Wall clock time and date at job start Tue Mar 31 2020 14:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47211 * 2 1 4 4 C 1.52992 * 109.47169 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.47149 * 300.00047 * 4 3 2 6 6 N 1.46896 * 109.47437 * 180.02562 * 5 4 3 7 7 C 1.46899 * 110.99817 * 298.95112 * 6 5 4 8 8 C 1.46894 * 111.00199 * 174.99806 * 6 5 4 9 9 N 1.46498 * 109.47329 * 189.99929 * 8 6 5 10 10 N 1.40171 * 126.14675 * 269.95976 * 9 8 6 11 11 C 1.32239 * 107.75846 * 179.75868 * 10 9 8 12 12 C 1.40117 * 125.92539 * 180.29281 * 11 10 9 13 13 H 1.08006 * 119.99953 * 180.16648 * 12 11 10 14 14 C 1.40039 * 119.99928 * 0.15941 * 12 11 10 15 15 N 1.30795 * 120.00373 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 119.99889 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46923 * 90.00434 * 16 14 12 18 18 H 1.48501 * 109.47113 * 210.00306 * 16 14 12 19 19 H 1.48495 * 109.47251 * 330.00546 * 16 14 12 20 20 N 1.38499 * 108.14806 * 0.43102 * 11 10 9 21 21 C 1.46499 * 125.83537 * 179.81966 * 20 11 10 22 22 C 1.34728 * 108.32614 * 359.56429 * 20 11 10 23 23 S 1.71200 * 125.96777 * 180.26404 * 22 20 11 24 24 C 1.52998 * 109.47123 * 59.99925 * 5 4 3 25 25 C 1.52994 * 109.47037 * 120.00404 * 2 1 3 26 26 H 1.08997 * 109.47194 * 59.99842 * 1 2 3 27 27 H 1.09000 * 109.46958 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47119 * 299.99937 * 1 2 3 29 29 H 1.09010 * 109.46889 * 240.00099 * 2 1 3 30 30 H 1.08997 * 109.47028 * 60.00006 * 3 2 1 31 31 H 1.09006 * 109.47073 * 300.00072 * 3 2 1 32 32 H 1.09006 * 109.47308 * 180.02562 * 4 3 2 33 33 H 1.08997 * 109.47390 * 59.99922 * 4 3 2 34 34 H 1.09004 * 109.46583 * 300.00038 * 5 4 3 35 35 H 1.09001 * 109.47380 * 296.04671 * 7 6 5 36 36 H 1.09005 * 109.47195 * 56.05000 * 7 6 5 37 37 H 1.09005 * 109.47033 * 176.04392 * 7 6 5 38 38 H 1.09004 * 109.47291 * 70.00078 * 8 6 5 39 39 H 1.08998 * 109.47245 * 310.00156 * 8 6 5 40 40 H 0.96997 * 120.00202 * 179.97438 * 15 14 12 41 41 H 1.09002 * 109.47391 * 269.71902 * 21 20 11 42 42 H 1.09001 * 109.46813 * 149.71958 * 21 20 11 43 43 H 1.09004 * 109.47041 * 29.72085 * 21 20 11 44 44 H 1.08997 * 109.47028 * 60.00362 * 24 5 4 45 45 H 1.09006 * 109.47073 * 180.02562 * 24 5 4 46 46 H 1.09002 * 109.47322 * 299.99761 * 25 2 1 47 47 H 1.08994 * 109.47820 * 59.99666 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0805 0.7210 1.2483 6 7 5.5495 0.7215 1.2480 7 6 6.0759 0.0147 0.0728 8 6 6.0764 0.1418 2.4907 9 7 7.5212 0.3729 2.5632 10 7 8.5203 -0.4773 2.0697 11 6 9.6900 0.0846 2.3242 12 6 10.9448 -0.4403 1.9878 13 1 11.8433 0.1008 2.2455 14 6 11.0340 -1.6667 1.3176 15 7 9.9459 -2.3219 1.0052 16 14 12.7069 -2.3663 0.8686 17 1 13.2006 -3.2198 1.9789 18 1 12.5871 -3.1815 -0.3669 19 1 13.6626 -1.2537 0.6368 20 7 9.4597 1.2806 2.9836 21 6 10.4875 2.2144 3.4504 22 6 8.1287 1.4411 3.1174 23 16 7.3459 2.7696 3.8610 24 6 3.5705 -0.7215 1.2483 25 6 2.0400 -0.7213 1.2491 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5139 -0.8901 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.9334 2.4702 -0.0002 33 1 3.9330 0.9288 -0.8908 34 1 3.7175 1.2348 2.1385 35 1 5.7852 -1.0348 0.1195 36 1 5.6700 0.4641 -0.8335 37 1 7.1633 0.0903 0.0602 38 1 5.8788 -0.9302 2.5039 39 1 5.5899 0.6114 3.3456 40 1 10.0076 -3.1711 0.5406 41 1 10.7748 1.9584 4.4703 42 1 10.0926 3.2301 3.4283 43 1 11.3598 2.1494 2.8001 44 1 3.9335 -1.2352 0.3581 45 1 3.9339 -1.2353 2.1383 46 1 1.6767 -0.2075 2.1392 47 1 1.6767 -1.7489 1.2492 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000794619278.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:42 Heat of formation + Delta-G solvation = 51.449416 kcal Electronic energy + Delta-G solvation = -26347.489939 eV Core-core repulsion = 22884.653414 eV Total energy + Delta-G solvation = -3462.836525 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.168 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.64126 -40.63664 -37.67910 -35.90979 -35.44636 -32.76803 -31.87636 -31.70319 -29.61445 -28.30333 -27.80235 -26.67684 -24.74193 -23.79604 -22.92282 -22.62399 -21.35828 -20.38188 -19.47509 -18.42120 -17.62330 -17.41913 -16.84106 -16.52884 -16.37407 -15.98317 -15.43256 -15.28471 -15.11108 -15.00623 -14.82342 -14.05971 -13.91807 -13.75036 -13.46696 -13.38762 -13.26245 -13.11451 -13.09478 -12.90983 -12.75398 -12.66362 -12.42287 -12.32523 -12.01279 -11.96904 -11.79049 -11.67429 -11.48190 -11.37159 -11.19230 -11.00489 -10.86590 -10.65561 -9.35767 -8.81020 -8.64090 -8.55156 -6.97018 0.53851 0.83541 1.27824 1.44541 1.59650 1.66726 1.85623 2.12586 2.41924 2.88783 3.09485 3.56506 3.68071 3.75054 3.90961 4.04293 4.07629 4.14632 4.22099 4.34700 4.38782 4.44990 4.45731 4.52352 4.56593 4.60705 4.66234 4.70795 4.80882 4.87164 4.92111 4.97660 5.01277 5.03377 5.09169 5.13536 5.20278 5.23001 5.28266 5.29367 5.41736 5.45508 5.59013 5.71107 5.83342 5.97466 6.20826 6.48519 6.57004 7.33067 8.23888 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.014797 B = 0.003654 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.776126 B = 7660.543699 C = 9095.153863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.091 4.091 3 C -0.105 4.105 4 C -0.104 4.104 5 C 0.096 3.904 6 N -0.552 5.552 7 C 0.041 3.959 8 C 0.328 3.672 9 N -0.374 5.374 10 N -0.368 5.368 11 C 0.352 3.648 12 C -0.450 4.450 13 H 0.118 0.882 14 C 0.036 3.964 15 N -0.774 5.774 16 Si 1.005 2.995 17 H -0.262 1.262 18 H -0.272 1.272 19 H -0.248 1.248 20 N -0.518 5.518 21 C 0.095 3.905 22 C 0.466 3.534 23 S -0.739 6.739 24 C -0.149 4.149 25 C -0.103 4.103 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.080 0.920 35 H 0.031 0.969 36 H 0.081 0.919 37 H 0.037 0.963 38 H 0.067 0.933 39 H 0.104 0.896 40 H 0.291 0.709 41 H 0.082 0.918 42 H 0.087 0.913 43 H 0.106 0.894 44 H 0.062 0.938 45 H 0.052 0.948 46 H 0.066 0.934 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.627 -1.746 -4.872 10.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.109 4.109 3 C -0.143 4.143 4 C -0.142 4.142 5 C -0.012 4.012 6 N -0.277 5.277 7 C -0.107 4.107 8 C 0.117 3.883 9 N -0.159 5.159 10 N -0.200 5.200 11 C 0.104 3.896 12 C -0.492 4.492 13 H 0.136 0.864 14 C -0.187 4.187 15 N -0.399 5.399 16 Si 0.824 3.176 17 H -0.187 1.187 18 H -0.197 1.197 19 H -0.171 1.171 20 N -0.219 5.219 21 C -0.046 4.046 22 C 0.095 3.905 23 S -0.616 6.616 24 C -0.188 4.188 25 C -0.141 4.141 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.098 0.902 35 H 0.049 0.951 36 H 0.100 0.900 37 H 0.056 0.944 38 H 0.085 0.915 39 H 0.122 0.878 40 H 0.102 0.898 41 H 0.100 0.900 42 H 0.106 0.894 43 H 0.125 0.875 44 H 0.081 0.919 45 H 0.071 0.929 46 H 0.085 0.915 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.597 -1.502 -4.977 10.914 hybrid contribution 1.263 -1.170 -0.029 1.722 sum -8.334 -2.672 -5.005 10.082 Atomic orbital electron populations 1.21789 0.94068 1.02023 1.02154 1.21138 0.96251 0.95630 0.97898 1.21542 0.93298 0.96791 1.02668 1.21538 0.96457 1.00059 0.96163 1.21737 0.83273 0.95818 1.00330 1.62019 1.09237 1.54931 1.01470 1.22222 0.99397 0.96024 0.93064 1.21755 0.73711 0.98081 0.94760 1.49463 1.08169 1.14606 1.43709 1.79274 0.92239 1.14612 1.33909 1.21702 0.96209 0.81298 0.90401 1.18902 0.89480 1.05558 1.35217 0.86437 1.26860 1.03076 0.95690 0.93046 1.69962 1.31774 1.12621 1.25522 0.84822 0.75503 0.78875 0.78353 1.18680 1.19671 1.17064 1.46248 1.05146 1.20824 1.49670 1.22026 0.89193 0.92186 1.01201 1.22832 0.85438 0.91305 0.90900 1.92604 1.73403 1.29541 1.66026 1.22211 0.97978 0.97003 1.01610 1.21500 0.93062 1.00971 0.98569 0.92123 0.92338 0.92473 0.91558 0.91656 0.90672 0.92420 0.91907 0.90227 0.95052 0.90042 0.94418 0.91516 0.87826 0.89812 0.89977 0.89404 0.87521 0.91945 0.92881 0.91550 0.91238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.19 71.98 0.66 -1.31 16 2 C -0.09 -1.54 2.72 -10.79 -0.03 -1.57 16 3 C -0.11 -1.95 5.20 30.59 0.16 -1.80 16 4 C -0.10 -2.53 5.01 30.59 0.15 -2.38 16 5 C 0.10 2.69 2.22 44.92 0.10 2.79 16 6 N -0.55 -20.00 4.89 -909.41 -4.45 -24.45 16 7 C 0.04 1.48 8.62 127.69 1.10 2.58 16 8 C 0.33 13.23 5.35 170.81 0.91 14.14 16 9 N -0.37 -17.90 3.34 -359.74 -1.20 -19.10 16 10 N -0.37 -18.91 9.81 -55.17 -0.54 -19.45 16 11 C 0.35 17.43 7.50 133.52 1.00 18.43 16 12 C -0.45 -20.49 8.98 23.16 0.21 -20.29 16 13 H 0.12 4.68 7.11 -2.91 -0.02 4.66 16 14 C 0.04 1.59 5.50 85.28 0.47 2.06 16 15 N -0.77 -36.85 11.90 21.84 0.26 -36.59 16 16 Si 1.01 32.37 29.56 68.60 2.03 34.40 16 17 H -0.26 -8.25 7.11 99.48 0.71 -7.54 16 18 H -0.27 -8.63 7.11 99.48 0.71 -7.92 16 19 H -0.25 -7.46 7.11 99.48 0.71 -6.76 16 20 N -0.52 -23.90 3.17 -548.30 -1.74 -25.64 16 21 C 0.10 3.39 10.65 127.77 1.36 4.75 16 22 C 0.47 23.00 7.84 179.06 1.40 24.41 16 23 S -0.74 -37.69 29.50 -56.49 -1.67 -39.35 16 24 C -0.15 -3.61 4.51 30.61 0.14 -3.48 16 25 C -0.10 -1.95 5.21 30.61 0.16 -1.79 16 26 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 30 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 32 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 33 H 0.06 1.52 6.34 -2.39 -0.02 1.50 16 34 H 0.08 2.33 8.03 -2.38 -0.02 2.31 16 35 H 0.03 1.10 6.51 -2.39 -0.02 1.08 16 36 H 0.08 2.58 6.13 -2.38 -0.01 2.56 16 37 H 0.04 1.69 6.85 -2.38 -0.02 1.67 16 38 H 0.07 2.61 6.94 -2.38 -0.02 2.59 16 39 H 0.10 4.21 7.50 -2.39 -0.02 4.19 16 40 H 0.29 12.54 8.30 -92.71 -0.77 11.77 16 41 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 42 H 0.09 3.15 7.61 -2.39 -0.02 3.14 16 43 H 0.11 3.24 7.31 -2.38 -0.02 3.22 16 44 H 0.06 1.58 6.48 -2.39 -0.02 1.57 16 45 H 0.05 1.38 6.75 -2.38 -0.02 1.36 16 46 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 47 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -63.31 375.26 1.45 -61.86 By element: Atomic # 1 Polarization: 30.80 SS G_CDS: 0.95 Total: 31.75 kcal Atomic # 6 Polarization: 28.77 SS G_CDS: 7.80 Total: 36.57 kcal Atomic # 7 Polarization: -117.55 SS G_CDS: -7.66 Total: -125.22 kcal Atomic # 14 Polarization: 32.37 SS G_CDS: 2.03 Total: 34.40 kcal Atomic # 16 Polarization: -37.69 SS G_CDS: -1.67 Total: -39.35 kcal Total: -63.31 1.45 -61.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794619278.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.308 kcal (2) G-P(sol) polarization free energy of solvation -63.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds