Wall clock time and date at job start Tue Mar 31 2020 13:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 120.00480 * 2 1 4 4 H 1.48505 * 109.47282 * 275.76612 * 3 2 1 5 5 H 1.48506 * 109.46925 * 35.76028 * 3 2 1 6 6 H 1.48499 * 109.47392 * 155.76323 * 3 2 1 7 7 C 1.37879 * 119.99730 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00003 * 6.36754 * 7 2 1 9 9 C 1.50698 * 120.00048 * 186.37521 * 7 2 1 10 10 C 1.52999 * 115.54547 * 306.51098 * 9 7 2 11 11 N 1.46500 * 109.47584 * 279.97015 * 10 9 7 12 12 C 1.34774 * 120.00205 * 175.00776 * 11 10 9 13 13 O 1.21588 * 119.99999 * 5.03541 * 12 11 10 14 14 N 1.34776 * 119.99974 * 185.02496 * 12 11 10 15 15 C 1.46925 * 120.63340 * 353.58692 * 14 12 11 16 16 C 1.53184 * 108.77446 * 233.58483 * 15 14 12 17 17 C 1.53043 * 109.31570 * 305.35817 * 16 15 14 18 18 C 1.53047 * 109.52267 * 61.37474 * 17 16 15 19 19 C 1.46933 * 120.62721 * 173.56264 * 14 12 11 20 20 H 1.09008 * 109.58082 * 246.20459 * 19 14 12 21 21 C 1.52996 * 109.58688 * 6.48379 * 19 14 12 22 22 O 1.43763 * 109.62844 * 182.47478 * 21 19 14 23 23 C 1.44580 * 104.91520 * 215.71157 * 22 21 19 24 24 C 1.54913 * 101.64012 * 36.27272 * 23 22 21 25 25 O 1.43362 * 109.63189 * 63.26543 * 21 19 14 26 26 C 1.52995 * 117.52263 * 92.21789 * 9 7 2 27 27 C 1.52991 * 60.00243 * 107.48096 * 26 9 7 28 28 H 0.97002 * 119.99438 * 359.97438 * 1 2 3 29 29 H 1.09011 * 109.47113 * 159.96907 * 10 9 7 30 30 H 1.08994 * 109.47373 * 39.97291 * 10 9 7 31 31 H 0.96995 * 119.99925 * 355.00530 * 11 10 9 32 32 H 1.09004 * 109.58572 * 113.79571 * 15 14 12 33 33 H 1.09002 * 109.70102 * 353.43941 * 15 14 12 34 34 H 1.09009 * 109.49588 * 185.41366 * 16 15 14 35 35 H 1.08995 * 109.52983 * 65.33498 * 16 15 14 36 36 H 1.08991 * 109.46298 * 181.38381 * 17 16 15 37 37 H 1.09003 * 109.46032 * 301.36799 * 17 16 15 38 38 H 1.09002 * 109.49510 * 58.58015 * 18 17 16 39 39 H 1.08993 * 109.49720 * 178.67211 * 18 17 16 40 40 H 1.08994 * 109.63158 * 302.86989 * 21 19 14 41 41 H 1.09006 * 111.09196 * 278.15905 * 23 22 21 42 42 H 1.09003 * 110.97638 * 154.33714 * 23 22 21 43 43 H 1.09009 * 110.69410 * 205.95956 * 24 23 22 44 44 H 1.08991 * 110.69628 * 82.75164 * 24 23 22 45 45 H 1.08999 * 117.49668 * 214.97256 * 26 9 7 46 46 H 1.09002 * 117.49670 * 359.97438 * 26 9 7 47 47 H 1.09000 * 117.50113 * 252.51625 * 27 26 9 48 48 H 1.09006 * 117.50261 * 107.49057 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.3751 2.1167 -1.3930 5 1 1.5129 2.6144 0.8182 6 1 3.6024 1.4079 0.5747 7 6 2.0045 -1.1941 -0.0005 8 1 1.4695 -2.1264 -0.1047 9 6 3.5045 -1.1983 0.1444 10 6 4.2658 -0.3180 -0.8488 11 7 4.3826 -1.0168 -2.1311 12 6 4.9295 -0.3912 -3.1922 13 8 5.4089 0.7187 -3.0629 14 7 4.9453 -0.9959 -4.3965 15 6 4.4990 -2.3883 -4.5410 16 6 5.6047 -3.1910 -5.2336 17 6 5.9743 -2.5095 -6.5531 18 6 6.5041 -1.1017 -6.2708 19 6 5.4086 -0.2751 -5.5901 20 1 4.5752 -0.1349 -6.2787 21 6 5.9701 1.0879 -5.1804 22 8 6.3704 1.8175 -6.3527 23 6 7.5500 2.5502 -5.9502 24 6 8.2335 1.5413 -4.9938 25 8 7.1174 0.9035 -4.3407 26 6 4.0780 -1.3285 1.5568 27 6 4.1683 -2.5051 0.5831 28 1 -0.4849 0.8401 0.0004 29 1 5.2613 -0.1066 -0.4582 30 1 3.7259 0.6178 -0.9929 31 1 4.0663 -1.9298 -2.2164 32 1 3.5916 -2.4205 -5.1441 33 1 4.2996 -2.8142 -3.5577 34 1 5.2495 -4.2021 -5.4335 35 1 6.4820 -3.2347 -4.5884 36 1 6.7436 -3.0921 -7.0598 37 1 5.0908 -2.4443 -7.1882 38 1 7.3728 -1.1646 -5.6154 39 1 6.7893 -0.6254 -7.2087 40 1 5.2083 1.6507 -4.6411 41 1 7.2821 3.4666 -5.4241 42 1 8.1863 2.7671 -6.8082 43 1 8.8587 2.0615 -4.2679 44 1 8.8184 0.8133 -5.5558 45 1 4.9976 -0.7870 1.7785 46 1 3.3703 -1.4108 2.3817 47 1 3.5199 -3.3618 0.7672 48 1 5.1473 -2.7378 0.1641 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797565736.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:15 Heat of formation + Delta-G solvation = -78.345025 kcal Electronic energy + Delta-G solvation = -30151.207578 eV Core-core repulsion = 26207.697122 eV Total energy + Delta-G solvation = -3943.510456 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.11391 -40.71793 -39.10478 -38.14585 -35.88368 -35.23982 -34.32488 -33.67142 -32.76074 -30.30578 -28.88027 -27.37131 -26.32251 -25.33633 -24.06815 -23.24354 -22.88495 -22.04740 -21.19941 -20.42342 -19.25308 -18.36213 -18.22655 -17.50545 -17.29179 -17.22539 -16.62687 -16.43969 -15.73597 -15.64078 -15.33533 -15.21452 -15.11238 -14.94462 -14.57579 -14.50163 -14.33833 -14.12044 -13.87457 -13.80152 -13.40657 -13.24850 -13.05422 -12.56279 -12.52334 -12.21406 -12.14255 -12.01810 -11.95021 -11.69112 -11.60725 -11.53524 -11.31860 -11.01033 -10.85574 -10.73416 -10.45630 -10.26156 -9.82257 -9.41904 -8.36447 -6.36321 1.26610 1.33376 1.38958 1.56437 2.18853 2.26279 2.59246 2.86418 2.96768 3.16278 3.41313 3.72199 3.77033 3.80926 3.89078 4.00960 4.04725 4.09764 4.20605 4.23807 4.29138 4.33597 4.44494 4.49591 4.50132 4.58077 4.62592 4.65530 4.72975 4.74957 4.90870 4.93118 4.96624 5.02695 5.05414 5.07167 5.15311 5.20220 5.25911 5.45639 5.50724 5.58654 5.63343 5.66718 5.93863 6.26001 6.28769 6.67903 7.04573 7.29160 7.64706 8.78527 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.014283 B = 0.004579 C = 0.004068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.867317 B = 6113.430164 C = 6881.198672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.034 3.966 3 Si 0.934 3.066 4 H -0.299 1.299 5 H -0.300 1.300 6 H -0.238 1.238 7 C -0.471 4.471 8 H 0.048 0.952 9 C -0.043 4.043 10 C 0.182 3.818 11 N -0.723 5.723 12 C 0.692 3.308 13 O -0.601 6.601 14 N -0.621 5.621 15 C 0.104 3.896 16 C -0.126 4.126 17 C -0.113 4.113 18 C -0.114 4.114 19 C 0.148 3.852 20 H 0.087 0.913 21 C 0.250 3.750 22 O -0.399 6.399 23 C 0.020 3.980 24 C 0.002 3.998 25 O -0.365 6.365 26 C -0.185 4.185 27 C -0.152 4.152 28 H 0.265 0.735 29 H 0.052 0.948 30 H 0.027 0.973 31 H 0.404 0.596 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.101 0.899 35 H 0.058 0.942 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.058 0.942 39 H 0.084 0.916 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.138 0.862 43 H 0.101 0.899 44 H 0.084 0.916 45 H 0.092 0.908 46 H 0.083 0.917 47 H 0.088 0.912 48 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.649 -4.158 -15.008 23.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.165 4.165 3 Si 0.764 3.236 4 H -0.227 1.227 5 H -0.228 1.228 6 H -0.162 1.162 7 C -0.509 4.509 8 H 0.066 0.934 9 C -0.044 4.044 10 C 0.057 3.943 11 N -0.380 5.380 12 C 0.393 3.607 13 O -0.482 6.482 14 N -0.360 5.360 15 C -0.018 4.018 16 C -0.164 4.164 17 C -0.150 4.150 18 C -0.152 4.152 19 C 0.044 3.956 20 H 0.105 0.895 21 C 0.155 3.845 22 O -0.320 6.320 23 C -0.056 4.056 24 C -0.074 4.074 25 O -0.286 6.286 26 C -0.224 4.224 27 C -0.189 4.189 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.044 0.956 31 H 0.243 0.757 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.119 0.881 35 H 0.077 0.923 36 H 0.103 0.897 37 H 0.092 0.908 38 H 0.077 0.923 39 H 0.103 0.897 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.156 0.844 43 H 0.119 0.881 44 H 0.102 0.898 45 H 0.110 0.890 46 H 0.101 0.899 47 H 0.107 0.893 48 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 17.703 -3.368 -14.900 23.383 hybrid contribution -0.482 0.949 0.296 1.105 sum 17.221 -2.420 -14.604 22.709 Atomic orbital electron populations 1.69997 1.07691 1.27757 1.52269 1.25519 0.94991 1.01754 0.94246 0.86145 0.80031 0.80455 0.76988 1.22690 1.22788 1.16219 1.20442 0.89031 0.93008 1.48424 0.93363 1.19432 0.93000 0.98437 0.93509 1.20992 0.97236 0.93531 0.82506 1.45188 1.65044 1.18116 1.09667 1.16220 0.79118 0.84220 0.81107 1.90886 1.52792 1.20966 1.83602 1.47207 1.69116 1.14572 1.05150 1.21910 0.98332 0.79370 1.02149 1.21886 0.97975 0.99686 0.96889 1.21508 1.02031 0.94424 0.97073 1.21793 0.96824 0.96347 1.00285 1.21484 0.97710 0.90785 0.85670 0.89496 1.24020 0.90131 0.91972 0.78397 1.89087 1.46152 1.61811 1.34916 1.24460 0.85724 0.95054 1.00330 1.24416 0.90876 0.95525 0.96578 1.89259 1.17228 1.77609 1.44470 1.23123 1.01961 1.03288 0.93982 1.22782 1.01153 0.91493 1.03432 0.92575 0.92968 0.95552 0.75746 0.90196 0.90040 0.88098 0.92308 0.89692 0.90841 0.92338 0.89724 0.91804 0.91351 0.84415 0.88085 0.89779 0.88998 0.89854 0.89302 0.88054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.96 13.96 21.45 0.30 -57.66 16 2 C 0.03 1.94 5.47 84.65 0.46 2.40 16 3 Si 0.93 47.94 24.70 68.60 1.69 49.64 16 4 H -0.30 -16.16 7.11 99.48 0.71 -15.46 16 5 H -0.30 -15.24 7.11 99.48 0.71 -14.53 16 6 H -0.24 -11.35 5.92 99.48 0.59 -10.76 16 7 C -0.47 -25.60 9.52 25.60 0.24 -25.36 16 8 H 0.05 2.85 8.06 -2.91 -0.02 2.83 16 9 C -0.04 -1.87 0.97 -52.93 -0.05 -1.92 16 10 C 0.18 7.99 4.31 86.38 0.37 8.36 16 11 N -0.72 -28.18 5.43 -478.53 -2.60 -30.78 16 12 C 0.69 27.13 8.00 179.06 1.43 28.56 16 13 O -0.60 -27.32 10.60 19.98 0.21 -27.11 16 14 N -0.62 -18.95 2.97 -812.89 -2.41 -21.36 16 15 C 0.10 2.36 6.37 86.36 0.55 2.91 16 16 C -0.13 -2.09 6.08 30.67 0.19 -1.90 16 17 C -0.11 -1.73 5.89 30.62 0.18 -1.55 16 18 C -0.11 -2.36 5.09 30.67 0.16 -2.20 16 19 C 0.15 4.10 3.01 44.97 0.14 4.23 16 20 H 0.09 2.30 8.14 -2.38 -0.02 2.28 16 21 C 0.25 8.13 2.75 71.98 0.20 8.32 16 22 O -0.40 -10.97 10.92 -126.20 -1.38 -12.35 16 23 C 0.02 0.41 7.95 72.64 0.58 0.99 16 24 C 0.00 0.05 8.07 72.64 0.59 0.64 16 25 O -0.36 -12.18 7.68 -117.70 -0.90 -13.08 16 26 C -0.19 -7.18 9.88 30.59 0.30 -6.88 16 27 C -0.15 -5.37 9.85 30.59 0.30 -5.07 16 28 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 29 H 0.05 2.22 7.95 -2.38 -0.02 2.20 16 30 H 0.03 1.33 2.86 -2.39 -0.01 1.33 16 31 H 0.40 13.97 5.92 -92.71 -0.55 13.42 16 32 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.08 1.86 5.68 -2.39 -0.01 1.84 16 34 H 0.10 1.19 8.14 -2.38 -0.02 1.17 16 35 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.06 1.38 7.44 -2.39 -0.02 1.36 16 39 H 0.08 1.57 7.95 -2.39 -0.02 1.55 16 40 H 0.06 2.65 6.26 -2.39 -0.01 2.64 16 41 H 0.07 1.44 8.14 -2.38 -0.02 1.43 16 42 H 0.14 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.10 2.00 8.14 -2.38 -0.02 1.98 16 44 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 45 H 0.09 3.20 8.08 -2.39 -0.02 3.18 16 46 H 0.08 3.34 8.14 -2.39 -0.02 3.32 16 47 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 48 H 0.10 3.07 8.14 -2.38 -0.02 3.05 16 Total: -1.00 -73.30 363.99 0.84 -72.46 By element: Atomic # 1 Polarization: 28.40 SS G_CDS: 0.30 Total: 28.70 kcal Atomic # 6 Polarization: 5.90 SS G_CDS: 5.63 Total: 11.53 kcal Atomic # 7 Polarization: -105.08 SS G_CDS: -4.71 Total: -109.80 kcal Atomic # 8 Polarization: -50.47 SS G_CDS: -2.07 Total: -52.54 kcal Atomic # 14 Polarization: 47.94 SS G_CDS: 1.69 Total: 49.64 kcal Total: -73.30 0.84 -72.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797565736.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.885 kcal (2) G-P(sol) polarization free energy of solvation -73.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds