Wall clock time and date at job start Tue Mar 31 2020 13:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00207 * 2 1 4 4 H 1.48500 * 109.47123 * 270.00109 * 3 2 1 5 5 H 1.48502 * 109.47063 * 30.00046 * 3 2 1 6 6 H 1.48500 * 109.47235 * 150.00409 * 3 2 1 7 7 C 1.37878 * 119.99923 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00047 * 158.92173 * 7 2 1 9 9 C 1.50705 * 119.99809 * 338.92570 * 7 2 1 10 10 C 1.53000 * 115.54988 * 323.67231 * 9 7 2 11 11 N 1.46499 * 109.46910 * 282.50556 * 10 9 7 12 12 C 1.34782 * 119.99645 * 175.19836 * 11 10 9 13 13 O 1.21589 * 120.00028 * 4.89375 * 12 11 10 14 14 N 1.34770 * 119.99868 * 184.89799 * 12 11 10 15 15 C 1.46934 * 120.63373 * 354.49022 * 14 12 11 16 16 C 1.53190 * 108.77211 * 233.58709 * 15 14 12 17 17 C 1.53037 * 109.31495 * 305.35796 * 16 15 14 18 18 C 1.53044 * 109.53500 * 61.36702 * 17 16 15 19 19 H 1.08999 * 109.49517 * 58.59329 * 18 17 16 20 20 C 1.53005 * 109.49501 * 178.64760 * 18 17 16 21 21 O 1.43750 * 109.63599 * 299.36908 * 20 18 17 22 22 C 1.44785 * 104.81362 * 215.80720 * 21 20 18 23 23 C 1.54915 * 101.72263 * 36.10426 * 22 21 20 24 24 O 1.43373 * 109.63038 * 180.02562 * 20 18 17 25 25 C 1.46927 * 120.62980 * 174.20690 * 14 12 11 26 26 C 1.53001 * 117.51856 * 109.37626 * 9 7 2 27 27 C 1.53003 * 117.49413 * 178.00563 * 9 7 2 28 28 H 0.97008 * 119.99942 * 5.01359 * 1 2 3 29 29 H 1.09004 * 109.46970 * 162.50622 * 10 9 7 30 30 H 1.09000 * 109.47119 * 42.50686 * 10 9 7 31 31 H 0.96999 * 120.00611 * 355.18976 * 11 10 9 32 32 H 1.09001 * 109.58071 * 353.37329 * 15 14 12 33 33 H 1.08998 * 109.58766 * 113.79683 * 15 14 12 34 34 H 1.08998 * 109.50323 * 65.31652 * 16 15 14 35 35 H 1.09003 * 109.49381 * 185.38100 * 16 15 14 36 36 H 1.08999 * 109.46641 * 181.39064 * 17 16 15 37 37 H 1.09000 * 109.46151 * 301.35529 * 17 16 15 38 38 H 1.09003 * 109.62339 * 59.61819 * 20 18 17 39 39 H 1.08993 * 110.97560 * 277.99409 * 22 21 20 40 40 H 1.09002 * 110.97497 * 154.21001 * 22 21 20 41 41 H 1.08994 * 110.69453 * 206.04072 * 23 22 21 42 42 H 1.09005 * 110.69554 * 82.82987 * 23 22 21 43 43 H 1.09001 * 109.59046 * 246.19809 * 25 14 12 44 44 H 1.08994 * 109.58749 * 6.63144 * 25 14 12 45 45 H 1.08995 * 117.49923 * 214.97301 * 26 9 7 46 46 H 1.09006 * 117.49743 * 359.97438 * 26 9 7 47 47 H 1.08989 * 117.50242 * 359.97438 * 27 9 7 48 48 H 1.09006 * 117.49646 * 144.99677 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0303 -1.2252 -0.3369 9 6 1.3265 -2.4557 0.4682 10 6 0.3534 -2.2869 1.6368 11 7 1.1080 -2.1576 2.8858 12 6 0.4614 -1.9013 4.0403 13 8 -0.7538 -1.8657 4.0615 14 7 1.1618 -1.6845 5.1711 15 6 2.6225 -1.8423 5.1889 16 6 3.0009 -2.8025 6.3209 17 6 2.4078 -2.2928 7.6364 18 6 0.8818 -2.2517 7.5278 19 1 0.5063 -3.2491 7.2994 20 6 0.2881 -1.7741 8.8547 21 8 0.6549 -2.6857 9.9039 22 6 -0.4979 -2.7261 10.7790 23 6 -1.6655 -2.6198 9.7664 24 8 -1.1417 -1.7350 8.7563 25 6 0.4799 -1.2798 6.4080 26 6 0.9867 -3.5097 -0.5875 27 6 2.1294 -3.7564 0.3997 28 1 -0.4850 0.8369 -0.0734 29 1 -0.2991 -3.1581 1.6950 30 1 -0.2487 -1.3917 1.4817 31 1 2.0730 -2.2565 2.8820 32 1 2.9575 -2.2511 4.2356 33 1 3.0927 -0.8737 5.3588 34 1 2.6055 -3.7948 6.1038 35 1 4.0863 -2.8541 6.4066 36 1 2.6962 -2.9610 8.4479 37 1 2.7844 -1.2905 7.8404 38 1 0.6668 -0.7790 9.0880 39 1 -0.4974 -1.8786 11.4643 40 1 -0.5400 -3.6681 11.3257 41 1 -2.5469 -2.1864 10.2390 42 1 -1.8963 -3.5964 9.3407 43 1 0.7789 -0.2663 6.6754 44 1 -0.5992 -1.3175 6.2594 45 1 0.0699 -4.0828 -0.4496 46 1 1.2531 -3.2906 -1.6215 47 1 3.1476 -3.6996 0.0152 48 1 1.9643 -4.4918 1.1871 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797561020.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:44 Heat of formation + Delta-G solvation = -86.701572 kcal Electronic energy + Delta-G solvation = -28867.549250 eV Core-core repulsion = 24923.676427 eV Total energy + Delta-G solvation = -3943.872823 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.78962 -39.70599 -37.44376 -36.47558 -35.26053 -33.59005 -32.55247 -32.21421 -31.61604 -29.48140 -26.43832 -25.47623 -25.23252 -24.07640 -23.47234 -22.05718 -21.25698 -20.60028 -19.27011 -19.02624 -17.84220 -17.48296 -16.91491 -16.31608 -15.89842 -15.51228 -15.11838 -14.92345 -14.64409 -14.28426 -14.22785 -13.96728 -13.81958 -13.61228 -13.22349 -13.10883 -12.97220 -12.91927 -12.52314 -12.37990 -11.82466 -11.70124 -11.52667 -11.42350 -11.01670 -10.96992 -10.85930 -10.74544 -10.54621 -10.51298 -10.47858 -10.27811 -9.77700 -9.59131 -9.28012 -9.20759 -8.76602 -8.41538 -8.14546 -7.72888 -6.10925 -4.09247 3.00108 3.24732 3.28066 3.34854 3.36802 3.72642 3.91096 4.24801 4.34006 4.48888 4.55132 4.65697 4.69179 4.79845 4.84950 4.96509 5.02717 5.10196 5.17354 5.21874 5.36756 5.40375 5.49696 5.51442 5.59662 5.65736 5.79798 5.85579 5.96543 6.03391 6.04378 6.18903 6.30353 6.34409 6.57369 6.63213 6.71084 6.77545 6.82070 6.96980 7.06242 7.30931 7.47929 7.58964 7.70317 8.00249 8.38061 8.71392 8.85963 9.34678 9.47670 10.91311 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.017664 B = 0.003133 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.739348 B = 8934.162733 C = 9117.255748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.078 3.922 3 Si 0.886 3.114 4 H -0.281 1.281 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.503 4.503 8 H 0.062 0.938 9 C 0.042 3.958 10 C 0.162 3.838 11 N -0.722 5.722 12 C 0.703 3.297 13 O -0.597 6.597 14 N -0.635 5.635 15 C 0.110 3.890 16 C -0.132 4.132 17 C -0.108 4.108 18 C -0.113 4.113 19 H 0.084 0.916 20 C 0.240 3.760 21 O -0.376 6.376 22 C 0.016 3.984 23 C 0.020 3.980 24 O -0.377 6.377 25 C 0.144 3.856 26 C -0.192 4.192 27 C -0.212 4.212 28 H 0.265 0.735 29 H 0.027 0.973 30 H 0.116 0.884 31 H 0.390 0.610 32 H 0.082 0.918 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.064 0.936 38 H 0.086 0.914 39 H 0.075 0.925 40 H 0.108 0.892 41 H 0.100 0.900 42 H 0.076 0.924 43 H 0.060 0.940 44 H 0.101 0.899 45 H 0.066 0.934 46 H 0.080 0.920 47 H 0.076 0.924 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.150 -4.657 20.847 21.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.127 4.127 3 Si 0.713 3.287 4 H -0.207 1.207 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.539 4.539 8 H 0.080 0.920 9 C 0.041 3.959 10 C 0.039 3.961 11 N -0.376 5.376 12 C 0.404 3.596 13 O -0.476 6.476 14 N -0.374 5.374 15 C -0.014 4.014 16 C -0.171 4.171 17 C -0.146 4.146 18 C -0.133 4.133 19 H 0.103 0.897 20 C 0.145 3.855 21 O -0.296 6.296 22 C -0.061 4.061 23 C -0.056 4.056 24 O -0.298 6.298 25 C 0.020 3.980 26 C -0.231 4.231 27 C -0.249 4.249 28 H 0.075 0.925 29 H 0.045 0.955 30 H 0.134 0.866 31 H 0.226 0.774 32 H 0.101 0.899 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.083 0.917 38 H 0.103 0.897 39 H 0.094 0.906 40 H 0.126 0.874 41 H 0.118 0.882 42 H 0.094 0.906 43 H 0.078 0.922 44 H 0.119 0.881 45 H 0.084 0.916 46 H 0.098 0.902 47 H 0.094 0.906 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.150 -4.467 20.716 21.301 hybrid contribution 0.928 0.691 0.048 1.158 sum 3.078 -3.776 20.764 21.328 Atomic orbital electron populations 1.69866 1.06225 1.27262 1.46323 1.24951 0.94562 0.99143 0.94045 0.86698 0.80287 0.83530 0.78203 1.20668 1.21012 1.19666 1.20407 0.98272 0.90337 1.44925 0.91970 1.19149 0.95265 0.88209 0.93273 1.21122 0.93097 1.02731 0.79124 1.45375 1.10489 1.75082 1.06614 1.15905 0.85250 0.78121 0.80296 1.90861 1.11730 1.59924 1.85046 1.47178 1.06451 1.74240 1.09545 1.21608 0.81040 0.99384 0.99340 1.21905 1.00756 0.99649 0.94749 1.21434 0.93487 1.01826 0.97803 1.22042 0.96437 1.01651 0.93195 0.89745 1.24073 0.80408 0.93132 0.87910 1.89231 1.37363 1.66232 1.36765 1.24392 0.84008 1.03741 0.93934 1.24187 0.97612 0.95531 0.88269 1.88952 1.19067 1.65309 1.56487 1.21247 0.99643 0.95398 0.81741 1.22928 0.97129 1.06717 0.96337 1.22881 0.95978 1.03105 1.02968 0.92464 0.95461 0.86597 0.77426 0.89945 0.91570 0.91445 0.90609 0.91059 0.91712 0.89678 0.90639 0.87436 0.88210 0.90566 0.92189 0.88084 0.91572 0.90156 0.90590 0.91440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.18 11.11 55.43 0.62 -23.56 16 2 C 0.08 2.09 5.07 -17.82 -0.09 2.00 16 3 Si 0.89 20.66 29.59 -169.99 -5.03 15.63 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.50 -13.21 8.98 -34.44 -0.31 -13.52 16 8 H 0.06 1.62 7.90 -52.49 -0.41 1.21 16 9 C 0.04 1.01 1.71 -155.66 -0.27 0.75 16 10 C 0.16 3.97 5.30 -4.04 -0.02 3.95 16 11 N -0.72 -15.45 5.45 -65.22 -0.36 -15.81 16 12 C 0.70 15.10 8.29 -86.92 -0.72 14.38 16 13 O -0.60 -15.13 15.77 5.29 0.08 -15.04 16 14 N -0.64 -10.62 2.97 -178.23 -0.53 -11.15 16 15 C 0.11 1.44 6.38 -3.71 -0.02 1.41 16 16 C -0.13 -1.40 6.08 -26.61 -0.16 -1.56 16 17 C -0.11 -1.11 5.05 -26.69 -0.13 -1.24 16 18 C -0.11 -1.38 2.37 -90.27 -0.21 -1.60 16 19 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 20 C 0.24 2.65 3.50 37.16 0.13 2.78 16 21 O -0.38 -3.90 10.69 -59.04 -0.63 -4.53 16 22 C 0.02 0.11 7.95 38.17 0.30 0.42 16 23 C 0.02 0.17 8.07 38.17 0.31 0.48 16 24 O -0.38 -4.58 10.68 -59.04 -0.63 -5.21 16 25 C 0.14 2.15 5.53 -3.49 -0.02 2.13 16 26 C -0.19 -4.34 9.88 -26.73 -0.26 -4.61 16 27 C -0.21 -4.41 9.95 -26.73 -0.27 -4.68 16 28 H 0.27 7.16 8.32 -40.82 -0.34 6.82 16 29 H 0.03 0.67 7.98 -51.93 -0.41 0.26 16 30 H 0.12 3.28 5.47 -51.93 -0.28 3.00 16 31 H 0.39 7.51 5.97 -40.82 -0.24 7.27 16 32 H 0.08 1.09 5.65 -51.93 -0.29 0.80 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.71 7.67 -51.93 -0.40 0.31 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.10 1.80 6.74 -51.93 -0.35 1.45 16 45 H 0.07 1.43 8.10 -51.93 -0.42 1.01 16 46 H 0.08 1.82 8.14 -51.93 -0.42 1.40 16 47 H 0.08 1.53 8.14 -51.94 -0.42 1.10 16 48 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 379.48 15.07 5.72 5.72 Total: -1.00 -32.01 379.48 -10.38 -42.39 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: -7.87 Total: 10.49 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: -1.75 Total: 1.08 kcal Atomic # 7 Polarization: -50.25 SS G_CDS: -0.27 Total: -50.52 kcal Atomic # 8 Polarization: -23.61 SS G_CDS: -1.18 Total: -24.79 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.03 Total: 15.63 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.01 -10.38 -42.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797561020.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.310 kcal (2) G-P(sol) polarization free energy of solvation -32.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds