Wall clock time and date at job start Tue Mar 31 2020 14:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46897 * 110.99740 * 2 1 4 4 N 1.46496 * 109.47307 * 66.05340 * 3 2 1 5 5 N 1.40162 * 126.14985 * 89.96857 * 4 3 2 6 6 C 1.32244 * 107.76224 * 180.02562 * 5 4 3 7 7 C 1.40118 * 125.92445 * 179.97438 * 6 5 4 8 8 H 1.08000 * 119.99397 * 180.02562 * 7 6 5 9 9 C 1.40029 * 120.00404 * 0.02562 * 7 6 5 10 10 N 1.30803 * 119.99966 * 0.02562 * 9 7 6 11 11 Si 1.86794 * 120.00129 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47464 * 59.99986 * 11 9 7 13 13 H 1.48501 * 109.47411 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.47275 * 299.99606 * 11 9 7 15 15 N 1.38500 * 108.14518 * 359.97438 * 6 5 4 16 16 C 1.46499 * 125.83468 * 180.02562 * 15 6 5 17 17 C 1.34729 * 108.32813 * 0.26532 * 15 6 5 18 18 S 1.71199 * 125.97189 * 179.74229 * 17 15 6 19 19 C 1.46896 * 110.99464 * 236.05267 * 2 1 3 20 20 H 1.08993 * 110.67821 * 64.65296 * 19 2 1 21 21 C 1.54897 * 110.75292 * 187.88848 * 19 2 1 22 22 C 1.54269 * 104.19568 * 156.25568 * 21 19 2 23 23 C 1.53878 * 106.59632 * 336.38981 * 22 21 19 24 24 C 1.53003 * 110.03170 * 119.29080 * 23 22 21 25 25 C 1.53007 * 110.03019 * 240.66472 * 23 22 21 26 26 C 1.54462 * 106.68643 * 0.15819 * 23 22 21 27 27 H 1.09000 * 109.47570 * 59.99346 * 1 2 3 28 28 H 1.08999 * 109.47158 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47131 * 299.99515 * 1 2 3 30 30 H 1.09001 * 109.47643 * 306.04627 * 3 2 1 31 31 H 1.09000 * 109.46854 * 186.05007 * 3 2 1 32 32 H 0.96997 * 119.99934 * 180.02562 * 10 9 7 33 33 H 1.09002 * 109.47391 * 89.99690 * 16 15 6 34 34 H 1.09001 * 109.46813 * 329.99747 * 16 15 6 35 35 H 1.09004 * 109.47041 * 209.99874 * 16 15 6 36 36 H 1.09001 * 110.48547 * 274.93123 * 21 19 2 37 37 H 1.08997 * 110.48812 * 37.57701 * 21 19 2 38 38 H 1.08996 * 110.03272 * 95.67543 * 22 21 19 39 39 H 1.09002 * 110.03341 * 217.05919 * 22 21 19 40 40 H 1.08990 * 109.47526 * 61.44899 * 24 23 22 41 41 H 1.08997 * 109.46746 * 181.45331 * 24 23 22 42 42 H 1.08998 * 109.46552 * 301.44825 * 24 23 22 43 43 H 1.08998 * 109.46713 * 58.54999 * 25 23 22 44 44 H 1.08998 * 109.47189 * 178.54615 * 25 23 22 45 45 H 1.08996 * 109.47374 * 298.55054 * 25 23 22 46 46 H 1.08996 * 110.40624 * 264.75591 * 26 23 22 47 47 H 1.09002 * 110.66048 * 142.05785 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 7 1.6470 2.0282 1.2623 5 7 2.4158 2.0278 2.4343 6 6 1.7613 2.7268 3.3463 7 6 2.1875 2.9684 4.6591 8 1 1.5738 3.5548 5.3267 9 6 3.4093 2.4495 5.1052 10 7 4.1528 1.7398 4.2964 11 14 3.9771 2.7711 6.8555 12 1 2.9824 2.2164 7.8085 13 1 5.2921 2.1176 7.0773 14 1 4.1082 4.2343 7.0725 15 7 0.5814 3.1785 2.7789 16 6 -0.4360 3.9923 3.4488 17 6 0.5268 2.7371 1.5071 18 16 -0.7417 3.0290 0.3950 19 6 1.9953 -0.7659 -1.1377 20 1 1.7257 -0.2894 -2.0801 21 6 3.5315 -0.9299 -1.0253 22 6 3.8396 -2.1896 -1.8608 23 6 2.5423 -3.0161 -1.9045 24 6 2.0736 -3.1796 -3.3518 25 6 2.7742 -4.3894 -1.2709 26 6 1.4872 -2.2285 -1.0969 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.5611 1.9274 -0.8309 31 1 3.0797 1.3444 -0.1083 32 1 4.9989 1.3801 4.6056 33 1 -0.2107 5.0487 3.3022 34 1 -0.4383 3.7658 4.5150 35 1 -1.4160 3.7680 3.0275 36 1 4.0395 -0.0610 -1.4438 37 1 3.8241 -1.0803 0.0138 38 1 4.1351 -1.9049 -2.8705 39 1 4.6346 -2.7661 -1.3878 40 1 2.8333 -3.7145 -3.9215 41 1 1.1412 -3.7438 -3.3701 42 1 1.9123 -2.1967 -3.7946 43 1 3.1087 -4.2626 -0.2413 44 1 1.8438 -4.9571 -1.2834 45 1 3.5353 -4.9267 -1.8367 46 1 1.4474 -2.5900 -0.0695 47 1 0.5069 -2.3050 -1.5674 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000794688669.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:48 Heat of formation + Delta-G solvation = 55.175289 kcal Electronic energy + Delta-G solvation = -26399.166145 eV Core-core repulsion = 22936.491186 eV Total energy + Delta-G solvation = -3462.674959 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.67365 -40.52083 -37.86585 -35.85656 -35.40387 -32.72192 -32.04645 -30.18744 -28.81202 -28.32426 -28.11727 -27.60718 -25.50106 -24.02539 -23.10035 -22.65237 -20.98557 -19.66770 -19.45649 -18.40202 -17.61555 -17.46518 -16.94919 -16.63544 -16.38491 -16.08611 -15.59234 -15.11584 -14.99311 -14.56295 -14.32475 -14.21265 -14.09611 -13.83742 -13.71213 -13.46230 -13.30165 -13.05923 -12.99856 -12.87785 -12.70354 -12.49236 -12.39617 -12.16983 -12.03768 -11.86554 -11.74110 -11.62904 -11.43660 -11.38872 -11.36608 -11.29687 -10.88073 -10.65139 -9.51677 -8.78615 -8.64787 -8.50629 -6.96981 0.50453 0.77514 1.30398 1.44810 1.58941 1.63149 1.86844 2.12724 2.39999 2.85410 3.10200 3.46174 3.58708 3.66548 3.86584 4.03400 4.06978 4.23010 4.29359 4.40486 4.43668 4.44411 4.49710 4.53922 4.60429 4.61475 4.68640 4.74500 4.86178 4.87589 4.89776 4.98403 5.00538 5.05217 5.09640 5.11918 5.15454 5.18759 5.26141 5.32166 5.39950 5.44018 5.59667 5.73212 5.83229 5.93430 6.19891 6.48092 6.57194 7.32995 8.25689 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.012485 B = 0.004029 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2242.129999 B = 6947.482730 C = 8698.675980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 N -0.552 5.552 3 C 0.324 3.676 4 N -0.368 5.368 5 N -0.363 5.363 6 C 0.351 3.649 7 C -0.453 4.453 8 H 0.119 0.881 9 C 0.035 3.965 10 N -0.775 5.775 11 Si 1.006 2.994 12 H -0.254 1.254 13 H -0.273 1.273 14 H -0.253 1.253 15 N -0.517 5.517 16 C 0.095 3.905 17 C 0.454 3.546 18 S -0.735 6.735 19 C 0.084 3.916 20 H 0.056 0.944 21 C -0.117 4.117 22 C -0.106 4.106 23 C -0.065 4.065 24 C -0.135 4.135 25 C -0.135 4.135 26 C -0.098 4.098 27 H 0.034 0.966 28 H 0.074 0.926 29 H 0.036 0.964 30 H 0.069 0.931 31 H 0.106 0.894 32 H 0.292 0.708 33 H 0.082 0.918 34 H 0.106 0.894 35 H 0.089 0.911 36 H 0.065 0.935 37 H 0.054 0.946 38 H 0.078 0.922 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.057 0.943 42 H 0.052 0.948 43 H 0.045 0.955 44 H 0.057 0.943 45 H 0.067 0.933 46 H 0.059 0.941 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.848 -7.969 -5.097 9.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 N -0.278 5.278 3 C 0.113 3.887 4 N -0.154 5.154 5 N -0.196 5.196 6 C 0.103 3.897 7 C -0.495 4.495 8 H 0.137 0.863 9 C -0.188 4.188 10 N -0.399 5.399 11 Si 0.825 3.175 12 H -0.178 1.178 13 H -0.197 1.197 14 H -0.176 1.176 15 N -0.217 5.217 16 C -0.047 4.047 17 C 0.083 3.917 18 S -0.612 6.612 19 C -0.024 4.024 20 H 0.074 0.926 21 C -0.155 4.155 22 C -0.144 4.144 23 C -0.066 4.066 24 C -0.192 4.192 25 C -0.193 4.193 26 C -0.136 4.136 27 H 0.052 0.948 28 H 0.093 0.907 29 H 0.055 0.945 30 H 0.087 0.913 31 H 0.124 0.876 32 H 0.102 0.898 33 H 0.100 0.900 34 H 0.125 0.875 35 H 0.108 0.892 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.097 0.903 39 H 0.089 0.911 40 H 0.085 0.915 41 H 0.077 0.923 42 H 0.071 0.929 43 H 0.064 0.936 44 H 0.076 0.924 45 H 0.086 0.914 46 H 0.078 0.922 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.356 -8.739 -5.653 10.672 hybrid contribution -0.165 0.984 0.714 1.227 sum 2.191 -7.755 -4.940 9.452 Atomic orbital electron populations 1.22338 0.86246 1.01006 1.00551 1.62014 1.08816 1.12159 1.44811 1.21796 1.00242 0.86918 0.79731 1.49466 1.13724 1.38972 1.13234 1.79346 1.16468 1.33438 0.90327 1.21732 0.80991 0.91082 0.95935 1.18892 1.05742 1.32557 0.92285 0.86331 1.26896 0.94980 0.92321 1.04606 1.69979 1.10265 1.21465 1.38225 0.84866 0.78094 0.79998 0.74549 1.17790 1.19712 1.17650 1.46266 1.20492 1.45625 1.09335 1.22041 0.89766 0.94410 0.98446 1.22951 0.91044 0.89338 0.88394 1.92609 1.35064 1.84490 1.49014 1.22679 0.95682 0.94199 0.89853 0.92643 1.22399 0.93742 0.98886 1.00451 1.22220 0.97146 0.94774 1.00246 1.21157 0.94212 0.95263 0.95941 1.21892 1.01415 1.01734 0.94142 1.21876 1.01926 0.95390 1.00081 1.22510 0.98553 0.92322 1.00254 0.94763 0.90706 0.94520 0.91291 0.87596 0.89764 0.89968 0.87533 0.89240 0.91646 0.92687 0.90324 0.91090 0.91472 0.92348 0.92863 0.93613 0.92369 0.91411 0.92202 0.91180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.77 8.05 127.69 1.03 2.80 16 2 N -0.55 -20.36 4.80 -901.81 -4.33 -24.69 16 3 C 0.32 13.19 5.87 170.81 1.00 14.19 16 4 N -0.37 -17.77 3.58 -359.73 -1.29 -19.06 16 5 N -0.36 -19.26 10.77 -55.17 -0.59 -19.85 16 6 C 0.35 17.62 7.50 133.52 1.00 18.62 16 7 C -0.45 -20.99 8.98 23.16 0.21 -20.78 16 8 H 0.12 4.76 7.11 -2.91 -0.02 4.74 16 9 C 0.04 1.56 5.50 85.28 0.47 2.03 16 10 N -0.77 -37.97 11.90 21.84 0.26 -37.71 16 11 Si 1.01 32.87 29.56 68.60 2.03 34.89 16 12 H -0.25 -7.93 7.11 99.48 0.71 -7.23 16 13 H -0.27 -8.74 7.11 99.48 0.71 -8.03 16 14 H -0.25 -7.84 7.11 99.48 0.71 -7.13 16 15 N -0.52 -23.76 3.17 -548.29 -1.74 -25.50 16 16 C 0.09 3.33 10.65 127.77 1.36 4.69 16 17 C 0.45 22.03 6.61 179.06 1.18 23.21 16 18 S -0.74 -35.91 27.06 -56.49 -1.53 -37.44 16 19 C 0.08 2.38 2.58 46.21 0.12 2.50 16 20 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 21 C -0.12 -3.10 5.37 31.67 0.17 -2.93 16 22 C -0.11 -2.14 6.11 31.32 0.19 -1.95 16 23 C -0.07 -1.27 0.94 -51.39 -0.05 -1.32 16 24 C -0.13 -2.16 8.14 71.98 0.59 -1.58 16 25 C -0.14 -2.42 8.16 71.98 0.59 -1.83 16 26 C -0.10 -2.42 4.18 31.74 0.13 -2.29 16 27 H 0.03 1.31 7.81 -2.39 -0.02 1.29 16 28 H 0.07 2.48 6.80 -2.39 -0.02 2.46 16 29 H 0.04 1.65 5.67 -2.38 -0.01 1.64 16 30 H 0.07 2.81 7.63 -2.39 -0.02 2.79 16 31 H 0.11 4.15 6.73 -2.39 -0.02 4.13 16 32 H 0.29 12.96 8.30 -92.71 -0.77 12.20 16 33 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 34 H 0.11 3.21 7.32 -2.39 -0.02 3.20 16 35 H 0.09 3.14 7.60 -2.38 -0.02 3.12 16 36 H 0.06 1.66 7.73 -2.39 -0.02 1.64 16 37 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.08 1.36 7.67 -2.39 -0.02 1.35 16 39 H 0.07 1.38 7.67 -2.39 -0.02 1.36 16 40 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 46 H 0.06 1.69 7.86 -2.39 -0.02 1.68 16 47 H 0.07 1.62 7.58 -2.39 -0.02 1.60 16 Total: -1.00 -63.59 377.55 1.75 -61.84 By element: Atomic # 1 Polarization: 31.19 SS G_CDS: 0.95 Total: 32.14 kcal Atomic # 6 Polarization: 27.39 SS G_CDS: 7.99 Total: 35.38 kcal Atomic # 7 Polarization: -119.12 SS G_CDS: -7.68 Total: -126.81 kcal Atomic # 14 Polarization: 32.87 SS G_CDS: 2.03 Total: 34.89 kcal Atomic # 16 Polarization: -35.91 SS G_CDS: -1.53 Total: -37.44 kcal Total: -63.59 1.75 -61.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794688669.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.011 kcal (2) G-P(sol) polarization free energy of solvation -63.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds