Wall clock time and date at job start Tue Mar 31 2020 14:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34512 * 125.79226 * 2 1 4 4 C 1.41379 * 106.84086 * 179.97438 * 3 2 1 5 5 C 1.34512 * 106.84332 * 0.02562 * 4 3 2 6 6 C 1.50696 * 125.79090 * 180.02562 * 5 4 3 7 7 H 1.09003 * 109.47393 * 340.02245 * 6 5 4 8 8 O 1.42900 * 109.47234 * 220.02126 * 6 5 4 9 9 C 1.53004 * 109.47466 * 100.02284 * 6 5 4 10 10 N 1.46497 * 109.47164 * 185.00303 * 9 6 5 11 11 C 1.34773 * 120.00097 * 180.02562 * 10 9 6 12 12 O 1.21592 * 119.99778 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00233 * 179.97438 * 11 10 9 14 14 C 1.46506 * 120.00150 * 179.97438 * 13 11 10 15 15 C 1.52995 * 109.47271 * 180.02562 * 14 13 11 16 16 C 1.52996 * 109.47390 * 300.00374 * 15 14 13 17 17 C 1.53003 * 109.47163 * 60.00277 * 15 14 13 18 18 C 1.53001 * 109.47281 * 180.02562 * 15 14 13 19 19 C 1.50694 * 109.47245 * 180.02562 * 18 15 14 20 20 H 1.08001 * 120.00317 * 0.02562 * 19 18 15 21 21 C 1.37876 * 120.00088 * 179.97438 * 19 18 15 22 22 N 1.31518 * 120.00404 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 120.00009 * 0.02562 * 21 19 18 24 24 H 1.48506 * 109.47383 * 89.99619 * 23 21 19 25 25 H 1.48499 * 109.47112 * 209.99878 * 23 21 19 26 26 H 1.48505 * 109.47244 * 330.00101 * 23 21 19 27 27 O 1.34301 * 108.41872 * 359.97438 * 5 4 3 28 28 H 1.09004 * 109.47797 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47078 * 299.99936 * 1 2 3 30 30 H 1.09005 * 109.47246 * 59.99506 * 1 2 3 31 31 H 1.07997 * 126.57601 * 0.02562 * 3 2 1 32 32 H 1.08007 * 126.57604 * 180.02562 * 4 3 2 33 33 H 0.96694 * 114.00041 * 300.00344 * 8 6 5 34 34 H 1.09000 * 109.46531 * 304.99901 * 9 6 5 35 35 H 1.08999 * 109.46986 * 64.99937 * 9 6 5 36 36 H 0.96998 * 120.00085 * 359.97438 * 10 9 6 37 37 H 0.97002 * 120.00065 * 0.02562 * 13 11 10 38 38 H 1.08996 * 109.46945 * 300.00418 * 14 13 11 39 39 H 1.09005 * 109.46540 * 59.99943 * 14 13 11 40 40 H 1.08999 * 109.47447 * 59.99878 * 16 15 14 41 41 H 1.08993 * 109.47625 * 180.02562 * 16 15 14 42 42 H 1.09005 * 109.47121 * 299.99911 * 16 15 14 43 43 H 1.08996 * 109.47129 * 59.99602 * 17 15 14 44 44 H 1.08996 * 109.47443 * 179.97438 * 17 15 14 45 45 H 1.09005 * 109.46868 * 300.00131 * 17 15 14 46 46 H 1.09003 * 109.47275 * 300.00517 * 18 15 14 47 47 H 1.08995 * 109.46721 * 59.99803 * 18 15 14 48 48 H 0.96999 * 120.00287 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0911 0.0000 4 6 3.6308 0.6319 0.0006 5 6 3.5813 -0.7123 0.0004 6 6 4.7705 -1.6380 0.0014 7 1 5.6508 -1.0990 -0.3488 8 8 4.5134 -2.7446 -0.8654 9 6 5.0174 -2.1496 1.4220 10 7 6.2421 -2.9531 1.4457 11 6 6.6601 -3.5108 2.5993 12 8 6.0208 -3.3466 3.6205 13 7 7.7865 -4.2504 2.6210 14 6 8.2411 -4.8561 3.8751 15 6 9.5334 -5.6362 3.6257 16 6 9.2747 -6.7350 2.5929 17 6 10.6099 -4.6848 3.0993 18 6 10.0078 -6.2693 4.9353 19 6 11.2810 -7.0371 4.6898 20 1 11.7093 -7.0699 3.6989 21 6 11.8997 -7.6969 5.7303 22 7 13.0107 -8.3674 5.5160 23 14 11.1594 -7.6397 7.4444 24 1 10.2158 -8.7738 7.6143 25 1 12.2426 -7.7413 8.4551 26 1 10.4310 -6.3584 7.6265 27 8 2.2924 -1.0894 0.0002 28 1 -0.3635 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.9665 2.1203 0.0004 32 1 4.5212 1.2433 0.0012 33 1 3.7421 -3.2706 -0.6136 34 1 5.1254 -1.3026 2.0995 35 1 4.1741 -2.7632 1.7389 36 1 6.7519 -3.0843 0.6310 37 1 8.2967 -4.3810 1.8064 38 1 8.4258 -4.0733 4.6106 39 1 7.4739 -5.5335 4.2503 40 1 8.9366 -6.2843 1.6598 41 1 10.1952 -7.2910 2.4156 42 1 8.5078 -7.4128 2.9679 43 1 10.7942 -3.9020 3.8350 44 1 11.5307 -5.2404 2.9221 45 1 10.2717 -4.2341 2.1662 46 1 10.1920 -5.4868 5.6714 47 1 9.2408 -6.9471 5.3098 48 1 13.4458 -8.8319 6.2480 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000807591537.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:20 Heat of formation + Delta-G solvation = -107.672033 kcal Electronic energy + Delta-G solvation = -27020.089253 eV Core-core repulsion = 23075.307082 eV Total energy + Delta-G solvation = -3944.782171 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.63673 -41.18063 -39.10384 -38.38860 -35.38298 -35.17570 -34.19342 -33.93562 -33.13125 -30.53141 -29.62741 -27.96445 -27.79848 -26.57026 -24.43950 -23.60860 -22.86918 -21.96820 -21.19165 -20.13702 -19.14072 -18.89303 -18.80187 -17.43571 -17.11505 -16.93892 -16.54189 -16.25572 -16.14691 -15.71437 -15.34475 -15.27925 -15.08452 -14.86572 -14.30822 -14.17838 -14.13542 -14.05597 -13.90779 -13.79677 -13.77131 -13.40005 -12.91157 -12.83055 -12.79900 -12.61875 -12.58326 -12.28607 -12.14444 -11.76791 -11.56683 -11.49891 -11.42401 -11.13828 -10.89747 -10.87149 -10.69528 -10.41010 -9.76461 -9.30816 -8.21507 -6.21432 0.61579 1.36467 1.39261 1.49355 1.50692 1.67180 1.95620 2.15239 2.39829 3.13897 3.25190 3.27118 3.55924 3.68373 3.91051 3.94597 4.06373 4.08708 4.10568 4.18526 4.49149 4.58997 4.65807 4.69720 4.71074 4.74580 4.80222 4.82834 4.84980 4.97906 5.04054 5.04823 5.11721 5.21258 5.31831 5.37864 5.39536 5.42658 5.52112 5.57742 5.58674 5.71592 5.77581 5.99770 6.11375 6.39218 6.50497 6.85320 7.09950 7.41227 7.57891 8.93930 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.032619 B = 0.001901 C = 0.001859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.199353 B =14727.698872 C =15055.066371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.019 4.019 3 C -0.229 4.229 4 C -0.196 4.196 5 C -0.069 4.069 6 C 0.202 3.798 7 H 0.153 0.847 8 O -0.555 6.555 9 C 0.116 3.884 10 N -0.726 5.726 11 C 0.700 3.300 12 O -0.640 6.640 13 N -0.724 5.724 14 C 0.158 3.842 15 C -0.058 4.058 16 C -0.123 4.123 17 C -0.123 4.123 18 C -0.004 4.004 19 C -0.501 4.501 20 H 0.053 0.947 21 C 0.005 3.995 22 N -0.950 5.950 23 Si 0.934 3.066 24 H -0.272 1.272 25 H -0.289 1.289 26 H -0.252 1.252 27 O -0.187 6.187 28 H 0.078 0.922 29 H 0.100 0.900 30 H 0.102 0.898 31 H 0.167 0.833 32 H 0.168 0.832 33 H 0.393 0.607 34 H 0.072 0.928 35 H 0.060 0.940 36 H 0.415 0.585 37 H 0.410 0.590 38 H 0.052 0.948 39 H 0.051 0.949 40 H 0.069 0.931 41 H 0.045 0.955 42 H 0.043 0.957 43 H 0.044 0.956 44 H 0.045 0.955 45 H 0.069 0.931 46 H 0.015 0.985 47 H 0.013 0.987 48 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.835 19.555 -16.001 34.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.069 4.069 3 C -0.248 4.248 4 C -0.215 4.215 5 C -0.119 4.119 6 C 0.142 3.858 7 H 0.170 0.830 8 O -0.362 6.362 9 C -0.009 4.009 10 N -0.384 5.384 11 C 0.400 3.600 12 O -0.522 6.522 13 N -0.380 5.380 14 C 0.033 3.967 15 C -0.059 4.059 16 C -0.180 4.180 17 C -0.180 4.180 18 C -0.042 4.042 19 C -0.539 4.539 20 H 0.071 0.929 21 C -0.191 4.191 22 N -0.592 5.592 23 Si 0.759 3.241 24 H -0.198 1.198 25 H -0.215 1.215 26 H -0.176 1.176 27 O -0.084 6.084 28 H 0.097 0.903 29 H 0.118 0.882 30 H 0.121 0.879 31 H 0.185 0.815 32 H 0.185 0.815 33 H 0.243 0.757 34 H 0.090 0.910 35 H 0.078 0.922 36 H 0.252 0.748 37 H 0.247 0.753 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.087 0.913 41 H 0.064 0.936 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.064 0.936 45 H 0.088 0.912 46 H 0.033 0.967 47 H 0.031 0.969 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -23.869 19.524 -15.301 34.424 hybrid contribution 0.272 -0.527 0.826 1.017 sum -23.597 18.997 -14.475 33.574 Atomic orbital electron populations 1.20505 0.82756 1.04820 1.05097 1.23239 0.95522 0.83826 1.04285 1.21921 0.92565 1.00580 1.09744 1.21970 0.99500 0.93728 1.06273 1.23150 0.83636 0.95693 1.09412 1.20593 0.91917 0.84742 0.88539 0.82990 1.86571 1.53422 1.42220 1.53949 1.21824 0.86594 0.95269 0.97261 1.44692 1.28316 1.55412 1.09942 1.16084 0.81217 0.78916 0.83820 1.90900 1.59207 1.67629 1.34478 1.45004 1.25801 1.54150 1.13068 1.21122 0.94972 0.95601 0.84960 1.20562 0.93145 0.95339 0.96804 1.21696 1.01037 0.97630 0.97669 1.21692 0.98181 0.97922 1.00199 1.19567 0.95079 0.95312 0.94206 1.21369 1.07314 1.29218 0.96024 0.92905 1.25831 0.95252 0.95159 1.02876 1.70040 1.20170 1.35500 1.33512 0.85904 0.78284 0.79728 0.80201 1.19765 1.21485 1.17572 1.83908 1.16459 1.36156 1.71900 0.90256 0.88198 0.87939 0.81534 0.81479 0.75749 0.91009 0.92185 0.74815 0.75254 0.92977 0.93015 0.91257 0.93603 0.93762 0.93720 0.93609 0.91200 0.96691 0.96882 0.92891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.53 10.42 71.23 0.74 0.22 16 2 C -0.02 -0.27 7.32 24.83 0.18 -0.09 16 3 C -0.23 -3.21 10.81 22.19 0.24 -2.97 16 4 C -0.20 -2.87 10.80 22.19 0.24 -2.63 16 5 C -0.07 -1.08 6.18 24.83 0.15 -0.93 16 6 C 0.20 2.57 3.47 29.85 0.10 2.67 16 7 H 0.15 1.33 8.13 -2.39 -0.02 1.31 16 8 O -0.55 -7.58 13.27 -146.98 -1.95 -9.53 16 9 C 0.12 2.00 5.29 86.38 0.46 2.45 16 10 N -0.73 -13.37 5.51 -478.54 -2.64 -16.01 16 11 C 0.70 19.32 8.57 179.06 1.53 20.85 16 12 O -0.64 -23.88 16.34 -4.01 -0.07 -23.95 16 13 N -0.72 -18.45 4.96 -478.53 -2.37 -20.82 16 14 C 0.16 5.11 4.56 86.38 0.39 5.50 16 15 C -0.06 -2.05 0.54 -52.18 -0.03 -2.07 16 16 C -0.12 -4.07 8.05 71.98 0.58 -3.49 16 17 C -0.12 -4.03 8.05 71.98 0.58 -3.46 16 18 C 0.00 -0.17 3.11 29.85 0.09 -0.07 16 19 C -0.50 -27.22 8.20 25.60 0.21 -27.01 16 20 H 0.05 3.08 5.92 -2.91 -0.02 3.07 16 21 C 0.01 0.29 5.47 84.65 0.46 0.75 16 22 N -0.95 -58.67 13.96 21.45 0.30 -58.37 16 23 Si 0.93 44.63 27.47 68.60 1.88 46.52 16 24 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 25 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 26 H -0.25 -11.39 6.54 99.48 0.65 -10.74 16 27 O -0.19 -3.30 10.58 -0.47 0.00 -3.30 16 28 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.10 0.44 8.14 -2.38 -0.02 0.42 16 30 H 0.10 0.37 8.14 -2.38 -0.02 0.35 16 31 H 0.17 1.57 8.06 -2.91 -0.02 1.55 16 32 H 0.17 1.72 8.06 -2.91 -0.02 1.69 16 33 H 0.39 4.05 8.97 -74.06 -0.66 3.38 16 34 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.41 5.26 8.49 -92.71 -0.79 4.47 16 37 H 0.41 8.08 6.18 -92.71 -0.57 7.51 16 38 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 40 H 0.07 1.74 6.86 -2.39 -0.02 1.73 16 41 H 0.04 1.76 6.62 -2.39 -0.02 1.75 16 42 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 43 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 44 H 0.04 1.75 6.62 -2.39 -0.02 1.74 16 45 H 0.07 1.73 6.86 -2.38 -0.02 1.72 16 46 H 0.01 0.68 7.20 -2.39 -0.02 0.66 16 47 H 0.01 0.59 7.57 -2.39 -0.02 0.57 16 48 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -75.43 390.80 0.01 -75.43 By element: Atomic # 1 Polarization: 21.39 SS G_CDS: -1.09 Total: 20.30 kcal Atomic # 6 Polarization: -16.22 SS G_CDS: 5.94 Total: -10.28 kcal Atomic # 7 Polarization: -90.48 SS G_CDS: -4.71 Total: -95.19 kcal Atomic # 8 Polarization: -34.76 SS G_CDS: -2.02 Total: -36.78 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 1.88 Total: 46.52 kcal Total: -75.43 0.01 -75.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807591537.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.245 kcal (2) G-P(sol) polarization free energy of solvation -75.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds