Wall clock time and date at job start Tue Mar 31 2020 15:15:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47011 * 2 1 4 4 C 1.53004 * 109.47064 * 120.00042 * 2 1 3 5 5 C 1.53119 * 109.52170 * 59.99973 * 4 2 1 6 6 C 1.53040 * 109.27415 * 177.62042 * 5 4 2 7 7 N 1.46843 * 109.52572 * 300.82004 * 6 5 4 8 8 C 1.46901 * 110.99993 * 185.84158 * 7 6 5 9 9 N 1.46500 * 109.47260 * 170.00047 * 8 7 6 10 10 N 1.40161 * 126.14641 * 270.29630 * 9 8 7 11 11 C 1.32236 * 107.75915 * 180.10800 * 10 9 8 12 12 C 1.40119 * 125.92639 * 179.91143 * 11 10 9 13 13 H 1.08000 * 120.00464 * 179.68832 * 12 11 10 14 14 C 1.40045 * 120.00030 * 359.68560 * 12 11 10 15 15 N 1.30794 * 119.99861 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 119.99882 * 179.72736 * 14 12 11 17 17 H 1.48504 * 109.47032 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.46816 * 120.00233 * 16 14 12 19 19 H 1.48495 * 109.46630 * 240.00021 * 16 14 12 20 20 N 1.38499 * 108.14926 * 359.64014 * 11 10 9 21 21 C 1.46493 * 125.83969 * 180.22535 * 20 11 10 22 22 C 1.34730 * 108.32529 * 0.23441 * 20 11 10 23 23 S 1.71199 * 125.96937 * 179.97438 * 22 20 11 24 24 C 1.46846 * 111.19697 * 61.74525 * 7 6 5 25 25 C 1.53036 * 109.52455 * 298.25465 * 24 7 6 26 26 H 1.09007 * 109.46868 * 299.99999 * 1 2 3 27 27 H 1.09003 * 109.47263 * 59.99897 * 1 2 3 28 28 H 1.09002 * 109.47463 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47156 * 240.00247 * 2 1 3 30 30 H 1.08998 * 109.46744 * 180.02562 * 3 2 1 31 31 H 1.08991 * 109.47212 * 299.99728 * 3 2 1 32 32 H 1.09000 * 109.46959 * 60.00127 * 3 2 1 33 33 H 1.08997 * 109.52152 * 299.87112 * 4 2 1 34 34 H 1.09003 * 109.49951 * 57.68369 * 5 4 2 35 35 H 1.08992 * 109.53720 * 297.58030 * 5 4 2 36 36 H 1.09009 * 109.45925 * 180.80555 * 6 5 4 37 37 H 1.09002 * 109.45499 * 60.83688 * 6 5 4 38 38 H 1.09005 * 109.47190 * 50.00247 * 8 7 6 39 39 H 1.08994 * 109.46997 * 290.00243 * 8 7 6 40 40 H 0.97000 * 119.99627 * 179.97438 * 15 14 12 41 41 H 1.09004 * 109.46943 * 90.00245 * 21 20 11 42 42 H 1.08999 * 109.47470 * 210.00371 * 21 20 11 43 43 H 1.09002 * 109.47412 * 330.00752 * 21 20 11 44 44 H 1.09003 * 109.46272 * 58.27301 * 24 7 6 45 45 H 1.09003 * 109.46014 * 178.24370 * 24 7 6 46 46 H 1.09003 * 109.50695 * 299.24437 * 25 24 7 47 47 H 1.08993 * 109.53926 * 179.14183 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.5302 -2.1651 1.2504 6 6 2.0918 -2.8982 2.4708 7 7 3.5593 -2.8783 2.4229 8 6 4.1324 -3.6909 3.5042 9 7 5.5733 -3.8448 3.2884 10 7 6.1953 -4.8665 2.5578 11 6 7.5000 -4.6550 2.5993 12 6 8.4815 -5.4511 1.9942 13 1 9.5244 -5.1855 2.0856 14 6 8.1103 -6.5914 1.2708 15 7 6.8474 -6.9129 1.1596 16 14 9.4184 -7.6485 0.4576 17 1 10.7595 -7.0700 0.7259 18 1 9.3546 -9.0259 1.0087 19 1 9.1807 -7.6900 -1.0076 20 7 7.7277 -3.5068 3.3395 21 6 9.0374 -2.9160 3.6252 22 6 6.5386 -3.0261 3.7521 23 16 6.2962 -1.6212 4.7000 24 6 4.0735 -1.5036 2.4685 25 6 3.5712 -0.7288 1.2481 26 1 -0.3633 0.5139 0.8901 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6790 -0.2068 2.1398 34 1 1.8590 -2.6678 0.3408 35 1 0.4412 -2.1671 1.2941 36 1 1.7422 -3.9307 2.4669 37 1 1.7514 -2.4030 3.3802 38 1 3.6592 -4.6728 3.5108 39 1 3.9589 -3.1975 4.4605 40 1 6.5903 -7.7025 0.6582 41 1 9.2940 -2.2044 2.8404 42 1 9.0022 -2.4011 4.5852 43 1 9.7907 -3.7030 3.6623 44 1 3.7238 -1.0150 3.3780 45 1 5.1634 -1.5231 2.4629 46 1 3.9320 -1.2090 0.3384 47 1 3.9402 0.2959 1.2896 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000794635962.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:15 Heat of formation + Delta-G solvation = 49.534529 kcal Electronic energy + Delta-G solvation = -26396.732721 eV Core-core repulsion = 22933.813160 eV Total energy + Delta-G solvation = -3462.919561 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.168 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.68429 -40.41458 -37.58977 -35.90973 -35.51648 -33.00461 -32.10362 -31.69097 -29.23216 -28.32459 -28.00492 -26.58266 -24.47894 -23.90474 -23.01302 -22.63971 -21.15459 -20.59190 -19.51072 -18.40600 -17.77801 -17.45705 -16.66525 -16.53205 -16.43516 -15.91298 -15.45105 -15.19595 -15.05902 -15.04905 -14.70884 -14.28711 -13.86247 -13.73789 -13.55946 -13.44351 -13.41659 -13.07075 -13.01408 -12.76851 -12.68523 -12.55184 -12.44624 -12.27606 -12.08530 -11.94552 -11.84086 -11.72062 -11.39882 -11.37114 -11.14521 -10.97931 -10.82252 -10.64162 -9.47234 -8.78448 -8.63786 -8.52475 -6.97145 0.50260 0.77408 1.27667 1.44897 1.61969 1.63844 1.85786 2.12432 2.40176 2.87106 3.09733 3.56832 3.73470 3.78418 3.82893 4.03398 4.08027 4.21333 4.29400 4.34248 4.41603 4.43142 4.54545 4.56712 4.60317 4.61422 4.68814 4.78247 4.81840 4.87509 4.95752 5.01110 5.04292 5.05851 5.09336 5.10479 5.13046 5.16902 5.25881 5.34750 5.39481 5.51703 5.59161 5.74817 5.90454 5.94302 6.21066 6.47730 6.57170 7.32736 8.25490 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.013716 B = 0.003765 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.857003 B = 7435.121295 C = 8414.570530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.088 4.088 3 C -0.148 4.148 4 C -0.075 4.075 5 C -0.102 4.102 6 C 0.060 3.940 7 N -0.558 5.558 8 C 0.321 3.679 9 N -0.368 5.368 10 N -0.364 5.364 11 C 0.351 3.649 12 C -0.452 4.452 13 H 0.119 0.881 14 C 0.034 3.966 15 N -0.775 5.775 16 Si 1.007 2.993 17 H -0.244 1.244 18 H -0.267 1.267 19 H -0.269 1.269 20 N -0.517 5.517 21 C 0.095 3.905 22 C 0.454 3.546 23 S -0.735 6.735 24 C 0.072 3.928 25 C -0.102 4.102 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.046 0.954 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.069 0.931 34 H 0.057 0.943 35 H 0.096 0.904 36 H 0.085 0.915 37 H 0.044 0.956 38 H 0.109 0.891 39 H 0.071 0.929 40 H 0.292 0.708 41 H 0.079 0.921 42 H 0.090 0.910 43 H 0.107 0.893 44 H 0.032 0.968 45 H 0.044 0.956 46 H 0.046 0.954 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.995 4.897 -4.245 9.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.106 4.106 3 C -0.205 4.205 4 C -0.093 4.093 5 C -0.139 4.139 6 C -0.068 4.068 7 N -0.285 5.285 8 C 0.110 3.890 9 N -0.154 5.154 10 N -0.196 5.196 11 C 0.102 3.898 12 C -0.494 4.494 13 H 0.137 0.863 14 C -0.189 4.189 15 N -0.399 5.399 16 Si 0.826 3.174 17 H -0.166 1.166 18 H -0.192 1.192 19 H -0.194 1.194 20 N -0.217 5.217 21 C -0.047 4.047 22 C 0.083 3.917 23 S -0.611 6.611 24 C -0.056 4.056 25 C -0.140 4.140 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.065 0.935 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.076 0.924 35 H 0.115 0.885 36 H 0.103 0.897 37 H 0.062 0.938 38 H 0.127 0.873 39 H 0.089 0.911 40 H 0.102 0.898 41 H 0.098 0.902 42 H 0.108 0.892 43 H 0.126 0.874 44 H 0.051 0.949 45 H 0.062 0.938 46 H 0.065 0.935 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.016 4.752 -4.543 10.367 hybrid contribution 1.105 -0.360 0.399 1.229 sum -6.911 4.393 -4.144 9.178 Atomic orbital electron populations 1.21853 0.93889 1.02265 1.02078 1.21091 0.96698 0.95962 0.96880 1.21876 1.00721 0.95862 1.02074 1.21203 0.93426 0.95976 0.98741 1.21646 1.00826 0.94414 0.97057 1.22141 0.84022 1.01783 0.98815 1.61858 1.08878 1.12211 1.45522 1.21831 0.73976 0.99660 0.93507 1.49476 1.06938 1.19422 1.39534 1.79338 1.03535 1.10453 1.26279 1.21743 0.92737 0.84558 0.90729 1.18952 0.93547 1.07227 1.29654 0.86348 1.26908 0.98751 0.98123 0.95076 1.69986 1.19017 1.22427 1.28516 0.84763 0.77893 0.77155 0.77628 1.16649 1.19170 1.19421 1.46264 1.07459 1.23417 1.44583 1.22035 0.79474 0.99805 1.03343 1.22948 0.84216 0.92435 0.92130 1.92623 1.93118 1.20721 1.54640 1.22116 0.98905 0.87137 0.97470 1.21621 0.96798 0.98977 0.96601 0.92376 0.92140 0.91967 0.92079 0.93479 0.91871 0.92482 0.91235 0.92394 0.88531 0.89681 0.93801 0.87276 0.91103 0.89766 0.90197 0.89151 0.87441 0.94934 0.93794 0.93482 0.91288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 8.84 71.98 0.64 -1.62 16 2 C -0.09 -1.75 2.51 -10.79 -0.03 -1.78 16 3 C -0.15 -2.82 8.85 71.98 0.64 -2.19 16 4 C -0.07 -1.79 1.84 -10.71 -0.02 -1.81 16 5 C -0.10 -2.38 4.95 30.65 0.15 -2.22 16 6 C 0.06 1.63 5.46 86.33 0.47 2.10 16 7 N -0.56 -20.44 4.80 -908.70 -4.36 -24.80 16 8 C 0.32 12.94 5.98 170.81 1.02 13.97 16 9 N -0.37 -17.71 3.57 -359.72 -1.28 -19.00 16 10 N -0.36 -19.26 10.77 -55.17 -0.59 -19.85 16 11 C 0.35 17.61 7.50 133.52 1.00 18.61 16 12 C -0.45 -20.95 8.98 23.17 0.21 -20.74 16 13 H 0.12 4.78 7.11 -2.91 -0.02 4.76 16 14 C 0.03 1.53 5.50 85.29 0.47 2.00 16 15 N -0.77 -37.95 11.90 21.85 0.26 -37.69 16 16 Si 1.01 32.90 29.56 68.60 2.03 34.93 16 17 H -0.24 -7.33 7.11 99.48 0.71 -6.62 16 18 H -0.27 -8.54 7.11 99.48 0.71 -7.83 16 19 H -0.27 -8.73 7.11 99.48 0.71 -8.02 16 20 N -0.52 -23.78 3.17 -548.32 -1.74 -25.51 16 21 C 0.09 3.35 10.65 127.77 1.36 4.71 16 22 C 0.45 22.01 6.58 179.06 1.18 23.19 16 23 S -0.73 -35.91 27.21 -56.49 -1.54 -37.44 16 24 C 0.07 2.71 4.31 86.33 0.37 3.09 16 25 C -0.10 -3.16 4.96 30.65 0.15 -3.01 16 26 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 27 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.06 0.92 6.49 -2.39 -0.02 0.91 16 29 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.05 1.00 6.50 -2.39 -0.02 0.98 16 31 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.10 1.72 6.57 -2.39 -0.02 1.70 16 36 H 0.08 2.14 8.02 -2.38 -0.02 2.12 16 37 H 0.04 1.12 8.14 -2.39 -0.02 1.11 16 38 H 0.11 4.13 7.99 -2.38 -0.02 4.11 16 39 H 0.07 2.85 7.63 -2.39 -0.02 2.83 16 40 H 0.29 12.87 8.30 -92.71 -0.77 12.10 16 41 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 42 H 0.09 3.17 7.61 -2.39 -0.02 3.15 16 43 H 0.11 3.23 7.32 -2.39 -0.02 3.22 16 44 H 0.03 1.27 8.10 -2.39 -0.02 1.25 16 45 H 0.04 2.03 5.14 -2.39 -0.01 2.02 16 46 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 47 H 0.07 2.05 6.58 -2.39 -0.02 2.04 16 Total: -1.00 -64.29 373.98 1.34 -62.95 By element: Atomic # 1 Polarization: 31.17 SS G_CDS: 0.95 Total: 32.12 kcal Atomic # 6 Polarization: 26.69 SS G_CDS: 7.61 Total: 34.30 kcal Atomic # 7 Polarization: -119.14 SS G_CDS: -7.71 Total: -126.86 kcal Atomic # 14 Polarization: 32.90 SS G_CDS: 2.03 Total: 34.93 kcal Atomic # 16 Polarization: -35.91 SS G_CDS: -1.54 Total: -37.44 kcal Total: -64.29 1.34 -62.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794635962.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.483 kcal (2) G-P(sol) polarization free energy of solvation -64.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds