Wall clock time and date at job start Tue Mar 31 2020 13:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00244 * 2 1 4 4 H 1.48495 * 109.47381 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47125 * 300.00461 * 3 2 1 6 6 H 1.48500 * 109.46943 * 59.99789 * 3 2 1 7 7 C 1.37880 * 120.00073 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99961 * 207.52115 * 7 2 1 9 9 C 1.50701 * 119.99665 * 27.52555 * 7 2 1 10 10 N 1.46494 * 109.47375 * 294.14864 * 9 7 2 11 11 C 1.46503 * 119.99514 * 276.33924 * 10 9 7 12 12 C 1.53006 * 109.47224 * 90.00275 * 11 10 9 13 13 N 1.46891 * 109.47240 * 179.97438 * 12 11 10 14 14 C 1.47014 * 111.00118 * 293.63259 * 13 12 11 15 15 C 1.53102 * 109.26061 * 177.61125 * 14 13 12 16 16 O 1.43014 * 109.25889 * 56.84222 * 15 14 13 17 17 C 1.43005 * 113.74072 * 301.33453 * 16 15 14 18 18 C 1.47018 * 110.99919 * 169.99820 * 13 12 11 19 19 C 1.34775 * 120.00530 * 96.34040 * 10 9 7 20 20 O 1.21281 * 120.00139 * 187.60665 * 19 10 9 21 21 C 1.50703 * 119.99658 * 7.60239 * 19 10 9 22 22 H 1.09004 * 109.70514 * 314.55683 * 21 19 10 23 23 C 1.53501 * 109.70894 * 75.18151 * 21 19 10 24 24 C 1.53244 * 108.16794 * 182.07633 * 23 21 19 25 25 C 1.50442 * 109.43771 * 313.18393 * 24 23 21 26 26 C 1.30680 * 122.50085 * 17.49059 * 25 24 23 27 27 O 1.35132 * 123.34199 * 359.54115 * 26 25 24 28 28 H 0.97002 * 119.99872 * 354.96261 * 1 2 3 29 29 H 1.09004 * 109.47329 * 54.15162 * 9 7 2 30 30 H 1.09007 * 109.47105 * 174.14627 * 9 7 2 31 31 H 1.09000 * 109.47034 * 209.99663 * 11 10 9 32 32 H 1.08995 * 109.47335 * 330.00023 * 11 10 9 33 33 H 1.09000 * 109.46615 * 299.99644 * 12 11 10 34 34 H 1.09000 * 109.46726 * 59.99492 * 12 11 10 35 35 H 1.08998 * 109.50448 * 297.54427 * 14 13 12 36 36 H 1.09000 * 109.50581 * 57.66916 * 14 13 12 37 37 H 1.09007 * 109.50118 * 296.91239 * 15 14 13 38 38 H 1.08999 * 109.54095 * 176.80482 * 15 14 13 39 39 H 1.08996 * 109.51030 * 298.73482 * 17 16 15 40 40 H 1.09000 * 109.54225 * 178.62389 * 17 16 15 41 41 H 1.08994 * 109.50704 * 302.32416 * 18 13 12 42 42 H 1.08996 * 109.50692 * 62.41254 * 18 13 12 43 43 H 1.08998 * 109.72266 * 301.74932 * 23 21 19 44 44 H 1.08994 * 109.72679 * 62.41889 * 23 21 19 45 45 H 1.09004 * 109.46907 * 193.20063 * 24 23 21 46 46 H 1.08993 * 109.47844 * 73.17538 * 24 23 21 47 47 H 1.08005 * 118.74624 * 197.50631 * 25 24 23 48 48 H 1.08001 * 118.33152 * 179.56233 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 2.9929 -1.2468 0.4327 9 6 1.3789 -2.4255 -0.6021 10 7 0.2102 -2.8169 0.1897 11 6 0.3816 -3.6312 1.3954 12 6 0.5755 -2.7156 2.6059 13 7 0.7468 -3.5321 3.8150 14 6 -0.4863 -4.2662 4.1340 15 6 -0.2458 -5.1475 5.3626 16 8 0.1947 -4.3303 6.4505 17 6 1.3937 -3.6015 6.1743 18 6 1.1698 -2.7044 4.9540 19 6 -1.0228 -2.4279 -0.1910 20 8 -1.9738 -2.6319 0.5334 21 6 -1.2196 -1.7392 -1.5170 22 1 -0.4560 -0.9729 -1.6501 23 6 -1.1262 -2.7672 -2.6531 24 6 -1.2788 -2.0234 -3.9842 25 6 -2.4470 -1.0793 -3.8991 26 6 -2.9682 -0.7080 -2.7597 27 8 -2.5175 -1.1396 -1.5611 28 1 -0.4850 0.8368 0.0738 29 1 1.0698 -2.2124 -1.6254 30 1 2.1053 -3.2383 -0.6039 31 1 -0.5036 -4.2491 1.5454 32 1 1.2563 -4.2712 1.2803 33 1 1.4607 -2.0977 2.4559 34 1 -0.2993 -2.0755 2.7210 35 1 -1.2873 -3.5579 4.3454 36 1 -0.7671 -4.8917 3.2867 37 1 0.5178 -5.8909 5.1334 38 1 -1.1728 -5.6508 5.6374 39 1 2.2050 -4.2998 5.9687 40 1 1.6528 -2.9860 7.0358 41 1 2.0979 -2.1899 4.7053 42 1 0.3956 -1.9706 5.1781 43 1 -0.1575 -3.2658 -2.6192 44 1 -1.9233 -3.5033 -2.5498 45 1 -1.4505 -2.7429 -4.7848 46 1 -0.3697 -1.4589 -4.1915 47 1 -2.8712 -0.6940 -4.8146 48 1 -3.8017 -0.0215 -2.7769 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777854316.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:35 Heat of formation + Delta-G solvation = -98.741126 kcal Electronic energy + Delta-G solvation = -29786.461490 eV Core-core repulsion = 25842.066592 eV Total energy + Delta-G solvation = -3944.394898 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.42844 -40.55551 -39.58842 -37.22336 -36.38996 -34.74083 -34.30336 -32.62014 -32.18101 -30.83360 -29.24782 -27.69508 -26.18654 -25.00702 -24.77808 -24.44070 -23.12816 -21.36645 -20.47127 -19.49279 -18.73407 -18.03802 -17.46137 -17.41465 -17.06051 -16.90132 -16.74019 -16.20466 -16.08913 -15.96173 -15.76206 -15.32896 -15.21773 -14.74662 -14.56466 -14.17847 -14.11103 -13.88822 -13.80888 -13.71795 -13.44006 -13.27711 -12.97575 -12.85357 -12.70649 -12.44619 -12.30932 -12.16791 -11.89553 -11.79495 -11.73814 -11.60868 -11.44760 -11.33261 -10.73028 -10.49889 -10.18085 -9.51484 -9.26732 -9.05956 -8.15794 -6.26273 1.35107 1.45763 1.46430 1.53447 1.91884 2.37492 2.39029 2.75121 2.91571 2.97527 3.28548 3.84478 3.87438 3.88577 3.98512 4.04053 4.10429 4.15325 4.18980 4.29565 4.36600 4.48712 4.50931 4.52071 4.63539 4.68462 4.72284 4.76513 4.80739 4.81929 4.87431 4.92780 4.93079 4.99411 5.04457 5.12575 5.22250 5.30615 5.41615 5.71999 5.75304 5.81346 5.96184 6.10124 6.15034 6.16327 6.73045 6.81372 7.02547 7.36975 7.71551 8.71391 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.013056 B = 0.004448 C = 0.003672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.145604 B = 6292.926264 C = 7623.243133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.046 3.954 3 Si 0.934 3.066 4 H -0.263 1.263 5 H -0.279 1.279 6 H -0.298 1.298 7 C -0.558 4.558 8 H 0.063 0.937 9 C 0.218 3.782 10 N -0.584 5.584 11 C 0.140 3.860 12 C 0.073 3.927 13 N -0.530 5.530 14 C 0.015 3.985 15 C 0.071 3.929 16 O -0.404 6.404 17 C 0.071 3.929 18 C 0.015 3.985 19 C 0.560 3.440 20 O -0.619 6.619 21 C 0.088 3.912 22 H 0.121 0.879 23 C -0.153 4.153 24 C -0.074 4.074 25 C -0.290 4.290 26 C 0.033 3.967 27 O -0.332 6.332 28 H 0.263 0.737 29 H 0.044 0.956 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.093 0.907 33 H 0.074 0.926 34 H -0.010 1.010 35 H 0.013 0.987 36 H 0.088 0.912 37 H 0.075 0.925 38 H 0.115 0.885 39 H 0.073 0.927 40 H 0.117 0.883 41 H 0.091 0.909 42 H 0.018 0.982 43 H 0.091 0.909 44 H 0.059 0.941 45 H 0.099 0.901 46 H 0.073 0.927 47 H 0.144 0.856 48 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.191 -6.830 -0.461 7.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.159 4.159 3 Si 0.761 3.239 4 H -0.187 1.187 5 H -0.205 1.205 6 H -0.225 1.225 7 C -0.595 4.595 8 H 0.081 0.919 9 C 0.100 3.900 10 N -0.315 5.315 11 C 0.016 3.984 12 C -0.055 4.055 13 N -0.255 5.255 14 C -0.114 4.114 15 C -0.005 4.005 16 O -0.323 6.323 17 C -0.006 4.006 18 C -0.113 4.113 19 C 0.350 3.650 20 O -0.503 6.503 21 C 0.030 3.970 22 H 0.138 0.862 23 C -0.192 4.192 24 C -0.111 4.111 25 C -0.309 4.309 26 C -0.030 4.030 27 O -0.246 6.246 28 H 0.072 0.928 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.111 0.889 33 H 0.093 0.907 34 H 0.008 0.992 35 H 0.032 0.968 36 H 0.106 0.894 37 H 0.093 0.907 38 H 0.133 0.867 39 H 0.091 0.909 40 H 0.135 0.865 41 H 0.110 0.890 42 H 0.036 0.964 43 H 0.110 0.890 44 H 0.078 0.922 45 H 0.117 0.883 46 H 0.091 0.909 47 H 0.162 0.838 48 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 1.789 -7.160 0.089 7.381 hybrid contribution -0.385 2.226 -0.100 2.262 sum 1.404 -4.933 -0.010 5.129 Atomic orbital electron populations 1.70059 1.07029 1.27594 1.45481 1.25605 0.94799 1.01838 0.93634 0.85914 0.80151 0.80770 0.77079 1.18679 1.20485 1.22511 1.21532 1.02480 0.93740 1.41793 0.91871 1.19736 0.83870 0.94597 0.91820 1.48473 1.06562 1.51041 1.25429 1.21070 1.01001 0.92241 0.84059 1.22150 0.99195 0.94548 0.89645 1.62340 1.31518 1.28049 1.03601 1.22871 0.90550 0.97754 1.00198 1.22755 1.01508 0.91841 0.84438 1.87925 1.43800 1.61534 1.39065 1.22758 0.87036 0.94337 0.96438 1.22860 1.00825 0.95579 0.92080 1.19850 0.82394 0.75718 0.87002 1.90489 1.43136 1.59526 1.57121 1.22780 0.84873 0.96555 0.92819 0.86225 1.22318 1.03296 0.97880 0.95661 1.20348 0.97096 0.97485 0.96126 1.22742 1.03990 1.06166 0.98038 1.22535 0.99137 0.97099 0.84213 1.85892 1.34138 1.73902 1.30645 0.92759 0.93784 0.92702 0.92787 0.88923 0.90721 0.99198 0.96830 0.89368 0.90715 0.86737 0.90859 0.86494 0.89029 0.96394 0.89008 0.92220 0.88271 0.90877 0.83789 0.81201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -45.02 7.97 21.45 0.17 -44.85 16 2 C 0.05 2.24 5.19 84.66 0.44 2.68 16 3 Si 0.93 39.67 29.62 68.60 2.03 41.70 16 4 H -0.26 -10.76 7.11 99.48 0.71 -10.06 16 5 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 6 H -0.30 -13.20 7.11 99.48 0.71 -12.50 16 7 C -0.56 -26.10 8.20 25.60 0.21 -25.89 16 8 H 0.06 2.96 7.95 -2.91 -0.02 2.94 16 9 C 0.22 9.22 5.36 85.63 0.46 9.68 16 10 N -0.58 -26.01 2.28 -826.14 -1.89 -27.90 16 11 C 0.14 5.64 5.32 86.38 0.46 6.10 16 12 C 0.07 3.07 5.14 86.31 0.44 3.51 16 13 N -0.53 -18.00 4.73 -895.21 -4.23 -22.23 16 14 C 0.01 0.47 5.44 86.32 0.47 0.94 16 15 C 0.07 1.76 7.01 72.02 0.50 2.27 16 16 O -0.40 -11.13 10.83 -148.98 -1.61 -12.74 16 17 C 0.07 1.70 7.01 72.02 0.50 2.21 16 18 C 0.01 0.46 5.65 86.31 0.49 0.94 16 19 C 0.56 27.80 5.22 87.66 0.46 28.26 16 20 O -0.62 -35.22 16.24 15.47 0.25 -34.97 16 21 C 0.09 3.95 1.53 30.02 0.05 3.99 16 22 H 0.12 5.79 4.64 -2.39 -0.01 5.78 16 23 C -0.15 -5.43 5.19 30.84 0.16 -5.27 16 24 C -0.07 -2.14 6.23 29.85 0.19 -1.95 16 25 C -0.29 -8.66 9.97 25.89 0.26 -8.41 16 26 C 0.03 1.17 10.88 68.11 0.74 1.91 16 27 O -0.33 -15.35 9.63 -65.59 -0.63 -15.98 16 28 H 0.26 13.83 8.32 -92.71 -0.77 13.06 16 29 H 0.04 1.83 4.71 -2.38 -0.01 1.81 16 30 H 0.05 2.04 7.98 -2.38 -0.02 2.02 16 31 H 0.05 2.23 5.91 -2.39 -0.01 2.22 16 32 H 0.09 3.25 7.95 -2.39 -0.02 3.23 16 33 H 0.07 3.35 7.06 -2.39 -0.02 3.33 16 34 H -0.01 -0.54 8.12 -2.39 -0.02 -0.56 16 35 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 36 H 0.09 2.77 6.38 -2.39 -0.02 2.75 16 37 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 38 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 39 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16 41 H 0.09 2.64 8.09 -2.39 -0.02 2.62 16 42 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 43 H 0.09 2.99 6.63 -2.39 -0.02 2.97 16 44 H 0.06 2.15 8.14 -2.39 -0.02 2.14 16 45 H 0.10 2.28 8.14 -2.38 -0.02 2.26 16 46 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 47 H 0.14 3.34 8.06 -2.91 -0.02 3.32 16 48 H 0.17 4.89 8.06 -2.91 -0.02 4.86 16 Total: -1.00 -64.88 369.09 0.86 -64.02 By element: Atomic # 1 Polarization: 31.03 SS G_CDS: 0.94 Total: 31.97 kcal Atomic # 6 Polarization: 15.14 SS G_CDS: 5.83 Total: 20.97 kcal Atomic # 7 Polarization: -89.03 SS G_CDS: -5.95 Total: -94.98 kcal Atomic # 8 Polarization: -61.70 SS G_CDS: -1.99 Total: -63.69 kcal Atomic # 14 Polarization: 39.67 SS G_CDS: 2.03 Total: 41.70 kcal Total: -64.88 0.86 -64.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777854316.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.718 kcal (2) G-P(sol) polarization free energy of solvation -64.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds