Wall clock time and date at job start Tue Mar 31 2020 13:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00244 * 2 1 4 4 H 1.48495 * 109.47381 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47125 * 300.00461 * 3 2 1 6 6 H 1.48500 * 109.46943 * 59.99789 * 3 2 1 7 7 C 1.37880 * 120.00073 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99961 * 207.52115 * 7 2 1 9 9 C 1.50701 * 119.99665 * 27.52555 * 7 2 1 10 10 N 1.46494 * 109.47375 * 294.14864 * 9 7 2 11 11 C 1.46503 * 119.99514 * 276.33924 * 10 9 7 12 12 C 1.53006 * 109.47224 * 90.00275 * 11 10 9 13 13 N 1.46891 * 109.47240 * 179.97438 * 12 11 10 14 14 C 1.47014 * 111.00118 * 293.63259 * 13 12 11 15 15 C 1.53102 * 109.26061 * 177.61125 * 14 13 12 16 16 O 1.43014 * 109.25889 * 56.84222 * 15 14 13 17 17 C 1.43005 * 113.74072 * 301.33453 * 16 15 14 18 18 C 1.47018 * 110.99919 * 169.99820 * 13 12 11 19 19 C 1.34775 * 120.00530 * 96.34040 * 10 9 7 20 20 O 1.21281 * 120.00139 * 187.60665 * 19 10 9 21 21 C 1.50703 * 119.99658 * 7.60239 * 19 10 9 22 22 H 1.09004 * 109.70514 * 314.55683 * 21 19 10 23 23 C 1.53501 * 109.70894 * 75.18151 * 21 19 10 24 24 C 1.53244 * 108.16794 * 182.07633 * 23 21 19 25 25 C 1.50442 * 109.43771 * 313.18393 * 24 23 21 26 26 C 1.30680 * 122.50085 * 17.49059 * 25 24 23 27 27 O 1.35132 * 123.34199 * 359.54115 * 26 25 24 28 28 H 0.97002 * 119.99872 * 354.96261 * 1 2 3 29 29 H 1.09004 * 109.47329 * 54.15162 * 9 7 2 30 30 H 1.09007 * 109.47105 * 174.14627 * 9 7 2 31 31 H 1.09000 * 109.47034 * 209.99663 * 11 10 9 32 32 H 1.08995 * 109.47335 * 330.00023 * 11 10 9 33 33 H 1.09000 * 109.46615 * 299.99644 * 12 11 10 34 34 H 1.09000 * 109.46726 * 59.99492 * 12 11 10 35 35 H 1.08998 * 109.50448 * 297.54427 * 14 13 12 36 36 H 1.09000 * 109.50581 * 57.66916 * 14 13 12 37 37 H 1.09007 * 109.50118 * 296.91239 * 15 14 13 38 38 H 1.08999 * 109.54095 * 176.80482 * 15 14 13 39 39 H 1.08996 * 109.51030 * 298.73482 * 17 16 15 40 40 H 1.09000 * 109.54225 * 178.62389 * 17 16 15 41 41 H 1.08994 * 109.50704 * 302.32416 * 18 13 12 42 42 H 1.08996 * 109.50692 * 62.41254 * 18 13 12 43 43 H 1.08998 * 109.72266 * 301.74932 * 23 21 19 44 44 H 1.08994 * 109.72679 * 62.41889 * 23 21 19 45 45 H 1.09004 * 109.46907 * 193.20063 * 24 23 21 46 46 H 1.08993 * 109.47844 * 73.17538 * 24 23 21 47 47 H 1.08005 * 118.74624 * 197.50631 * 25 24 23 48 48 H 1.08001 * 118.33152 * 179.56233 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 2.9929 -1.2468 0.4327 9 6 1.3789 -2.4255 -0.6021 10 7 0.2102 -2.8169 0.1897 11 6 0.3816 -3.6312 1.3954 12 6 0.5755 -2.7156 2.6059 13 7 0.7468 -3.5321 3.8150 14 6 -0.4863 -4.2662 4.1340 15 6 -0.2458 -5.1475 5.3626 16 8 0.1947 -4.3303 6.4505 17 6 1.3937 -3.6015 6.1743 18 6 1.1698 -2.7044 4.9540 19 6 -1.0228 -2.4279 -0.1910 20 8 -1.9738 -2.6319 0.5334 21 6 -1.2196 -1.7392 -1.5170 22 1 -0.4560 -0.9729 -1.6501 23 6 -1.1262 -2.7672 -2.6531 24 6 -1.2788 -2.0234 -3.9842 25 6 -2.4470 -1.0793 -3.8991 26 6 -2.9682 -0.7080 -2.7597 27 8 -2.5175 -1.1396 -1.5611 28 1 -0.4850 0.8368 0.0738 29 1 1.0698 -2.2124 -1.6254 30 1 2.1053 -3.2383 -0.6039 31 1 -0.5036 -4.2491 1.5454 32 1 1.2563 -4.2712 1.2803 33 1 1.4607 -2.0977 2.4559 34 1 -0.2993 -2.0755 2.7210 35 1 -1.2873 -3.5579 4.3454 36 1 -0.7671 -4.8917 3.2867 37 1 0.5178 -5.8909 5.1334 38 1 -1.1728 -5.6508 5.6374 39 1 2.2050 -4.2998 5.9687 40 1 1.6528 -2.9860 7.0358 41 1 2.0979 -2.1899 4.7053 42 1 0.3956 -1.9706 5.1781 43 1 -0.1575 -3.2658 -2.6192 44 1 -1.9233 -3.5033 -2.5498 45 1 -1.4505 -2.7429 -4.7848 46 1 -0.3697 -1.4589 -4.1915 47 1 -2.8712 -0.6940 -4.8146 48 1 -3.8017 -0.0215 -2.7769 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777854316.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:35 Heat of formation + Delta-G solvation = -80.824526 kcal Electronic energy + Delta-G solvation = -29785.684568 eV Core-core repulsion = 25842.066592 eV Total energy + Delta-G solvation = -3943.617976 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.82239 -39.29590 -37.93957 -35.70896 -34.68613 -33.30340 -32.51028 -31.14746 -30.97123 -29.29826 -27.49080 -26.27537 -24.73080 -23.79969 -23.16523 -22.81211 -21.60692 -20.07479 -18.84328 -17.91199 -16.94856 -16.52988 -16.07901 -15.98113 -15.78960 -15.28731 -14.99987 -14.88160 -14.76621 -14.54225 -14.21170 -13.81068 -13.72391 -13.33172 -12.97725 -12.63611 -12.45430 -12.42185 -12.32565 -12.01477 -11.94116 -11.78092 -11.50635 -11.21918 -11.17067 -11.10047 -10.78323 -10.66277 -10.45649 -10.37715 -10.10395 -10.00016 -9.86705 -9.73830 -9.52667 -8.68656 -8.35626 -8.03045 -7.80615 -7.29851 -6.30673 -4.36704 2.79197 3.10991 3.24975 3.27705 3.59282 3.93671 4.11667 4.18870 4.22068 4.65134 4.95439 5.06800 5.22849 5.23248 5.24994 5.34217 5.36480 5.45353 5.49240 5.66272 5.70926 5.73399 5.82249 5.95262 5.98784 6.03150 6.05631 6.07905 6.15217 6.21070 6.23747 6.33835 6.35788 6.49602 6.65926 6.69892 6.83879 6.91571 6.98830 7.03328 7.20471 7.34432 7.40440 7.64175 7.82507 7.97511 8.28542 8.61114 8.79453 9.25058 9.54122 10.61078 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.013056 B = 0.004448 C = 0.003672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.145604 B = 6292.926264 C = 7623.243133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.081 3.919 3 Si 0.882 3.118 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.285 1.285 7 C -0.553 4.553 8 H 0.066 0.934 9 C 0.220 3.780 10 N -0.587 5.587 11 C 0.141 3.859 12 C 0.051 3.949 13 N -0.537 5.537 14 C 0.015 3.985 15 C 0.065 3.935 16 O -0.391 6.391 17 C 0.066 3.934 18 C 0.019 3.981 19 C 0.570 3.430 20 O -0.576 6.576 21 C 0.085 3.915 22 H 0.140 0.860 23 C -0.159 4.159 24 C -0.071 4.071 25 C -0.310 4.310 26 C 0.072 3.928 27 O -0.295 6.295 28 H 0.272 0.728 29 H 0.040 0.960 30 H 0.031 0.969 31 H 0.058 0.942 32 H 0.067 0.933 33 H 0.092 0.908 34 H 0.039 0.961 35 H 0.041 0.959 36 H 0.087 0.913 37 H 0.057 0.943 38 H 0.093 0.907 39 H 0.057 0.943 40 H 0.093 0.907 41 H 0.085 0.915 42 H 0.039 0.961 43 H 0.081 0.919 44 H 0.065 0.935 45 H 0.066 0.934 46 H 0.067 0.933 47 H 0.111 0.889 48 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.820 -5.723 0.485 5.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.126 4.126 3 Si 0.709 3.291 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.212 1.212 7 C -0.591 4.591 8 H 0.084 0.916 9 C 0.101 3.899 10 N -0.319 5.319 11 C 0.017 3.983 12 C -0.077 4.077 13 N -0.263 5.263 14 C -0.113 4.113 15 C -0.012 4.012 16 O -0.309 6.309 17 C -0.011 4.011 18 C -0.109 4.109 19 C 0.359 3.641 20 O -0.456 6.456 21 C 0.026 3.974 22 H 0.156 0.844 23 C -0.197 4.197 24 C -0.108 4.108 25 C -0.330 4.330 26 C 0.007 3.993 27 O -0.207 6.207 28 H 0.083 0.917 29 H 0.058 0.942 30 H 0.050 0.950 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.110 0.890 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.106 0.894 37 H 0.075 0.925 38 H 0.111 0.889 39 H 0.075 0.925 40 H 0.111 0.889 41 H 0.103 0.897 42 H 0.057 0.943 43 H 0.100 0.900 44 H 0.083 0.917 45 H 0.085 0.915 46 H 0.085 0.915 47 H 0.129 0.871 48 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 0.377 -6.044 1.050 6.146 hybrid contribution 0.030 1.884 -0.379 1.922 sum 0.407 -4.160 0.672 4.233 Atomic orbital electron populations 1.69895 1.06102 1.27985 1.44358 1.25084 0.94427 0.99548 0.93524 0.86718 0.80867 0.83635 0.77923 1.19445 1.20530 1.21159 1.21349 1.02693 0.92908 1.42118 0.91605 1.19643 0.83869 0.94448 0.91903 1.48443 1.06890 1.51593 1.25006 1.20952 1.00212 0.92368 0.84807 1.22527 1.02520 0.95020 0.87654 1.62285 1.31227 1.28789 1.04039 1.22797 0.91919 0.98081 0.98533 1.22671 0.99798 0.92481 0.86209 1.87933 1.43074 1.61270 1.38664 1.22646 0.87168 0.94327 0.96972 1.22713 1.01367 0.95345 0.91496 1.19293 0.82439 0.76079 0.86310 1.90532 1.41771 1.57623 1.55711 1.23039 0.85076 0.96405 0.92869 0.84370 1.22342 1.02984 0.98711 0.95699 1.20222 0.96902 0.96918 0.96767 1.22324 1.05129 1.08024 0.97512 1.21999 0.97326 0.95118 0.84808 1.85941 1.34002 1.72793 1.27938 0.91724 0.94204 0.95038 0.92320 0.91459 0.88994 0.94239 0.94057 0.89449 0.92500 0.88890 0.92455 0.88929 0.89669 0.94279 0.90021 0.91661 0.91515 0.91454 0.87077 0.83558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -21.35 7.97 55.43 0.44 -20.91 16 2 C 0.08 1.95 5.19 -17.82 -0.09 1.86 16 3 Si 0.88 19.12 29.62 -169.99 -5.04 14.08 16 4 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 5 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 6 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.55 -12.99 8.20 -34.44 -0.28 -13.27 16 8 H 0.07 1.57 7.95 -52.49 -0.42 1.15 16 9 C 0.22 4.71 5.36 -5.20 -0.03 4.68 16 10 N -0.59 -12.87 2.28 -175.05 -0.40 -13.27 16 11 C 0.14 2.80 5.32 -4.04 -0.02 2.78 16 12 C 0.05 1.02 5.14 -3.83 -0.02 1.00 16 13 N -0.54 -9.06 4.73 -234.31 -1.11 -10.17 16 14 C 0.02 0.24 5.44 -3.71 -0.02 0.22 16 15 C 0.07 0.86 7.01 37.21 0.26 1.13 16 16 O -0.39 -5.72 10.83 -35.23 -0.38 -6.11 16 17 C 0.07 0.85 7.01 37.21 0.26 1.11 16 18 C 0.02 0.30 5.65 -3.71 -0.02 0.28 16 19 C 0.57 13.69 5.22 -10.98 -0.06 13.63 16 20 O -0.58 -15.60 16.24 -13.80 -0.22 -15.82 16 21 C 0.08 1.86 1.53 -27.62 -0.04 1.82 16 22 H 0.14 3.28 4.64 -51.93 -0.24 3.04 16 23 C -0.16 -2.89 5.19 -26.35 -0.14 -3.02 16 24 C -0.07 -1.12 6.23 -27.88 -0.17 -1.30 16 25 C -0.31 -5.00 9.97 -36.06 -0.36 -5.36 16 26 C 0.07 1.29 10.88 29.10 0.32 1.61 16 27 O -0.30 -6.62 9.63 -36.45 -0.35 -6.97 16 28 H 0.27 6.87 8.32 -40.82 -0.34 6.53 16 29 H 0.04 0.84 4.71 -51.93 -0.24 0.60 16 30 H 0.03 0.61 7.98 -51.93 -0.41 0.20 16 31 H 0.06 1.18 5.91 -51.93 -0.31 0.87 16 32 H 0.07 1.22 7.95 -51.93 -0.41 0.81 16 33 H 0.09 2.00 7.06 -51.93 -0.37 1.63 16 34 H 0.04 0.94 8.12 -51.93 -0.42 0.52 16 35 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.09 1.35 6.38 -51.93 -0.33 1.02 16 37 H 0.06 0.70 8.14 -51.92 -0.42 0.28 16 38 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.08 1.24 8.09 -51.93 -0.42 0.82 16 42 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.08 1.39 6.63 -51.93 -0.34 1.04 16 44 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 45 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 47 H 0.11 1.51 8.06 -52.48 -0.42 1.09 16 48 H 0.15 2.15 8.06 -52.49 -0.42 1.72 16 LS Contribution 369.09 15.07 5.56 5.56 Total: -1.00 -28.73 369.09 -9.62 -38.35 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: -7.71 Total: 8.10 kcal Atomic # 6 Polarization: 7.58 SS G_CDS: -0.42 Total: 7.16 kcal Atomic # 7 Polarization: -43.29 SS G_CDS: -1.07 Total: -44.35 kcal Atomic # 8 Polarization: -27.94 SS G_CDS: -0.96 Total: -28.90 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.04 Total: 14.08 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -28.73 -9.62 -38.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777854316.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.473 kcal (2) G-P(sol) polarization free energy of solvation -28.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds