Wall clock time and date at job start Tue Mar 31 2020 14:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34512 * 125.79226 * 2 1 4 4 C 1.41379 * 106.84086 * 179.97438 * 3 2 1 5 5 C 1.34512 * 106.84332 * 0.02562 * 4 3 2 6 6 C 1.50696 * 125.79090 * 180.02562 * 5 4 3 7 7 H 1.09003 * 109.47393 * 340.02245 * 6 5 4 8 8 O 1.42900 * 109.47234 * 220.02126 * 6 5 4 9 9 C 1.53004 * 109.47466 * 100.02284 * 6 5 4 10 10 N 1.46497 * 109.47164 * 185.00303 * 9 6 5 11 11 C 1.34773 * 120.00097 * 180.02562 * 10 9 6 12 12 O 1.21592 * 119.99778 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00233 * 179.97438 * 11 10 9 14 14 C 1.46506 * 120.00150 * 179.97438 * 13 11 10 15 15 C 1.52995 * 109.47271 * 180.02562 * 14 13 11 16 16 C 1.52996 * 109.47390 * 300.00374 * 15 14 13 17 17 C 1.53003 * 109.47163 * 60.00277 * 15 14 13 18 18 C 1.53001 * 109.47281 * 180.02562 * 15 14 13 19 19 C 1.50694 * 109.47245 * 180.02562 * 18 15 14 20 20 H 1.08001 * 120.00317 * 0.02562 * 19 18 15 21 21 C 1.37876 * 120.00088 * 179.97438 * 19 18 15 22 22 N 1.31518 * 120.00404 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 120.00009 * 0.02562 * 21 19 18 24 24 H 1.48506 * 109.47383 * 89.99619 * 23 21 19 25 25 H 1.48499 * 109.47112 * 209.99878 * 23 21 19 26 26 H 1.48505 * 109.47244 * 330.00101 * 23 21 19 27 27 O 1.34301 * 108.41872 * 359.97438 * 5 4 3 28 28 H 1.09004 * 109.47797 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47078 * 299.99936 * 1 2 3 30 30 H 1.09005 * 109.47246 * 59.99506 * 1 2 3 31 31 H 1.07997 * 126.57601 * 0.02562 * 3 2 1 32 32 H 1.08007 * 126.57604 * 180.02562 * 4 3 2 33 33 H 0.96694 * 114.00041 * 300.00344 * 8 6 5 34 34 H 1.09000 * 109.46531 * 304.99901 * 9 6 5 35 35 H 1.08999 * 109.46986 * 64.99937 * 9 6 5 36 36 H 0.96998 * 120.00085 * 359.97438 * 10 9 6 37 37 H 0.97002 * 120.00065 * 0.02562 * 13 11 10 38 38 H 1.08996 * 109.46945 * 300.00418 * 14 13 11 39 39 H 1.09005 * 109.46540 * 59.99943 * 14 13 11 40 40 H 1.08999 * 109.47447 * 59.99878 * 16 15 14 41 41 H 1.08993 * 109.47625 * 180.02562 * 16 15 14 42 42 H 1.09005 * 109.47121 * 299.99911 * 16 15 14 43 43 H 1.08996 * 109.47129 * 59.99602 * 17 15 14 44 44 H 1.08996 * 109.47443 * 179.97438 * 17 15 14 45 45 H 1.09005 * 109.46868 * 300.00131 * 17 15 14 46 46 H 1.09003 * 109.47275 * 300.00517 * 18 15 14 47 47 H 1.08995 * 109.46721 * 59.99803 * 18 15 14 48 48 H 0.96999 * 120.00287 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0911 0.0000 4 6 3.6308 0.6319 0.0006 5 6 3.5813 -0.7123 0.0004 6 6 4.7705 -1.6380 0.0014 7 1 5.6508 -1.0990 -0.3488 8 8 4.5134 -2.7446 -0.8654 9 6 5.0174 -2.1496 1.4220 10 7 6.2421 -2.9531 1.4457 11 6 6.6601 -3.5108 2.5993 12 8 6.0208 -3.3466 3.6205 13 7 7.7865 -4.2504 2.6210 14 6 8.2411 -4.8561 3.8751 15 6 9.5334 -5.6362 3.6257 16 6 9.2747 -6.7350 2.5929 17 6 10.6099 -4.6848 3.0993 18 6 10.0078 -6.2693 4.9353 19 6 11.2810 -7.0371 4.6898 20 1 11.7093 -7.0699 3.6989 21 6 11.8997 -7.6969 5.7303 22 7 13.0107 -8.3674 5.5160 23 14 11.1594 -7.6397 7.4444 24 1 10.2158 -8.7738 7.6143 25 1 12.2426 -7.7413 8.4551 26 1 10.4310 -6.3584 7.6265 27 8 2.2924 -1.0894 0.0002 28 1 -0.3635 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.9665 2.1203 0.0004 32 1 4.5212 1.2433 0.0012 33 1 3.7421 -3.2706 -0.6136 34 1 5.1254 -1.3026 2.0995 35 1 4.1741 -2.7632 1.7389 36 1 6.7519 -3.0843 0.6310 37 1 8.2967 -4.3810 1.8064 38 1 8.4258 -4.0733 4.6106 39 1 7.4739 -5.5335 4.2503 40 1 8.9366 -6.2843 1.6598 41 1 10.1952 -7.2910 2.4156 42 1 8.5078 -7.4128 2.9679 43 1 10.7942 -3.9020 3.8350 44 1 11.5307 -5.2404 2.9221 45 1 10.2717 -4.2341 2.1662 46 1 10.1920 -5.4868 5.6714 47 1 9.2408 -6.9471 5.3098 48 1 13.4458 -8.8319 6.2480 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000807591537.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:21 Heat of formation + Delta-G solvation = -81.858342 kcal Electronic energy + Delta-G solvation = -27018.969887 eV Core-core repulsion = 23075.307082 eV Total energy + Delta-G solvation = -3943.662805 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.06770 -40.02460 -38.14145 -37.19016 -34.42267 -33.64747 -33.57649 -32.65193 -32.04702 -29.79957 -27.82024 -26.79694 -26.53903 -25.56369 -23.23152 -22.34332 -22.26114 -20.89102 -20.52102 -18.87371 -18.22423 -17.75075 -16.90265 -16.64358 -16.32659 -16.04878 -15.70278 -15.17591 -14.90841 -14.43353 -14.14205 -13.98729 -13.79211 -13.64507 -13.55642 -13.43169 -13.35844 -13.25481 -12.82245 -12.69566 -12.36958 -12.26576 -12.18107 -12.04186 -11.23029 -11.10495 -10.99945 -10.90028 -10.60231 -10.46616 -10.30211 -10.16417 -9.95372 -9.73628 -9.50608 -9.29855 -8.98164 -8.75475 -8.63847 -8.52335 -6.03194 -4.00391 1.19844 2.13186 2.30247 2.80825 3.31933 3.32760 3.40688 3.45117 3.82992 4.00325 4.24657 4.37448 4.46839 4.49423 4.58342 4.64513 4.90069 4.96350 5.19557 5.29325 5.29798 5.34857 5.38651 5.44551 5.56134 5.57640 5.65876 5.66536 6.08051 6.13881 6.14378 6.17882 6.30730 6.34881 6.52246 6.61401 6.67241 6.74074 6.89587 6.99056 7.02394 7.03303 7.07452 7.22137 7.38511 7.79298 8.10702 8.53768 8.70312 9.00844 9.59549 11.09468 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.032619 B = 0.001901 C = 0.001859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.199353 B =14727.698872 C =15055.066371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.007 4.007 3 C -0.214 4.214 4 C -0.188 4.188 5 C -0.050 4.050 6 C 0.187 3.813 7 H 0.134 0.866 8 O -0.547 6.547 9 C 0.112 3.888 10 N -0.747 5.747 11 C 0.701 3.299 12 O -0.595 6.595 13 N -0.735 5.735 14 C 0.145 3.855 15 C -0.063 4.063 16 C -0.128 4.128 17 C -0.128 4.128 18 C -0.002 4.002 19 C -0.510 4.510 20 H 0.078 0.922 21 C 0.066 3.934 22 N -0.904 5.904 23 Si 0.875 3.125 24 H -0.278 1.278 25 H -0.289 1.289 26 H -0.265 1.265 27 O -0.170 6.170 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.150 0.850 32 H 0.151 0.849 33 H 0.386 0.614 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.399 0.601 37 H 0.396 0.604 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.031 0.969 41 H 0.072 0.928 42 H 0.047 0.953 43 H 0.047 0.953 44 H 0.072 0.928 45 H 0.031 0.969 46 H 0.018 0.982 47 H 0.014 0.986 48 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.065 17.899 -14.927 32.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.057 4.057 3 C -0.233 4.233 4 C -0.207 4.207 5 C -0.101 4.101 6 C 0.127 3.873 7 H 0.151 0.849 8 O -0.353 6.353 9 C -0.013 4.013 10 N -0.404 5.404 11 C 0.401 3.599 12 O -0.474 6.474 13 N -0.390 5.390 14 C 0.021 3.979 15 C -0.064 4.064 16 C -0.185 4.185 17 C -0.185 4.185 18 C -0.040 4.040 19 C -0.548 4.548 20 H 0.096 0.904 21 C -0.135 4.135 22 N -0.543 5.543 23 Si 0.702 3.298 24 H -0.204 1.204 25 H -0.215 1.215 26 H -0.190 1.190 27 O -0.067 6.067 28 H 0.096 0.904 29 H 0.105 0.895 30 H 0.104 0.896 31 H 0.167 0.833 32 H 0.169 0.831 33 H 0.234 0.766 34 H 0.098 0.902 35 H 0.091 0.909 36 H 0.234 0.766 37 H 0.231 0.769 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.050 0.950 41 H 0.091 0.909 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.091 0.909 45 H 0.050 0.950 46 H 0.037 0.963 47 H 0.032 0.968 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -22.091 17.853 -14.160 31.737 hybrid contribution -0.237 -0.056 0.590 0.638 sum -22.327 17.797 -13.570 31.613 Atomic orbital electron populations 1.20345 0.84901 1.04239 1.03721 1.22532 0.94092 0.84041 1.05010 1.21579 0.92556 0.99614 1.09562 1.21620 0.98585 0.93580 1.06910 1.22930 0.83519 0.95201 1.08462 1.20668 0.91559 0.84982 0.90087 0.84901 1.86592 1.52916 1.41996 1.53814 1.21807 0.87686 0.96018 0.95820 1.44893 1.28243 1.56619 1.10672 1.15956 0.81530 0.78962 0.83438 1.90923 1.57903 1.66067 1.32490 1.45308 1.25726 1.54443 1.13525 1.21507 0.96245 0.96241 0.83913 1.20702 0.92126 0.94779 0.98771 1.21768 1.02421 0.98089 0.96260 1.21763 0.99719 0.98581 0.98435 1.19589 0.96993 0.95736 0.91662 1.21080 1.06410 1.30085 0.97259 0.90400 1.25002 0.94722 0.94970 0.98787 1.69903 1.18363 1.33696 1.32347 0.86857 0.78976 0.79106 0.84817 1.20384 1.21532 1.18965 1.83916 1.15966 1.35273 1.71527 0.90434 0.89461 0.89555 0.83253 0.83095 0.76587 0.90249 0.90926 0.76641 0.76911 0.92017 0.92023 0.95013 0.90925 0.93421 0.93417 0.90921 0.95031 0.96338 0.96779 0.92817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.32 10.42 36.00 0.38 0.05 16 2 C -0.01 -0.05 7.32 -35.63 -0.26 -0.31 16 3 C -0.21 -1.65 10.81 -39.70 -0.43 -2.08 16 4 C -0.19 -1.52 10.80 -39.70 -0.43 -1.94 16 5 C -0.05 -0.43 6.18 -35.63 -0.22 -0.65 16 6 C 0.19 1.37 3.47 -27.88 -0.10 1.27 16 7 H 0.13 0.78 8.13 -51.93 -0.42 0.35 16 8 O -0.55 -4.29 13.27 -37.33 -0.50 -4.79 16 9 C 0.11 1.05 5.29 -4.04 -0.02 1.03 16 10 N -0.75 -7.77 5.51 -65.23 -0.36 -8.13 16 11 C 0.70 10.38 8.57 -86.92 -0.74 9.64 16 12 O -0.60 -11.39 16.34 5.28 0.09 -11.30 16 13 N -0.73 -10.32 4.96 -65.22 -0.32 -10.65 16 14 C 0.14 2.46 4.56 -4.04 -0.02 2.44 16 15 C -0.06 -1.16 0.54 -154.51 -0.08 -1.24 16 16 C -0.13 -2.21 8.05 37.16 0.30 -1.91 16 17 C -0.13 -2.20 8.05 37.16 0.30 -1.90 16 18 C 0.00 -0.04 3.11 -27.89 -0.09 -0.13 16 19 C -0.51 -13.66 8.20 -34.44 -0.28 -13.94 16 20 H 0.08 2.20 5.92 -52.49 -0.31 1.89 16 21 C 0.07 1.87 5.47 -17.82 -0.10 1.78 16 22 N -0.90 -27.23 13.96 55.43 0.77 -26.46 16 23 Si 0.87 21.59 27.47 -169.99 -4.67 16.92 16 24 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 26 H -0.27 -6.34 6.54 56.52 0.37 -5.97 16 27 O -0.17 -1.57 10.58 3.62 0.04 -1.53 16 28 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.15 0.84 8.06 -52.49 -0.42 0.41 16 32 H 0.15 0.92 8.06 -52.48 -0.42 0.50 16 33 H 0.39 2.26 8.97 45.56 0.41 2.67 16 34 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.40 3.21 8.49 -40.82 -0.35 2.87 16 37 H 0.40 4.65 6.18 -40.82 -0.25 4.40 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.03 0.44 6.86 -51.93 -0.36 0.09 16 41 H 0.07 1.41 6.62 -51.93 -0.34 1.07 16 42 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 44 H 0.07 1.41 6.62 -51.93 -0.34 1.06 16 45 H 0.03 0.44 6.86 -51.93 -0.36 0.08 16 46 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 47 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 48 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 390.80 15.07 5.89 5.89 Total: -1.00 -34.32 390.80 -7.76 -42.08 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -6.91 Total: 5.89 kcal Atomic # 6 Polarization: -6.11 SS G_CDS: -1.80 Total: -7.91 kcal Atomic # 7 Polarization: -45.33 SS G_CDS: 0.09 Total: -45.24 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: -0.37 Total: -17.62 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.92 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.32 -7.76 -42.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807591537.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.779 kcal (2) G-P(sol) polarization free energy of solvation -34.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds