Wall clock time and date at job start Tue Mar 31 2020 14:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46897 * 110.99740 * 2 1 4 4 N 1.46496 * 109.47307 * 66.05340 * 3 2 1 5 5 N 1.40162 * 126.14985 * 89.96857 * 4 3 2 6 6 C 1.32244 * 107.76224 * 180.02562 * 5 4 3 7 7 C 1.40118 * 125.92445 * 179.97438 * 6 5 4 8 8 H 1.08000 * 119.99397 * 180.02562 * 7 6 5 9 9 C 1.40029 * 120.00404 * 0.02562 * 7 6 5 10 10 N 1.30803 * 119.99966 * 0.02562 * 9 7 6 11 11 Si 1.86794 * 120.00129 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47464 * 59.99986 * 11 9 7 13 13 H 1.48501 * 109.47411 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.47275 * 299.99606 * 11 9 7 15 15 N 1.38500 * 108.14518 * 359.97438 * 6 5 4 16 16 C 1.46499 * 125.83468 * 180.02562 * 15 6 5 17 17 C 1.34729 * 108.32813 * 0.26532 * 15 6 5 18 18 S 1.71199 * 125.97189 * 179.74229 * 17 15 6 19 19 C 1.46896 * 110.99464 * 236.05267 * 2 1 3 20 20 H 1.08993 * 110.67821 * 64.65296 * 19 2 1 21 21 C 1.54897 * 110.75292 * 187.88848 * 19 2 1 22 22 C 1.54269 * 104.19568 * 156.25568 * 21 19 2 23 23 C 1.53878 * 106.59632 * 336.38981 * 22 21 19 24 24 C 1.53003 * 110.03170 * 119.29080 * 23 22 21 25 25 C 1.53007 * 110.03019 * 240.66472 * 23 22 21 26 26 C 1.54462 * 106.68643 * 0.15819 * 23 22 21 27 27 H 1.09000 * 109.47570 * 59.99346 * 1 2 3 28 28 H 1.08999 * 109.47158 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47131 * 299.99515 * 1 2 3 30 30 H 1.09001 * 109.47643 * 306.04627 * 3 2 1 31 31 H 1.09000 * 109.46854 * 186.05007 * 3 2 1 32 32 H 0.96997 * 119.99934 * 180.02562 * 10 9 7 33 33 H 1.09002 * 109.47391 * 89.99690 * 16 15 6 34 34 H 1.09001 * 109.46813 * 329.99747 * 16 15 6 35 35 H 1.09004 * 109.47041 * 209.99874 * 16 15 6 36 36 H 1.09001 * 110.48547 * 274.93123 * 21 19 2 37 37 H 1.08997 * 110.48812 * 37.57701 * 21 19 2 38 38 H 1.08996 * 110.03272 * 95.67543 * 22 21 19 39 39 H 1.09002 * 110.03341 * 217.05919 * 22 21 19 40 40 H 1.08990 * 109.47526 * 61.44899 * 24 23 22 41 41 H 1.08997 * 109.46746 * 181.45331 * 24 23 22 42 42 H 1.08998 * 109.46552 * 301.44825 * 24 23 22 43 43 H 1.08998 * 109.46713 * 58.54999 * 25 23 22 44 44 H 1.08998 * 109.47189 * 178.54615 * 25 23 22 45 45 H 1.08996 * 109.47374 * 298.55054 * 25 23 22 46 46 H 1.08996 * 110.40624 * 264.75591 * 26 23 22 47 47 H 1.09002 * 110.66048 * 142.05785 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 7 1.6470 2.0282 1.2623 5 7 2.4158 2.0278 2.4343 6 6 1.7613 2.7268 3.3463 7 6 2.1875 2.9684 4.6591 8 1 1.5738 3.5548 5.3267 9 6 3.4093 2.4495 5.1052 10 7 4.1528 1.7398 4.2964 11 14 3.9771 2.7711 6.8555 12 1 2.9824 2.2164 7.8085 13 1 5.2921 2.1176 7.0773 14 1 4.1082 4.2343 7.0725 15 7 0.5814 3.1785 2.7789 16 6 -0.4360 3.9923 3.4488 17 6 0.5268 2.7371 1.5071 18 16 -0.7417 3.0290 0.3950 19 6 1.9953 -0.7659 -1.1377 20 1 1.7257 -0.2894 -2.0801 21 6 3.5315 -0.9299 -1.0253 22 6 3.8396 -2.1896 -1.8608 23 6 2.5423 -3.0161 -1.9045 24 6 2.0736 -3.1796 -3.3518 25 6 2.7742 -4.3894 -1.2709 26 6 1.4872 -2.2285 -1.0969 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.5611 1.9274 -0.8309 31 1 3.0797 1.3444 -0.1083 32 1 4.9989 1.3801 4.6056 33 1 -0.2107 5.0487 3.3022 34 1 -0.4383 3.7658 4.5150 35 1 -1.4160 3.7680 3.0275 36 1 4.0395 -0.0610 -1.4438 37 1 3.8241 -1.0803 0.0138 38 1 4.1351 -1.9049 -2.8705 39 1 4.6346 -2.7661 -1.3878 40 1 2.8333 -3.7145 -3.9215 41 1 1.1412 -3.7438 -3.3701 42 1 1.9123 -2.1967 -3.7946 43 1 3.1087 -4.2626 -0.2413 44 1 1.8438 -4.9571 -1.2834 45 1 3.5353 -4.9267 -1.8367 46 1 1.4474 -2.5900 -0.0695 47 1 0.5069 -2.3050 -1.5674 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794688669.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:49 Heat of formation + Delta-G solvation = 69.359203 kcal Electronic energy + Delta-G solvation = -26398.551084 eV Core-core repulsion = 22936.491186 eV Total energy + Delta-G solvation = -3462.059898 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.89539 -39.41374 -36.50846 -34.15672 -33.76174 -31.39969 -30.55670 -28.74456 -27.54228 -27.34302 -26.57172 -26.15058 -24.15889 -22.72191 -21.42725 -20.87942 -19.74609 -18.69360 -17.76320 -16.68272 -16.18861 -15.73720 -15.54969 -15.16160 -14.77271 -14.71573 -14.14240 -13.92728 -13.74248 -13.43748 -13.32397 -13.16955 -12.79814 -12.31477 -12.20548 -12.08897 -11.95762 -11.81228 -11.58107 -11.53095 -11.49032 -11.07273 -10.94529 -10.74277 -10.66178 -10.60826 -10.54585 -10.53484 -10.46127 -10.36692 -10.01894 -9.52970 -9.19302 -8.86270 -8.04211 -7.02686 -6.79077 -6.63430 -5.12582 2.31152 2.56482 2.80909 2.91657 2.93885 3.35335 3.54739 3.65704 4.04778 4.30713 4.49586 4.64966 4.81073 4.86252 5.18974 5.23110 5.29816 5.36098 5.47095 5.48457 5.52811 5.55938 5.62701 5.73623 5.76770 5.84580 5.85604 5.92180 5.95038 5.99321 6.05707 6.08190 6.12674 6.16193 6.20432 6.29983 6.35626 6.43151 6.47758 6.56042 6.64916 6.81683 7.00573 7.25676 7.33669 7.60858 7.80647 8.24447 8.36392 9.16214 9.94951 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.012485 B = 0.004029 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2242.129999 B = 6947.482730 C = 8698.675980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.543 5.543 3 C 0.324 3.676 4 N -0.368 5.368 5 N -0.329 5.329 6 C 0.372 3.628 7 C -0.439 4.439 8 H 0.096 0.904 9 C 0.077 3.923 10 N -0.736 5.736 11 Si 0.928 3.072 12 H -0.262 1.262 13 H -0.274 1.274 14 H -0.262 1.262 15 N -0.514 5.514 16 C 0.100 3.900 17 C 0.464 3.536 18 S -0.717 6.717 19 C 0.086 3.914 20 H 0.048 0.952 21 C -0.119 4.119 22 C -0.112 4.112 23 C -0.069 4.069 24 C -0.138 4.138 25 C -0.137 4.137 26 C -0.103 4.103 27 H 0.040 0.960 28 H 0.055 0.945 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.102 0.898 32 H 0.286 0.714 33 H 0.066 0.934 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.062 0.938 37 H 0.082 0.918 38 H 0.062 0.938 39 H 0.065 0.935 40 H 0.052 0.948 41 H 0.052 0.948 42 H 0.055 0.945 43 H 0.057 0.943 44 H 0.052 0.948 45 H 0.052 0.948 46 H 0.077 0.923 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.350 -7.394 -5.516 9.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.269 5.269 3 C 0.113 3.887 4 N -0.153 5.153 5 N -0.160 5.160 6 C 0.122 3.878 7 C -0.481 4.481 8 H 0.114 0.886 9 C -0.150 4.150 10 N -0.360 5.360 11 Si 0.751 3.249 12 H -0.187 1.187 13 H -0.199 1.199 14 H -0.187 1.187 15 N -0.215 5.215 16 C -0.043 4.043 17 C 0.094 3.906 18 S -0.593 6.593 19 C -0.023 4.023 20 H 0.066 0.934 21 C -0.157 4.157 22 C -0.150 4.150 23 C -0.070 4.070 24 C -0.195 4.195 25 C -0.195 4.195 26 C -0.140 4.140 27 H 0.059 0.941 28 H 0.074 0.926 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.120 0.880 32 H 0.097 0.903 33 H 0.085 0.915 34 H 0.102 0.898 35 H 0.108 0.892 36 H 0.080 0.920 37 H 0.101 0.899 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.071 0.929 45 H 0.071 0.929 46 H 0.096 0.904 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.879 -8.163 -6.052 10.334 hybrid contribution -0.027 0.815 0.843 1.174 sum 1.852 -7.348 -5.208 9.195 Atomic orbital electron populations 1.22589 0.85867 1.00556 1.02775 1.62001 1.09143 1.13037 1.42724 1.21695 0.99972 0.86094 0.80963 1.49173 1.14094 1.39097 1.12945 1.79438 1.15117 1.32163 0.89278 1.21337 0.80305 0.90776 0.95346 1.18304 1.04908 1.32403 0.92448 0.88566 1.25823 0.95499 0.93356 1.00339 1.69872 1.09636 1.20612 1.35842 0.86027 0.78653 0.79807 0.80403 1.18651 1.19899 1.18661 1.45976 1.20215 1.45614 1.09697 1.21757 0.90911 0.94141 0.97503 1.22908 0.90975 0.88816 0.87891 1.92717 1.34452 1.83753 1.48356 1.22511 0.95003 0.93750 0.90989 0.93421 1.22449 0.94504 0.97239 1.01537 1.22230 0.96756 0.96088 0.99929 1.21168 0.95284 0.95286 0.95229 1.21919 1.00713 1.01529 0.95335 1.21896 1.01165 0.95734 1.00673 1.22528 0.97383 0.93387 1.00748 0.94141 0.92607 0.90864 0.91055 0.87968 0.90300 0.91512 0.89773 0.89219 0.91973 0.89936 0.91946 0.91625 0.92907 0.92857 0.92624 0.92359 0.92907 0.92940 0.90396 0.91836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 8.05 60.07 0.48 1.04 16 2 N -0.54 -9.77 4.80 -236.39 -1.13 -10.90 16 3 C 0.32 6.39 5.87 -63.32 -0.37 6.02 16 4 N -0.37 -8.61 3.58 -65.05 -0.23 -8.84 16 5 N -0.33 -8.48 10.77 31.21 0.34 -8.14 16 6 C 0.37 9.22 7.50 -155.27 -1.16 8.06 16 7 C -0.44 -10.29 8.98 -38.21 -0.34 -10.63 16 8 H 0.10 2.02 7.11 -52.49 -0.37 1.64 16 9 C 0.08 1.73 5.50 -17.32 -0.10 1.64 16 10 N -0.74 -17.87 11.90 55.55 0.66 -17.21 16 11 Si 0.93 16.66 29.56 -169.99 -5.02 11.64 16 12 H -0.26 -4.64 7.11 56.52 0.40 -4.23 16 13 H -0.27 -4.87 7.11 56.52 0.40 -4.46 16 14 H -0.26 -4.62 7.11 56.52 0.40 -4.22 16 15 N -0.51 -11.73 3.17 -124.65 -0.39 -12.13 16 16 C 0.10 1.80 10.65 59.85 0.64 2.43 16 17 C 0.46 11.02 6.61 -86.93 -0.57 10.45 16 18 S -0.72 -17.24 27.06 -107.50 -2.91 -20.15 16 19 C 0.09 1.23 2.58 -65.72 -0.17 1.06 16 20 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 21 C -0.12 -1.59 5.37 -25.07 -0.13 -1.72 16 22 C -0.11 -1.22 6.11 -25.61 -0.16 -1.38 16 23 C -0.07 -0.73 0.94 -153.28 -0.14 -0.88 16 24 C -0.14 -1.28 8.14 37.16 0.30 -0.98 16 25 C -0.14 -1.34 8.16 37.16 0.30 -1.04 16 26 C -0.10 -1.30 4.18 -24.97 -0.10 -1.40 16 27 H 0.04 0.76 7.81 -51.93 -0.41 0.36 16 28 H 0.06 0.92 6.80 -51.93 -0.35 0.56 16 29 H 0.07 1.61 5.67 -51.93 -0.29 1.32 16 30 H 0.07 1.41 7.63 -51.93 -0.40 1.01 16 31 H 0.10 1.92 6.73 -51.93 -0.35 1.57 16 32 H 0.29 6.31 8.30 -40.82 -0.34 5.97 16 33 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.08 1.33 7.32 -51.93 -0.38 0.95 16 35 H 0.09 1.59 7.60 -51.93 -0.39 1.19 16 36 H 0.06 0.79 7.73 -51.93 -0.40 0.39 16 37 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 38 H 0.06 0.62 7.67 -51.93 -0.40 0.22 16 39 H 0.06 0.69 7.67 -51.93 -0.40 0.29 16 40 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 46 H 0.08 1.10 7.86 -51.93 -0.41 0.69 16 47 H 0.06 0.77 7.58 -51.93 -0.39 0.38 16 LS Contribution 377.55 15.07 5.69 5.69 Total: -1.00 -29.07 377.55 -12.43 -41.49 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -7.89 Total: 5.89 kcal Atomic # 6 Polarization: 14.20 SS G_CDS: -1.53 Total: 12.67 kcal Atomic # 7 Polarization: -56.46 SS G_CDS: -0.76 Total: -57.23 kcal Atomic # 14 Polarization: 16.66 SS G_CDS: -5.02 Total: 11.64 kcal Atomic # 16 Polarization: -17.24 SS G_CDS: -2.91 Total: -20.15 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -29.07 -12.43 -41.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794688669.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.851 kcal (2) G-P(sol) polarization free energy of solvation -29.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds