Wall clock time and date at job start Tue Mar 31 2020 14:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47211 * 2 1 4 4 C 1.52992 * 109.47169 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.47149 * 300.00047 * 4 3 2 6 6 N 1.46896 * 109.47437 * 180.02562 * 5 4 3 7 7 C 1.46899 * 110.99817 * 298.95112 * 6 5 4 8 8 C 1.46894 * 111.00199 * 174.99806 * 6 5 4 9 9 N 1.46498 * 109.47329 * 189.99929 * 8 6 5 10 10 N 1.40171 * 126.14675 * 269.95976 * 9 8 6 11 11 C 1.32239 * 107.75846 * 179.75868 * 10 9 8 12 12 C 1.40117 * 125.92539 * 180.29281 * 11 10 9 13 13 H 1.08006 * 119.99953 * 180.16648 * 12 11 10 14 14 C 1.40039 * 119.99928 * 0.15941 * 12 11 10 15 15 N 1.30795 * 120.00373 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 119.99889 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46923 * 90.00434 * 16 14 12 18 18 H 1.48501 * 109.47113 * 210.00306 * 16 14 12 19 19 H 1.48495 * 109.47251 * 330.00546 * 16 14 12 20 20 N 1.38499 * 108.14806 * 0.43102 * 11 10 9 21 21 C 1.46499 * 125.83537 * 179.81966 * 20 11 10 22 22 C 1.34728 * 108.32614 * 359.56429 * 20 11 10 23 23 S 1.71200 * 125.96777 * 180.26404 * 22 20 11 24 24 C 1.52998 * 109.47123 * 59.99925 * 5 4 3 25 25 C 1.52994 * 109.47037 * 120.00404 * 2 1 3 26 26 H 1.08997 * 109.47194 * 59.99842 * 1 2 3 27 27 H 1.09000 * 109.46958 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47119 * 299.99937 * 1 2 3 29 29 H 1.09010 * 109.46889 * 240.00099 * 2 1 3 30 30 H 1.08997 * 109.47028 * 60.00006 * 3 2 1 31 31 H 1.09006 * 109.47073 * 300.00072 * 3 2 1 32 32 H 1.09006 * 109.47308 * 180.02562 * 4 3 2 33 33 H 1.08997 * 109.47390 * 59.99922 * 4 3 2 34 34 H 1.09004 * 109.46583 * 300.00038 * 5 4 3 35 35 H 1.09001 * 109.47380 * 296.04671 * 7 6 5 36 36 H 1.09005 * 109.47195 * 56.05000 * 7 6 5 37 37 H 1.09005 * 109.47033 * 176.04392 * 7 6 5 38 38 H 1.09004 * 109.47291 * 70.00078 * 8 6 5 39 39 H 1.08998 * 109.47245 * 310.00156 * 8 6 5 40 40 H 0.96997 * 120.00202 * 179.97438 * 15 14 12 41 41 H 1.09002 * 109.47391 * 269.71902 * 21 20 11 42 42 H 1.09001 * 109.46813 * 149.71958 * 21 20 11 43 43 H 1.09004 * 109.47041 * 29.72085 * 21 20 11 44 44 H 1.08997 * 109.47028 * 60.00362 * 24 5 4 45 45 H 1.09006 * 109.47073 * 180.02562 * 24 5 4 46 46 H 1.09002 * 109.47322 * 299.99761 * 25 2 1 47 47 H 1.08994 * 109.47820 * 59.99666 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0805 0.7210 1.2483 6 7 5.5495 0.7215 1.2480 7 6 6.0759 0.0147 0.0728 8 6 6.0764 0.1418 2.4907 9 7 7.5212 0.3729 2.5632 10 7 8.5203 -0.4773 2.0697 11 6 9.6900 0.0846 2.3242 12 6 10.9448 -0.4403 1.9878 13 1 11.8433 0.1008 2.2455 14 6 11.0340 -1.6667 1.3176 15 7 9.9459 -2.3219 1.0052 16 14 12.7069 -2.3663 0.8686 17 1 13.2006 -3.2198 1.9789 18 1 12.5871 -3.1815 -0.3669 19 1 13.6626 -1.2537 0.6368 20 7 9.4597 1.2806 2.9836 21 6 10.4875 2.2144 3.4504 22 6 8.1287 1.4411 3.1174 23 16 7.3459 2.7696 3.8610 24 6 3.5705 -0.7215 1.2483 25 6 2.0400 -0.7213 1.2491 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5139 -0.8901 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.9334 2.4702 -0.0002 33 1 3.9330 0.9288 -0.8908 34 1 3.7175 1.2348 2.1385 35 1 5.7852 -1.0348 0.1195 36 1 5.6700 0.4641 -0.8335 37 1 7.1633 0.0903 0.0602 38 1 5.8788 -0.9302 2.5039 39 1 5.5899 0.6114 3.3456 40 1 10.0076 -3.1711 0.5406 41 1 10.7748 1.9584 4.4703 42 1 10.0926 3.2301 3.4283 43 1 11.3598 2.1494 2.8001 44 1 3.9335 -1.2352 0.3581 45 1 3.9339 -1.2353 2.1383 46 1 1.6767 -0.2075 2.1392 47 1 1.6767 -1.7489 1.2492 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794619278.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:43 Heat of formation + Delta-G solvation = 65.223879 kcal Electronic energy + Delta-G solvation = -26346.892633 eV Core-core repulsion = 22884.653414 eV Total energy + Delta-G solvation = -3462.239219 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.168 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.85774 -39.50071 -36.43616 -34.25019 -33.81324 -31.36850 -30.78624 -30.40602 -28.00356 -26.70994 -26.39974 -25.38887 -23.38467 -22.71646 -21.37731 -20.85242 -20.34662 -19.31631 -17.73100 -16.70108 -16.13417 -15.69415 -15.49901 -14.91602 -14.83033 -14.60176 -14.40265 -14.22573 -13.98920 -13.60137 -13.37540 -13.11799 -12.52211 -12.33200 -12.30201 -12.16998 -12.10097 -11.81459 -11.64077 -11.50613 -11.47717 -11.34048 -11.07946 -10.92449 -10.78243 -10.64261 -10.54059 -10.48536 -10.24961 -10.09988 -9.98106 -9.53084 -9.19147 -8.88108 -7.95557 -7.06454 -6.71090 -6.61143 -5.14881 2.37187 2.64839 2.76610 2.89715 2.93212 3.42082 3.52565 3.63691 4.07039 4.33971 4.62653 4.65749 4.82957 4.86398 5.03961 5.10678 5.24323 5.38389 5.45547 5.46804 5.51791 5.55103 5.56173 5.58142 5.73415 5.76841 5.85247 5.87697 5.89931 5.94508 6.02792 6.08355 6.12073 6.16151 6.19563 6.21514 6.28992 6.38939 6.46066 6.59569 6.61998 6.79701 7.02479 7.26003 7.27030 7.64112 7.81701 8.23884 8.34739 9.16152 9.90864 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.014797 B = 0.003654 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.776126 B = 7660.543699 C = 9095.153863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.093 4.093 3 C -0.111 4.111 4 C -0.110 4.110 5 C 0.096 3.904 6 N -0.541 5.541 7 C 0.025 3.975 8 C 0.328 3.672 9 N -0.377 5.377 10 N -0.343 5.343 11 C 0.375 3.625 12 C -0.437 4.437 13 H 0.097 0.903 14 C 0.077 3.923 15 N -0.738 5.738 16 Si 0.928 3.072 17 H -0.266 1.266 18 H -0.274 1.274 19 H -0.259 1.259 20 N -0.518 5.518 21 C 0.101 3.899 22 C 0.480 3.520 23 S -0.708 6.708 24 C -0.157 4.157 25 C -0.107 4.107 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.085 0.915 35 H 0.028 0.972 36 H 0.061 0.939 37 H 0.079 0.921 38 H 0.064 0.936 39 H 0.107 0.893 40 H 0.285 0.715 41 H 0.066 0.934 42 H 0.089 0.911 43 H 0.083 0.917 44 H 0.067 0.933 45 H 0.062 0.938 46 H 0.063 0.937 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.820 -1.129 -4.024 9.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.112 4.112 3 C -0.149 4.149 4 C -0.148 4.148 5 C -0.013 4.013 6 N -0.265 5.265 7 C -0.123 4.123 8 C 0.116 3.884 9 N -0.163 5.163 10 N -0.175 5.175 11 C 0.126 3.874 12 C -0.479 4.479 13 H 0.115 0.885 14 C -0.149 4.149 15 N -0.363 5.363 16 Si 0.751 3.249 17 H -0.191 1.191 18 H -0.198 1.198 19 H -0.183 1.183 20 N -0.219 5.219 21 C -0.042 4.042 22 C 0.111 3.889 23 S -0.584 6.584 24 C -0.196 4.196 25 C -0.145 4.145 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.103 0.897 35 H 0.047 0.953 36 H 0.080 0.920 37 H 0.098 0.902 38 H 0.082 0.918 39 H 0.125 0.875 40 H 0.096 0.904 41 H 0.084 0.916 42 H 0.108 0.892 43 H 0.102 0.898 44 H 0.086 0.914 45 H 0.081 0.919 46 H 0.081 0.919 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.770 -0.905 -4.135 10.648 hybrid contribution 1.326 -1.330 -0.275 1.898 sum -8.444 -2.235 -4.410 9.785 Atomic orbital electron populations 1.21828 0.95515 1.01418 1.01633 1.21162 0.95108 0.96439 0.98487 1.21570 0.95416 0.95990 1.01917 1.21579 0.94600 1.01344 0.97232 1.21630 0.85665 0.94399 0.99630 1.62027 1.06909 1.55154 1.02434 1.22435 1.02112 0.95568 0.92182 1.21667 0.75066 0.97826 0.93843 1.49125 1.07203 1.15243 1.44731 1.79335 0.91436 1.13664 1.33046 1.21274 0.95694 0.80635 0.89842 1.18351 0.89317 1.04862 1.35346 0.88518 1.25826 0.99255 0.95937 0.93915 1.69870 1.29249 1.12022 1.25136 0.85971 0.80542 0.79571 0.78810 1.19108 1.19831 1.18291 1.45971 1.04986 1.20674 1.50255 1.21744 0.89518 0.93175 0.99809 1.22860 0.84689 0.91193 0.90130 1.92687 1.72782 1.28368 1.64538 1.22307 0.96207 0.98697 1.02358 1.21513 0.95057 1.00070 0.97899 0.92888 0.92949 0.92708 0.91437 0.91802 0.92021 0.90943 0.91893 0.89665 0.95331 0.91995 0.90246 0.91834 0.87496 0.90438 0.91571 0.89208 0.89846 0.91418 0.91942 0.91871 0.92275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.19 37.16 0.34 -0.86 16 2 C -0.09 -0.89 2.72 -90.62 -0.25 -1.14 16 3 C -0.11 -1.13 5.20 -26.74 -0.14 -1.27 16 4 C -0.11 -1.37 5.01 -26.73 -0.13 -1.50 16 5 C 0.10 1.34 2.22 -67.71 -0.15 1.19 16 6 N -0.54 -9.58 4.89 -238.79 -1.17 -10.74 16 7 C 0.02 0.44 8.62 60.06 0.52 0.96 16 8 C 0.33 6.40 5.35 -63.32 -0.34 6.06 16 9 N -0.38 -8.78 3.34 -65.06 -0.22 -8.99 16 10 N -0.34 -8.61 9.81 31.21 0.31 -8.31 16 11 C 0.37 9.20 7.50 -155.27 -1.16 8.03 16 12 C -0.44 -10.11 8.98 -38.20 -0.34 -10.45 16 13 H 0.10 2.02 7.11 -52.48 -0.37 1.64 16 14 C 0.08 1.72 5.50 -17.32 -0.10 1.62 16 15 N -0.74 -17.52 11.90 55.55 0.66 -16.86 16 16 Si 0.93 16.47 29.56 -169.99 -5.03 11.44 16 17 H -0.27 -4.70 7.11 56.52 0.40 -4.30 16 18 H -0.27 -4.82 7.11 56.52 0.40 -4.42 16 19 H -0.26 -4.49 7.11 56.52 0.40 -4.09 16 20 N -0.52 -11.87 3.17 -124.66 -0.39 -12.26 16 21 C 0.10 1.83 10.65 59.85 0.64 2.46 16 22 C 0.48 11.61 7.84 -86.94 -0.68 10.93 16 23 S -0.71 -17.75 29.50 -107.50 -3.17 -20.92 16 24 C -0.16 -1.93 4.51 -26.71 -0.12 -2.05 16 25 C -0.11 -1.10 5.21 -26.71 -0.14 -1.24 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.06 0.79 6.34 -51.93 -0.33 0.46 16 34 H 0.09 1.24 8.03 -51.93 -0.42 0.82 16 35 H 0.03 0.49 6.51 -51.93 -0.34 0.15 16 36 H 0.06 0.98 6.13 -51.93 -0.32 0.66 16 37 H 0.08 1.73 6.85 -51.93 -0.36 1.37 16 38 H 0.06 1.20 6.94 -51.93 -0.36 0.84 16 39 H 0.11 2.09 7.50 -51.93 -0.39 1.70 16 40 H 0.28 6.13 8.30 -40.82 -0.34 5.79 16 41 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.09 1.62 7.61 -51.93 -0.40 1.23 16 43 H 0.08 1.33 7.31 -51.93 -0.38 0.95 16 44 H 0.07 0.88 6.48 -51.93 -0.34 0.54 16 45 H 0.06 0.81 6.75 -51.93 -0.35 0.46 16 46 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 47 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 375.26 15.07 5.66 5.66 Total: -1.00 -29.11 375.26 -13.11 -42.22 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -7.70 Total: 6.02 kcal Atomic # 6 Polarization: 14.81 SS G_CDS: -2.06 Total: 12.75 kcal Atomic # 7 Polarization: -56.35 SS G_CDS: -0.81 Total: -57.16 kcal Atomic # 14 Polarization: 16.47 SS G_CDS: -5.03 Total: 11.44 kcal Atomic # 16 Polarization: -17.75 SS G_CDS: -3.17 Total: -20.92 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -29.11 -13.11 -42.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794619278.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.444 kcal (2) G-P(sol) polarization free energy of solvation -29.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds