Wall clock time and date at job start Tue Mar 31 2020 15:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.47072 * 2 1 4 4 C 1.52992 * 109.47140 * 172.64829 * 3 2 1 5 5 C 1.53002 * 109.47066 * 185.00106 * 4 3 2 6 6 C 1.53000 * 109.46942 * 292.64845 * 3 2 1 7 7 N 1.46901 * 109.47604 * 66.98453 * 6 3 2 8 8 C 1.46896 * 111.00160 * 86.79426 * 7 6 3 9 9 C 1.50703 * 109.47009 * 285.32559 * 8 7 6 10 10 H 1.07997 * 120.00313 * 358.61843 * 9 8 7 11 11 C 1.37885 * 119.99843 * 178.62422 * 9 8 7 12 12 N 1.31508 * 120.00007 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99714 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47217 * 59.99988 * 13 11 9 15 15 H 1.48500 * 109.46792 * 180.02562 * 13 11 9 16 16 H 1.48508 * 109.47155 * 299.99886 * 13 11 9 17 17 C 1.46903 * 111.00060 * 210.75098 * 7 6 3 18 18 C 1.50699 * 109.47125 * 66.04589 * 17 7 6 19 19 C 1.38718 * 120.77699 * 269.72281 * 18 17 7 20 20 C 1.38148 * 119.18981 * 179.73677 * 19 18 17 21 21 C 1.50693 * 119.60788 * 180.24947 * 20 19 18 22 22 N 1.31907 * 120.78057 * 0.54391 * 20 19 18 23 23 C 1.31949 * 121.70715 * 359.72616 * 22 20 19 24 24 Cl 1.73602 * 119.63006 * 179.97438 * 23 22 20 25 25 C 1.38393 * 120.73143 * 0.02562 * 23 22 20 26 26 H 1.08995 * 109.47089 * 58.68576 * 1 2 3 27 27 H 1.09000 * 109.46612 * 178.68800 * 1 2 3 28 28 H 1.09001 * 109.46789 * 298.68384 * 1 2 3 29 29 H 1.08994 * 109.46699 * 240.00035 * 2 1 3 30 30 H 1.08995 * 109.47270 * 120.00223 * 2 1 3 31 31 H 1.09001 * 109.46993 * 52.64495 * 3 2 1 32 32 H 1.08997 * 109.46815 * 304.99520 * 4 3 2 33 33 H 1.08999 * 109.47425 * 65.00056 * 4 3 2 34 34 H 1.08999 * 109.47516 * 179.97438 * 5 4 3 35 35 H 1.09003 * 109.47052 * 299.99816 * 5 4 3 36 36 H 1.08998 * 109.47511 * 59.99954 * 5 4 3 37 37 H 1.09002 * 109.47416 * 306.98266 * 6 3 2 38 38 H 1.09003 * 109.47298 * 186.98725 * 6 3 2 39 39 H 1.08995 * 109.47128 * 45.31933 * 8 7 6 40 40 H 1.08995 * 109.47475 * 165.32359 * 8 7 6 41 41 H 0.97000 * 119.99671 * 179.97438 * 12 11 9 42 42 H 1.08995 * 109.46893 * 306.03987 * 17 7 6 43 43 H 1.09004 * 109.46656 * 186.04454 * 17 7 6 44 44 H 1.07997 * 120.40478 * 359.96825 * 19 18 17 45 45 H 1.08997 * 109.47219 * 270.29619 * 21 20 19 46 46 H 1.09004 * 109.47081 * 30.29424 * 21 20 19 47 47 H 1.08999 * 109.47222 * 150.29595 * 21 20 19 48 48 H 1.07998 * 120.42282 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5588 1.4465 0.1846 5 6 4.0536 2.8889 0.3095 6 6 1.6863 2.1085 -1.3313 7 7 0.2283 2.2556 -1.4331 8 6 -0.2196 3.5066 -0.8070 9 6 -0.1669 3.3648 0.6925 10 1 0.1448 2.4308 1.1359 11 6 -0.5166 4.4277 1.4982 12 7 -0.8957 5.5653 0.9582 13 14 -0.4519 4.2517 3.3567 14 1 0.9351 3.9256 3.7751 15 1 -0.8734 5.5272 3.9897 16 1 -1.3666 3.1622 3.7829 17 6 -0.2120 2.1803 -2.8326 18 6 0.0468 0.7951 -3.3668 19 6 1.2504 0.4852 -3.9828 20 6 1.4549 -0.7966 -4.4557 21 6 2.7611 -1.1450 -5.1214 22 7 0.5181 -1.7175 -4.3365 23 6 -0.6407 -1.4576 -3.7614 24 17 -1.8358 -2.7104 -3.6340 25 6 -0.9143 -0.1972 -3.2597 26 1 -0.3633 0.5341 -0.8779 27 1 -0.3632 -1.0274 -0.0235 28 1 -0.3633 0.4933 0.9016 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.5733 1.9929 0.8169 32 1 3.8163 0.8945 1.0885 33 1 4.0308 0.9738 -0.6768 34 1 5.1356 2.8918 0.4415 35 1 3.7960 3.4409 -0.5944 36 1 3.5817 3.3616 1.1709 37 1 2.0475 1.4910 -2.1537 38 1 2.1551 3.0912 -1.3818 39 1 0.4329 4.3225 -1.1179 40 1 -1.2426 3.7217 -1.1158 41 1 -1.1421 6.3129 1.5250 42 1 0.3405 2.9080 -3.4269 43 1 -1.2784 2.3986 -2.8902 44 1 2.0197 1.2359 -4.0881 45 1 2.6868 -0.9507 -6.1913 46 1 3.5593 -0.5366 -4.6962 47 1 2.9821 -2.1998 -4.9582 48 1 -1.8646 0.0102 -2.7903 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797590467.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:47 Heat of formation + Delta-G solvation = 19.367511 kcal Electronic energy + Delta-G solvation = -27014.311217 eV Core-core repulsion = 23515.747059 eV Total energy + Delta-G solvation = -3498.564158 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.166 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.47962 -38.14373 -36.61721 -35.13626 -33.33660 -32.55990 -31.89950 -31.37567 -27.93300 -27.57099 -27.32018 -25.26949 -23.76077 -23.07717 -21.43239 -21.23839 -20.29710 -19.32439 -16.94772 -16.55836 -16.12946 -15.69434 -15.53323 -14.81365 -14.73140 -14.30736 -14.02542 -13.59130 -13.37360 -13.26042 -12.99915 -12.95087 -12.49696 -12.41160 -12.13345 -11.99155 -11.92944 -11.74851 -11.48325 -11.34187 -11.22349 -11.18618 -10.96894 -10.86420 -10.72273 -10.54815 -10.47895 -10.21492 -9.95436 -9.76910 -9.65366 -9.47664 -9.35749 -8.87669 -8.70140 -8.41486 -7.17884 -6.06144 -4.05929 0.98482 1.21547 1.85162 3.30422 3.35261 3.38092 3.61796 4.31097 4.38421 4.60066 4.88307 4.95026 5.09627 5.15271 5.29617 5.37411 5.40023 5.43026 5.46035 5.49708 5.65670 5.70579 5.79724 5.87468 5.97305 5.98724 6.03384 6.07685 6.13926 6.22249 6.31828 6.34605 6.43163 6.50742 6.56787 6.64436 6.69365 6.73486 6.91316 6.99042 7.13254 7.19248 7.27094 7.63252 7.76821 7.85511 7.99838 8.09050 8.44326 9.01534 9.57592 11.04385 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.013556 B = 0.004299 C = 0.003860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.036246 B = 6512.295208 C = 7252.420314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.097 4.097 3 C -0.100 4.100 4 C -0.115 4.115 5 C -0.150 4.150 6 C 0.066 3.934 7 N -0.518 5.518 8 C 0.193 3.807 9 C -0.504 4.504 10 H 0.079 0.921 11 C 0.057 3.943 12 N -0.899 5.899 13 Si 0.889 3.111 14 H -0.277 1.277 15 H -0.289 1.289 16 H -0.276 1.276 17 C 0.082 3.918 18 C 0.000 4.000 19 C -0.165 4.165 20 C 0.141 3.859 21 C -0.102 4.102 22 N -0.487 5.487 23 C 0.180 3.820 24 Cl -0.041 7.041 25 C -0.139 4.139 26 H 0.111 0.889 27 H 0.016 0.984 28 H 0.052 0.948 29 H 0.036 0.964 30 H 0.038 0.962 31 H 0.113 0.887 32 H 0.053 0.947 33 H 0.047 0.953 34 H 0.041 0.959 35 H 0.054 0.946 36 H 0.059 0.941 37 H 0.051 0.949 38 H 0.038 0.962 39 H -0.004 1.004 40 H 0.027 0.973 41 H 0.261 0.739 42 H 0.041 0.959 43 H 0.087 0.913 44 H 0.137 0.863 45 H 0.077 0.923 46 H 0.077 0.923 47 H 0.077 0.923 48 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.507 -10.186 -10.063 15.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.134 4.134 3 C -0.118 4.118 4 C -0.153 4.153 5 C -0.208 4.208 6 C -0.062 4.062 7 N -0.242 5.242 8 C 0.069 3.931 9 C -0.543 4.543 10 H 0.097 0.903 11 C -0.144 4.144 12 N -0.538 5.538 13 Si 0.717 3.283 14 H -0.202 1.202 15 H -0.215 1.215 16 H -0.202 1.202 17 C -0.046 4.046 18 C -0.008 4.008 19 C -0.185 4.185 20 C 0.004 3.996 21 C -0.159 4.159 22 N -0.200 5.200 23 C 0.016 3.984 24 Cl -0.013 7.013 25 C -0.160 4.160 26 H 0.129 0.871 27 H 0.035 0.965 28 H 0.071 0.929 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.131 0.869 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.060 0.940 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.056 0.944 39 H 0.014 0.986 40 H 0.045 0.955 41 H 0.070 0.930 42 H 0.059 0.941 43 H 0.105 0.895 44 H 0.155 0.845 45 H 0.096 0.904 46 H 0.095 0.905 47 H 0.096 0.904 48 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 5.266 -11.300 -10.068 16.024 hybrid contribution 0.093 1.317 1.053 1.689 sum 5.359 -9.983 -9.015 14.479 Atomic orbital electron populations 1.22292 0.94924 0.98732 1.06264 1.21310 0.97446 0.95786 0.98874 1.21604 0.93415 0.96489 1.00306 1.21529 0.96753 0.96609 1.00428 1.21790 0.99280 0.97110 1.02571 1.22199 0.88240 0.98747 0.96974 1.62373 1.11740 1.39972 1.10097 1.19858 0.95331 0.83180 0.94765 1.21334 1.44078 0.98561 0.90286 0.90315 1.24959 0.95582 0.95325 0.98548 1.69936 1.45747 1.02824 1.35311 0.86697 0.78578 0.77281 0.85751 1.20219 1.21466 1.20152 1.21150 1.01914 0.89834 0.91718 1.20365 0.92062 0.96445 0.91946 1.21952 0.98221 0.97665 1.00689 1.21015 0.94481 0.88846 0.95262 1.20708 0.91663 1.03330 1.00204 1.66728 1.00670 1.36308 1.16304 1.21490 0.90359 0.88635 0.97930 1.98390 1.52861 1.53661 1.96360 1.21696 1.01966 0.91239 1.01095 0.87090 0.96518 0.92899 0.94522 0.94357 0.86914 0.92780 0.93394 0.94027 0.92653 0.92234 0.93049 0.94403 0.98614 0.95489 0.92963 0.94057 0.89511 0.84482 0.90390 0.90456 0.90428 0.83671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.99 9.06 37.16 0.34 -2.65 16 2 C -0.10 -1.63 5.38 -26.73 -0.14 -1.77 16 3 C -0.10 -1.74 1.87 -90.62 -0.17 -1.90 16 4 C -0.12 -1.73 5.40 -26.73 -0.14 -1.88 16 5 C -0.15 -2.27 9.68 37.16 0.36 -1.91 16 6 C 0.07 1.13 4.11 -3.82 -0.02 1.12 16 7 N -0.52 -9.49 1.30 -237.52 -0.31 -9.79 16 8 C 0.19 4.45 4.73 -4.98 -0.02 4.43 16 9 C -0.50 -12.69 8.03 -34.44 -0.28 -12.97 16 10 H 0.08 1.95 3.68 -52.49 -0.19 1.76 16 11 C 0.06 1.52 5.46 -17.82 -0.10 1.42 16 12 N -0.90 -25.24 13.29 55.43 0.74 -24.50 16 13 Si 0.89 20.77 29.54 -169.99 -5.02 15.75 16 14 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 15 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 16 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 17 C 0.08 1.26 5.02 -4.97 -0.02 1.23 16 18 C 0.00 0.01 4.38 -104.33 -0.46 -0.45 16 19 C -0.16 -2.08 7.72 -39.44 -0.30 -2.38 16 20 C 0.14 1.78 6.78 -82.60 -0.56 1.22 16 21 C -0.10 -0.93 10.17 36.00 0.37 -0.56 16 22 N -0.49 -7.02 10.25 -6.62 -0.07 -7.09 16 23 C 0.18 2.57 7.27 -17.44 -0.13 2.44 16 24 Cl -0.04 -0.54 29.11 -51.86 -1.51 -2.05 16 25 C -0.14 -1.94 8.51 -39.41 -0.34 -2.28 16 26 H 0.11 2.02 3.03 -51.93 -0.16 1.86 16 27 H 0.02 0.28 8.14 -51.93 -0.42 -0.15 16 28 H 0.05 1.06 6.89 -51.93 -0.36 0.70 16 29 H 0.04 0.60 8.11 -51.93 -0.42 0.18 16 30 H 0.04 0.62 8.13 -51.93 -0.42 0.20 16 31 H 0.11 2.35 4.49 -51.93 -0.23 2.12 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.05 0.85 6.42 -51.93 -0.33 0.51 16 36 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.05 0.78 4.67 -51.93 -0.24 0.54 16 38 H 0.04 0.70 5.66 -51.93 -0.29 0.40 16 39 H 0.00 -0.10 7.66 -51.93 -0.40 -0.50 16 40 H 0.03 0.67 7.75 -51.93 -0.40 0.27 16 41 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 42 H 0.04 0.61 8.08 -51.93 -0.42 0.19 16 43 H 0.09 1.33 7.80 -51.93 -0.40 0.92 16 44 H 0.14 1.50 7.40 -52.49 -0.39 1.12 16 45 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 46 H 0.08 0.59 8.08 -51.93 -0.42 0.17 16 47 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.15 1.94 8.06 -52.49 -0.42 1.52 16 LS Contribution 379.58 15.07 5.72 5.72 Total: -1.00 -27.28 379.58 -9.67 -36.95 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -7.60 Total: 1.92 kcal Atomic # 6 Polarization: -15.28 SS G_CDS: -1.62 Total: -16.90 kcal Atomic # 7 Polarization: -41.75 SS G_CDS: 0.36 Total: -41.39 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -1.51 Total: -2.05 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -27.28 -9.67 -36.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797590467.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.315 kcal (2) G-P(sol) polarization free energy of solvation -27.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds