 59.99984 * 11 9 8 37 37 H 1.08998 * 109.46505 * 299.99708 * 12 11 9 38 38 H 1.08996 * 109.46884 * 180.02562 * 12 11 9 39 39 H 1.09002 * 109.47153 * 180.02562 * 13 12 11 40 40 H 1.09001 * 109.46832 * 60.00321 * 13 12 11 41 41 H 1.08992 * 109.47554 * 59.99639 * 17 14 13 42 42 H 1.09004 * 109.47108 * 179.97438 * 17 14 13 43 43 H 1.09002 * 109.47334 * 204.99590 * 21 20 2 44 44 H 1.08997 * 109.47199 * 324.99180 * 21 20 2 45 45 H 0.96999 * 119.99599 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2912 1.0983 0.0000 4 6 3.6395 0.6789 -0.0006 5 7 4.7104 1.4666 -0.0013 6 6 4.5625 2.7967 -0.0009 7 8 3.4466 3.2857 0.0005 8 7 5.6482 3.5954 -0.0010 9 6 5.4865 5.0514 -0.0001 10 1 4.6101 5.3192 0.5901 11 6 5.3044 5.5452 -1.4367 12 6 5.1349 7.0658 -1.4357 13 6 6.3779 7.7172 -0.8261 14 6 6.5600 7.2233 0.6104 15 1 5.6834 7.4907 1.2005 16 9 7.6962 7.8193 1.1679 17 6 6.7296 5.7027 0.6094 18 7 3.6386 -0.6953 -0.0068 19 1 4.4193 -1.2711 -0.0126 20 7 2.2999 -1.1105 -0.0005 21 6 1.8321 -2.4988 -0.0006 22 6 1.5537 -2.9350 -1.4160 23 1 1.7092 -2.2468 -2.2336 24 6 1.1004 -4.2128 -1.6671 25 7 0.9105 -5.0507 -0.6713 26 14 0.7560 -4.7537 -3.4215 27 1 1.0477 -3.6332 -4.3513 28 1 1.6182 -5.9144 -3.7599 29 1 -0.6713 -5.1437 -3.5481 30 1 -0.3632 0.0003 -1.0277 31 1 -0.3633 -0.8901 0.5135 32 1 -0.3633 0.8899 0.5141 33 1 1.9468 2.1219 -0.0004 34 1 6.5367 3.2060 -0.0018 35 1 6.1808 5.2774 -2.0268 36 1 4.4186 5.0815 -1.8707 37 1 4.2582 7.3332 -0.8457 38 1 5.0047 7.4175 -2.4591 39 1 6.2569 8.8005 -0.8250 40 1 7.2545 7.4497 -1.4162 41 1 7.6061 5.4353 0.0194 42 1 6.8598 5.3509 1.6328 43 1 2.5989 -3.1407 0.4333 44 1 0.9187 -2.5744 0.5893 45 1 0.5912 -5.9494 -0.8479 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592245420.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:28 Heat of formation + Delta-G solvation = -21.588791 kcal Electronic energy + Delta-G solvation = -27003.232879 eV Core-core repulsion = 22971.016004 eV Total energy + Delta-G solvation = -4032.216875 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.170 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.61866 -42.35459 -40.64940 -38.78605 -36.05181 -34.91534 -34.66507 -33.64205 -32.32515 -31.30873 -30.10090 -28.79449 -28.28246 -25.09054 -23.94940 -23.61777 -22.55573 -21.31470 -21.09464 -20.83966 -19.01397 -18.67210 -17.80481 -17.48269 -16.77136 -16.70122 -16.49440 -16.47437 -15.92473 -15.77789 -15.58030 -15.28008 -15.08014 -14.73768 -14.39220 -14.25068 -14.20496 -13.77680 -13.74484 -13.62743 -13.43987 -13.18236 -12.99559 -12.76090 -12.73685 -12.31744 -12.31202 -12.06590 -12.01568 -11.63299 -11.56148 -11.28758 -11.13083 -11.07749 -10.77225 -10.29500 -9.90602 -9.85498 -8.53901 -8.20064 -6.54881 0.29350 0.58962 1.36867 1.42311 1.51782 1.64487 2.26542 2.32931 2.92743 3.00485 3.15686 3.48283 3.62974 3.70688 3.73812 3.89880 4.05724 4.17030 4.24610 4.32599 4.34663 4.36521 4.50226 4.57907 4.63005 4.70693 4.86426 4.90321 4.92342 4.96820 5.04406 5.05822 5.13245 5.14942 5.19721 5.29788 5.32226 5.42134 5.52461 5.71591 5.81237 5.99648 6.17471 6.37466 6.60849 6.92859 7.04062 7.18724 8.16253 8.67490 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.028242 B = 0.002154 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.201144 B =12993.229065 C =13102.126509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.195 3.805 3 C -0.347 4.347 4 C 0.474 3.526 5 N -0.724 5.724 6 C 0.674 3.326 7 O -0.657 6.657 8 N -0.716 5.716 9 C 0.169 3.831 10 H 0.068 0.932 11 C -0.129 4.129 12 C -0.107 4.107 13 C -0.139 4.139 14 C 0.095 3.905 15 H 0.095 0.905 16 F -0.224 7.224 17 C -0.143 4.143 18 N -0.468 5.468 19 H 0.451 0.549 20 N -0.351 5.351 21 C 0.268 3.732 22 C -0.559 4.559 23 H 0.056 0.944 24 C 0.031 3.969 25 N -0.913 5.913 26 Si 0.963 3.037 27 H -0.274 1.274 28 H -0.279 1.279 29 H -0.272 1.272 30 H 0.097 0.903 31 H 0.083 0.917 32 H 0.113 0.887 33 H 0.174 0.826 34 H 0.404 0.596 35 H 0.070 0.930 36 H 0.043 0.957 37 H 0.069 0.931 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.079 0.921 41 H 0.088 0.912 42 H 0.078 0.922 43 H 0.041 0.959 44 H 0.069 0.931 45 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.881 17.725 1.016 18.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.069 3.931 3 C -0.379 4.379 4 C 0.221 3.779 5 N -0.489 5.489 6 C 0.373 3.627 7 O -0.541 6.541 8 N -0.369 5.369 9 C 0.064 3.936 10 H 0.087 0.913 11 C -0.168 4.168 12 C -0.145 4.145 13 C -0.176 4.176 14 C 0.058 3.942 15 H 0.113 0.887 16 F -0.205 7.205 17 C -0.182 4.182 18 N -0.192 5.192 19 H 0.300 0.700 20 N -0.138 5.138 21 C 0.151 3.849 22 C -0.597 4.597 23 H 0.075 0.925 24 C -0.171 4.171 25 N -0.550 5.550 26 Si 0.788 3.212 27 H -0.198 1.198 28 H -0.205 1.205 29 H -0.197 1.197 30 H 0.115 0.885 31 H 0.102 0.898 32 H 0.131 0.869 33 H 0.191 0.809 34 H 0.239 0.761 35 H 0.088 0.912 36 H 0.062 0.938 37 H 0.088 0.912 38 H 0.103 0.897 39 H 0.108 0.892 40 H 0.097 0.903 41 H 0.107 0.893 42 H 0.097 0.903 43 H 0.059 0.941 44 H 0.087 0.913 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.905 17.280 1.103 18.295 hybrid contribution 0.249 -1.037 -0.754 1.306 sum 6.155 16.244 0.349 17.374 Atomic orbital electron populations 1.20765 0.83760 1.05327 1.05089 1.21834 0.95966 0.84589 0.90680 1.22086 0.91276 1.00193 1.24388 1.18898 0.91560 0.82466 0.85004 1.68103 1.28834 1.04314 1.47645 1.16900 0.83654 0.85051 0.77106 1.90694 1.25495 1.78941 1.59007 1.44711 1.07835 1.05266 1.79114 1.20620 0.97957 0.78413 0.96658 0.91347 1.21957 1.01704 0.96819 0.96322 1.21381 0.97690 0.93039 1.02391 1.22119 0.99678 1.01889 0.93963 1.21568 0.85453 0.91385 0.95761 0.88734 1.92793 1.55005 1.85381 1.87332 1.22285 0.98373 0.94679 1.02837 1.44364 0.98936 1.04675 1.71225 0.70024 1.47747 0.93102 1.07858 1.65117 1.19693 0.96152 0.70971 0.98103 1.21552 1.47096 0.98572 0.92529 0.92534 1.25580 0.94253 0.95948 1.01348 1.69971 1.45013 1.07257 1.32797 0.85419 0.78292 0.78090 0.79380 1.19823 1.20496 1.19709 0.88466 0.89816 0.86879 0.80895 0.76084 0.91168 0.93785 0.91241 0.89710 0.89225 0.90272 0.89344 0.90310 0.94078 0.91313 0.91703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.45 10.09 71.24 0.72 -1.73 16 2 C 0.19 6.90 6.92 41.09 0.28 7.18 16 3 C -0.35 -13.53 9.41 22.24 0.21 -13.32 16 4 C 0.47 19.04 8.07 133.95 1.08 20.12 16 5 N -0.72 -29.14 10.59 -322.55 -3.42 -32.55 16 6 C 0.67 26.41 8.44 179.35 1.51 27.92 16 7 O -0.66 -28.58 12.92 -4.79 -0.06 -28.64 16 8 N -0.72 -21.28 5.08 -458.34 -2.33 -23.61 16 9 C 0.17 4.04 2.45 44.99 0.11 4.15 16 10 H 0.07 1.90 7.58 -2.39 -0.02 1.88 16 11 C -0.13 -2.81 5.49 30.60 0.17 -2.65 16 12 C -0.11 -1.65 5.92 30.60 0.18 -1.47 16 13 C -0.14 -1.84 5.66 30.59 0.17 -1.67 16 14 C 0.09 1.52 3.87 30.59 0.12 1.63 16 15 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 16 F -0.22 -4.42 17.08 44.97 0.77 -3.65 16 17 C -0.14 -2.57 5.13 30.59 0.16 -2.41 16 18 N -0.47 -17.33 7.38 -54.79 -0.40 -17.74 16 19 H 0.45 14.72 8.96 -213.28 -1.91 12.80 16 20 N -0.35 -13.41 3.63 -337.53 -1.23 -14.64 16 21 C 0.27 11.24 5.93 85.64 0.51 11.74 16 22 C -0.56 -26.32 9.39 25.60 0.24 -26.08 16 23 H 0.06 2.78 7.81 -2.91 -0.02 2.75 16 24 C 0.03 1.48 5.46 84.65 0.46 1.94 16 25 N -0.91 -45.63 13.29 21.45 0.28 -45.34 16 26 Si 0.96 38.78 29.54 68.60 2.03 40.80 16 27 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 28 H -0.28 -11.17 7.11 99.48 0.71 -10.46 16 29 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 30 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 31 H 0.08 2.21 7.14 -2.39 -0.02 2.19 16 32 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 33 H 0.17 7.12 5.77 -2.91 -0.02 7.10 16 34 H 0.40 10.54 8.71 -92.70 -0.81 9.74 16 35 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.08 1.11 8.14 -2.39 -0.02 1.10 16 39 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 43 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.07 2.88 7.18 -2.39 -0.02 2.86 16 45 H 0.27 12.97 8.31 -92.71 -0.77 12.20 16 Total: -1.00 -61.56 372.24 -0.13 -61.68 By element: Atomic # 1 Polarization: 40.00 SS G_CDS: -1.69 Total: 38.31 kcal Atomic # 6 Polarization: 19.45 SS G_CDS: 5.92 Total: 25.38 kcal Atomic # 7 Polarization: -126.79 SS G_CDS: -7.09 Total: -133.88 kcal Atomic # 8 Polarization: -28.58 SS G_CDS: -0.06 Total: -28.64 kcal Atomic # 9 Polarization: -4.42 SS G_CDS: 0.77 Total: -3.65 kcal Atomic # 14 Polarization: 38.78 SS G_CDS: 2.03 Total: 40.80 kcal Total: -61.56 -0.13 -61.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592245420.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.095 kcal (2) G-P(sol) polarization free energy of solvation -61.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds