Wall clock time and date at job start Tue Mar 31 2020 14:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30425 * 125.99506 * 2 1 4 4 N 1.39927 * 108.92236 * 180.02562 * 3 2 1 5 5 C 1.46501 * 125.74527 * 180.26534 * 4 3 2 6 6 C 1.53002 * 109.47059 * 246.15940 * 5 4 3 7 7 C 1.53004 * 109.46882 * 6.16282 * 5 4 3 8 8 C 1.53003 * 109.47042 * 126.16099 * 5 4 3 9 9 C 1.34223 * 108.50997 * 359.97438 * 4 3 2 10 10 C 1.50698 * 126.29436 * 179.97438 * 9 4 3 11 11 C 1.38122 * 107.41088 * 0.02562 * 9 4 3 12 12 C 1.47289 * 126.42734 * 179.97438 * 11 9 4 13 13 O 1.21528 * 119.99970 * 89.99750 * 12 11 9 14 14 O 1.34758 * 119.99889 * 269.99484 * 12 11 9 15 15 C 1.45196 * 116.99980 * 180.02562 * 14 12 11 16 16 C 1.53000 * 109.47099 * 180.02562 * 15 14 12 17 17 O 1.42901 * 109.47352 * 64.99811 * 16 15 14 18 18 C 1.42896 * 113.99913 * 180.02562 * 17 16 15 19 19 C 1.50706 * 109.47154 * 179.97438 * 18 17 16 20 20 H 1.08001 * 119.99325 * 0.02562 * 19 18 17 21 21 C 1.37877 * 120.00300 * 180.02562 * 19 18 17 22 22 N 1.31517 * 119.99466 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00064 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47134 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47247 * 119.99760 * 23 21 19 26 26 H 1.48503 * 109.47092 * 239.99887 * 23 21 19 27 27 H 1.09001 * 109.46626 * 269.99406 * 1 2 3 28 28 H 1.09000 * 109.47004 * 29.99837 * 1 2 3 29 29 H 1.09000 * 109.46902 * 150.00009 * 1 2 3 30 30 H 1.08998 * 109.46830 * 64.77894 * 6 5 4 31 31 H 1.08998 * 109.46672 * 184.77465 * 6 5 4 32 32 H 1.09000 * 109.47153 * 304.78132 * 6 5 4 33 33 H 1.08992 * 109.47187 * 59.99900 * 7 5 4 34 34 H 1.09002 * 109.46859 * 180.02562 * 7 5 4 35 35 H 1.09001 * 109.46511 * 299.99506 * 7 5 4 36 36 H 1.08995 * 109.47330 * 59.99893 * 8 5 4 37 37 H 1.09002 * 109.46942 * 179.97438 * 8 5 4 38 38 H 1.09008 * 109.47037 * 299.99903 * 8 5 4 39 39 H 1.08999 * 109.47380 * 95.17678 * 10 9 4 40 40 H 1.09003 * 109.47427 * 215.17677 * 10 9 4 41 41 H 1.09001 * 109.47641 * 335.17503 * 10 9 4 42 42 H 1.09004 * 109.46905 * 299.99569 * 15 14 12 43 43 H 1.08997 * 109.47523 * 59.99523 * 15 14 12 44 44 H 1.08996 * 109.47113 * 184.99954 * 16 15 14 45 45 H 1.09000 * 109.47100 * 304.99795 * 16 15 14 46 46 H 1.08996 * 109.47301 * 299.99571 * 18 17 16 47 47 H 1.09004 * 109.46973 * 60.00126 * 18 17 16 48 48 H 0.97006 * 119.99657 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2736 1.0552 0.0000 4 7 3.6112 0.6444 -0.0006 5 6 4.7784 1.5298 0.0047 6 6 5.5384 1.3796 -1.3147 7 6 4.3178 2.9799 0.1659 8 6 5.6980 1.1544 1.1685 9 6 3.6449 -0.6974 -0.0004 10 6 4.8815 -1.5587 -0.0014 11 6 2.3377 -1.1436 -0.0003 12 6 1.8929 -2.5477 -0.0006 13 8 1.7096 -3.1273 1.0518 14 8 1.6890 -3.1897 -1.1677 15 6 1.2506 -4.5718 -1.0921 16 6 1.0743 -5.1290 -2.5060 17 8 2.3424 -5.1702 -3.1634 18 6 2.2889 -5.6774 -4.4983 19 6 3.6739 -5.6753 -5.0923 20 1 4.5113 -5.3224 -4.5086 21 6 3.8721 -6.1240 -6.3809 22 7 2.8522 -6.5533 -7.0917 23 14 5.5889 -6.1221 -7.1169 24 1 6.5544 -5.5941 -6.1198 25 1 5.9695 -7.5084 -7.4892 26 1 5.6077 -5.2617 -8.3272 27 1 -0.3632 -0.0001 1.0277 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5138 30 1 4.9122 1.7274 -2.1362 31 1 6.4517 1.9735 -1.2774 32 1 5.7927 0.3312 -1.4702 33 1 3.7764 3.0868 1.1058 34 1 5.1862 3.6387 0.1694 35 1 3.6627 3.2472 -0.6633 36 1 6.0261 0.1213 1.0538 37 1 6.5666 1.8128 1.1722 38 1 5.1565 1.2613 2.1086 39 1 5.1276 -1.8423 1.0219 40 1 4.6990 -2.4558 -0.5931 41 1 5.7123 -1.0011 -0.4337 42 1 1.9974 -5.1613 -0.5601 43 1 0.3008 -4.6231 -0.5598 44 1 0.6609 -6.1360 -2.4507 45 1 0.3948 -4.4876 -3.0672 46 1 1.9006 -6.6957 -4.4847 47 1 1.6347 -5.0469 -5.1005 48 1 2.9917 -6.8693 -7.9982 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815193812.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:42 Heat of formation + Delta-G solvation = -70.576472 kcal Electronic energy + Delta-G solvation = -28038.162354 eV Core-core repulsion = 24094.988768 eV Total energy + Delta-G solvation = -3943.173587 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.80369 -39.83985 -37.30920 -36.88910 -35.81876 -33.11717 -32.76657 -31.75243 -30.08688 -28.35787 -27.86037 -27.54705 -27.43158 -26.86992 -23.67013 -22.38883 -21.86476 -21.10646 -19.86104 -19.12897 -17.59012 -16.82958 -16.43408 -16.25001 -15.81749 -15.72825 -15.17413 -14.78114 -14.59968 -14.43197 -14.31718 -14.04133 -13.60595 -13.59325 -13.41501 -12.91059 -12.73436 -12.66852 -12.60783 -12.55847 -12.47831 -12.41753 -12.11494 -11.98327 -11.94741 -11.50015 -11.41979 -11.37008 -10.90833 -10.87752 -10.78024 -10.69732 -10.31597 -10.26015 -10.03366 -9.26789 -9.11049 -8.87009 -8.65129 -8.20307 -6.12146 -4.13539 1.56537 2.05329 2.28808 2.31659 3.14614 3.28010 3.34346 3.40476 4.03331 4.30540 4.32471 4.32712 4.43868 4.54939 4.70817 4.75938 5.03787 5.05962 5.11925 5.15915 5.23753 5.24564 5.27136 5.28802 5.30507 5.32629 5.39296 5.48070 5.50194 5.52076 5.61439 5.70578 5.74110 5.77892 5.88084 5.90792 5.93170 5.97946 6.14231 6.40156 6.66515 6.78729 7.07152 7.41207 7.53578 7.78188 7.98123 8.13209 8.53840 8.99377 9.51113 10.99556 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.011315 B = 0.003169 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2473.892827 B = 8833.995165 C =10408.729875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.118 3.882 3 N -0.293 5.293 4 N -0.346 5.346 5 C 0.178 3.822 6 C -0.169 4.169 7 C -0.141 4.141 8 C -0.170 4.170 9 C 0.146 3.854 10 C -0.111 4.111 11 C -0.269 4.269 12 C 0.550 3.450 13 O -0.509 6.509 14 O -0.333 6.333 15 C 0.072 3.928 16 C 0.062 3.938 17 O -0.391 6.391 18 C 0.194 3.806 19 C -0.513 4.513 20 H 0.067 0.933 21 C 0.056 3.944 22 N -0.898 5.898 23 Si 0.907 3.093 24 H -0.270 1.270 25 H -0.282 1.282 26 H -0.282 1.282 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.066 0.934 39 H 0.089 0.911 40 H 0.095 0.905 41 H 0.085 0.915 42 H 0.076 0.924 43 H 0.078 0.922 44 H 0.062 0.938 45 H 0.050 0.950 46 H 0.006 0.994 47 H 0.007 0.993 48 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.746 17.053 16.531 23.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.049 4.049 3 N -0.113 5.113 4 N -0.127 5.127 5 C 0.096 3.904 6 C -0.227 4.227 7 C -0.199 4.199 8 C -0.228 4.228 9 C 0.015 3.985 10 C -0.169 4.169 11 C -0.282 4.282 12 C 0.392 3.608 13 O -0.398 6.398 14 O -0.248 6.248 15 C -0.002 4.002 16 C -0.016 4.016 17 O -0.311 6.311 18 C 0.120 3.880 19 C -0.551 4.551 20 H 0.085 0.915 21 C -0.145 4.145 22 N -0.538 5.538 23 Si 0.735 3.265 24 H -0.195 1.195 25 H -0.208 1.208 26 H -0.208 1.208 27 H 0.099 0.901 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.088 0.912 31 H 0.100 0.900 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.101 0.899 38 H 0.085 0.915 39 H 0.107 0.893 40 H 0.114 0.886 41 H 0.103 0.897 42 H 0.095 0.905 43 H 0.096 0.904 44 H 0.080 0.920 45 H 0.068 0.932 46 H 0.024 0.976 47 H 0.025 0.975 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.965 18.221 16.720 24.808 hybrid contribution 0.470 -1.214 -0.639 1.451 sum 2.435 17.007 16.081 23.532 Atomic orbital electron populations 1.20266 0.86077 1.03880 1.03331 1.22240 0.96797 0.88558 0.97302 1.77040 0.85898 1.22082 1.26308 1.48518 1.05379 1.03431 1.55330 1.20835 0.81970 0.90499 0.97071 1.22408 1.00712 1.03837 0.95695 1.21889 1.01973 0.92083 1.03917 1.22446 0.99444 1.03597 0.97329 1.21194 0.95681 0.84852 0.96748 1.20899 0.92499 0.99278 1.04211 1.18933 0.92518 0.91244 1.25487 1.20137 0.73142 0.85677 0.81820 1.90810 1.47929 1.67906 1.33114 1.86786 1.77402 1.27470 1.33188 1.23234 1.00097 0.78583 0.98290 1.22319 0.89414 0.98686 0.91142 1.87907 1.26149 1.86211 1.30789 1.20234 0.98157 0.92817 0.76805 1.21084 0.93314 1.42477 0.98266 0.91494 1.24950 0.97799 0.95165 0.96623 1.69974 1.30298 1.43102 1.10401 0.86287 0.83563 0.77720 0.78963 1.19492 1.20822 1.20835 0.90055 0.90139 0.90293 0.91154 0.90003 0.90958 0.91433 0.90836 0.90988 0.90779 0.89911 0.91472 0.89294 0.88593 0.89662 0.90516 0.90386 0.91966 0.93198 0.97617 0.97523 0.92696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.84 10.28 36.01 0.37 -0.47 16 2 C 0.12 1.66 7.27 -82.01 -0.60 1.07 16 3 N -0.29 -4.04 11.54 33.90 0.39 -3.65 16 4 N -0.35 -4.25 3.43 -44.00 -0.15 -4.40 16 5 C 0.18 1.55 1.06 -131.81 -0.14 1.41 16 6 C -0.17 -1.33 8.54 37.16 0.32 -1.01 16 7 C -0.14 -1.09 7.99 37.16 0.30 -0.79 16 8 C -0.17 -1.14 8.35 37.16 0.31 -0.83 16 9 C 0.15 1.97 6.50 -81.59 -0.53 1.44 16 10 C -0.11 -1.20 8.28 36.00 0.30 -0.90 16 11 C -0.27 -4.16 6.00 -105.08 -0.63 -4.79 16 12 C 0.55 9.30 7.21 34.41 0.25 9.55 16 13 O -0.51 -9.28 16.90 -19.29 -0.33 -9.61 16 14 O -0.33 -6.01 10.20 -43.43 -0.44 -6.45 16 15 C 0.07 1.18 5.85 37.16 0.22 1.40 16 16 C 0.06 1.15 6.33 37.16 0.24 1.39 16 17 O -0.39 -9.54 10.30 -38.80 -0.40 -9.94 16 18 C 0.19 5.33 5.69 36.01 0.20 5.54 16 19 C -0.51 -15.14 9.43 -34.44 -0.32 -15.46 16 20 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 21 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 22 N -0.90 -26.84 13.29 55.43 0.74 -26.11 16 23 Si 0.91 21.74 29.54 -169.99 -5.02 16.72 16 24 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 26 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 27 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.08 0.85 8.01 -51.93 -0.42 0.44 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.61 5.51 -51.93 -0.29 0.32 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 0.64 8.11 -51.93 -0.42 0.22 16 36 H 0.07 0.49 5.10 -51.93 -0.27 0.22 16 37 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 39 H 0.09 0.82 7.97 -51.93 -0.41 0.41 16 40 H 0.10 1.19 8.09 -51.93 -0.42 0.77 16 41 H 0.08 0.72 4.43 -51.93 -0.23 0.49 16 42 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 43 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 47 H 0.01 0.20 8.14 -51.93 -0.42 -0.23 16 48 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 398.07 15.07 6.00 6.00 Total: -1.00 -35.28 398.07 -6.95 -42.23 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: -7.91 Total: -3.85 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: 0.18 Total: -0.95 kcal Atomic # 7 Polarization: -35.13 SS G_CDS: 0.98 Total: -34.15 kcal Atomic # 8 Polarization: -24.83 SS G_CDS: -1.17 Total: -26.00 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -35.28 -6.95 -42.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815193812.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.351 kcal (2) G-P(sol) polarization free energy of solvation -35.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds