Wall clock time and date at job start Tue Mar 31 2020 14:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30425 * 125.99506 * 2 1 4 4 N 1.39927 * 108.92236 * 180.02562 * 3 2 1 5 5 C 1.46501 * 125.74527 * 180.26534 * 4 3 2 6 6 C 1.53002 * 109.47059 * 246.15940 * 5 4 3 7 7 C 1.53004 * 109.46882 * 6.16282 * 5 4 3 8 8 C 1.53003 * 109.47042 * 126.16099 * 5 4 3 9 9 C 1.34223 * 108.50997 * 359.97438 * 4 3 2 10 10 C 1.50698 * 126.29436 * 179.97438 * 9 4 3 11 11 C 1.38122 * 107.41088 * 0.02562 * 9 4 3 12 12 C 1.47289 * 126.42734 * 179.97438 * 11 9 4 13 13 O 1.21528 * 119.99970 * 89.99750 * 12 11 9 14 14 O 1.34758 * 119.99889 * 269.99484 * 12 11 9 15 15 C 1.45196 * 116.99980 * 180.02562 * 14 12 11 16 16 C 1.53000 * 109.47099 * 180.02562 * 15 14 12 17 17 O 1.42901 * 109.47352 * 64.99811 * 16 15 14 18 18 C 1.42896 * 113.99913 * 180.02562 * 17 16 15 19 19 C 1.50706 * 109.47154 * 179.97438 * 18 17 16 20 20 H 1.08001 * 119.99325 * 0.02562 * 19 18 17 21 21 C 1.37877 * 120.00300 * 180.02562 * 19 18 17 22 22 N 1.31517 * 119.99466 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00064 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47134 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47247 * 119.99760 * 23 21 19 26 26 H 1.48503 * 109.47092 * 239.99887 * 23 21 19 27 27 H 1.09001 * 109.46626 * 269.99406 * 1 2 3 28 28 H 1.09000 * 109.47004 * 29.99837 * 1 2 3 29 29 H 1.09000 * 109.46902 * 150.00009 * 1 2 3 30 30 H 1.08998 * 109.46830 * 64.77894 * 6 5 4 31 31 H 1.08998 * 109.46672 * 184.77465 * 6 5 4 32 32 H 1.09000 * 109.47153 * 304.78132 * 6 5 4 33 33 H 1.08992 * 109.47187 * 59.99900 * 7 5 4 34 34 H 1.09002 * 109.46859 * 180.02562 * 7 5 4 35 35 H 1.09001 * 109.46511 * 299.99506 * 7 5 4 36 36 H 1.08995 * 109.47330 * 59.99893 * 8 5 4 37 37 H 1.09002 * 109.46942 * 179.97438 * 8 5 4 38 38 H 1.09008 * 109.47037 * 299.99903 * 8 5 4 39 39 H 1.08999 * 109.47380 * 95.17678 * 10 9 4 40 40 H 1.09003 * 109.47427 * 215.17677 * 10 9 4 41 41 H 1.09001 * 109.47641 * 335.17503 * 10 9 4 42 42 H 1.09004 * 109.46905 * 299.99569 * 15 14 12 43 43 H 1.08997 * 109.47523 * 59.99523 * 15 14 12 44 44 H 1.08996 * 109.47113 * 184.99954 * 16 15 14 45 45 H 1.09000 * 109.47100 * 304.99795 * 16 15 14 46 46 H 1.08996 * 109.47301 * 299.99571 * 18 17 16 47 47 H 1.09004 * 109.46973 * 60.00126 * 18 17 16 48 48 H 0.97006 * 119.99657 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2736 1.0552 0.0000 4 7 3.6112 0.6444 -0.0006 5 6 4.7784 1.5298 0.0047 6 6 5.5384 1.3796 -1.3147 7 6 4.3178 2.9799 0.1659 8 6 5.6980 1.1544 1.1685 9 6 3.6449 -0.6974 -0.0004 10 6 4.8815 -1.5587 -0.0014 11 6 2.3377 -1.1436 -0.0003 12 6 1.8929 -2.5477 -0.0006 13 8 1.7096 -3.1273 1.0518 14 8 1.6890 -3.1897 -1.1677 15 6 1.2506 -4.5718 -1.0921 16 6 1.0743 -5.1290 -2.5060 17 8 2.3424 -5.1702 -3.1634 18 6 2.2889 -5.6774 -4.4983 19 6 3.6739 -5.6753 -5.0923 20 1 4.5113 -5.3224 -4.5086 21 6 3.8721 -6.1240 -6.3809 22 7 2.8522 -6.5533 -7.0917 23 14 5.5889 -6.1221 -7.1169 24 1 6.5544 -5.5941 -6.1198 25 1 5.9695 -7.5084 -7.4892 26 1 5.6077 -5.2617 -8.3272 27 1 -0.3632 -0.0001 1.0277 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5138 30 1 4.9122 1.7274 -2.1362 31 1 6.4517 1.9735 -1.2774 32 1 5.7927 0.3312 -1.4702 33 1 3.7764 3.0868 1.1058 34 1 5.1862 3.6387 0.1694 35 1 3.6627 3.2472 -0.6633 36 1 6.0261 0.1213 1.0538 37 1 6.5666 1.8128 1.1722 38 1 5.1565 1.2613 2.1086 39 1 5.1276 -1.8423 1.0219 40 1 4.6990 -2.4558 -0.5931 41 1 5.7123 -1.0011 -0.4337 42 1 1.9974 -5.1613 -0.5601 43 1 0.3008 -4.6231 -0.5598 44 1 0.6609 -6.1360 -2.4507 45 1 0.3948 -4.4876 -3.0672 46 1 1.9006 -6.6957 -4.4847 47 1 1.6347 -5.0469 -5.1005 48 1 2.9917 -6.8693 -7.9982 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815193812.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:41 Heat of formation + Delta-G solvation = -91.987864 kcal Electronic energy + Delta-G solvation = -28039.090822 eV Core-core repulsion = 24094.988768 eV Total energy + Delta-G solvation = -3944.102054 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.79514 -41.16021 -38.73740 -37.99008 -37.30502 -34.94402 -34.03176 -32.74101 -31.61173 -29.42951 -28.89662 -28.45273 -28.40823 -28.09174 -24.94757 -24.48299 -23.23603 -22.05534 -21.00574 -20.03086 -18.83196 -18.69053 -17.86245 -17.82795 -16.99232 -16.78613 -16.63736 -16.30130 -16.19958 -15.50967 -15.23320 -15.16136 -14.94011 -14.50088 -14.42813 -14.19984 -14.00275 -13.75254 -13.65200 -13.37644 -13.27318 -13.22793 -13.13742 -13.12192 -12.90023 -12.80526 -12.73909 -12.72643 -12.47654 -12.29732 -12.16409 -12.00995 -11.73269 -11.69106 -11.43608 -11.26311 -10.90049 -10.27173 -10.21669 -9.71324 -8.32340 -6.44441 0.54934 0.98111 1.12314 1.29138 1.40291 1.41832 1.56352 1.92756 2.34586 3.01720 3.06674 3.25038 3.38867 3.68952 3.70310 3.81287 3.84023 3.91770 3.93741 4.11083 4.19849 4.42476 4.43262 4.51012 4.51273 4.55235 4.59062 4.61886 4.66315 4.67851 4.68189 4.78408 4.80189 4.81797 4.85572 4.89917 4.94612 5.13039 5.17348 5.20693 5.22807 5.31490 5.47489 5.54596 5.91065 5.95164 6.49715 6.51976 6.66364 6.79775 7.27157 8.80240 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.011315 B = 0.003169 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2473.892827 B = 8833.995165 C =10408.729875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.107 3.893 3 N -0.307 5.307 4 N -0.341 5.341 5 C 0.165 3.835 6 C -0.167 4.167 7 C -0.137 4.137 8 C -0.167 4.167 9 C 0.146 3.854 10 C -0.110 4.110 11 C -0.309 4.309 12 C 0.559 3.441 13 O -0.527 6.527 14 O -0.352 6.352 15 C 0.075 3.925 16 C 0.054 3.946 17 O -0.408 6.408 18 C 0.208 3.792 19 C -0.548 4.548 20 H 0.061 0.939 21 C 0.007 3.993 22 N -0.930 5.930 23 Si 0.983 3.017 24 H -0.263 1.263 25 H -0.270 1.270 26 H -0.272 1.272 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.075 0.925 30 H 0.053 0.947 31 H 0.113 0.887 32 H 0.066 0.934 33 H 0.057 0.943 34 H 0.104 0.896 35 H 0.055 0.945 36 H 0.075 0.925 37 H 0.112 0.888 38 H 0.058 0.942 39 H 0.106 0.894 40 H 0.075 0.925 41 H 0.110 0.890 42 H 0.075 0.925 43 H 0.111 0.889 44 H 0.085 0.915 45 H 0.054 0.946 46 H -0.007 1.007 47 H -0.013 1.013 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.673 18.057 16.885 24.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.059 4.059 3 N -0.128 5.128 4 N -0.121 5.121 5 C 0.084 3.916 6 C -0.224 4.224 7 C -0.194 4.194 8 C -0.224 4.224 9 C 0.013 3.987 10 C -0.167 4.167 11 C -0.322 4.322 12 C 0.402 3.598 13 O -0.417 6.417 14 O -0.268 6.268 15 C 0.001 3.999 16 C -0.022 4.022 17 O -0.328 6.328 18 C 0.133 3.867 19 C -0.586 4.586 20 H 0.079 0.921 21 C -0.192 4.192 22 N -0.569 5.569 23 Si 0.805 3.195 24 H -0.187 1.187 25 H -0.195 1.195 26 H -0.197 1.197 27 H 0.113 0.887 28 H 0.112 0.888 29 H 0.094 0.906 30 H 0.072 0.928 31 H 0.132 0.868 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.122 0.878 35 H 0.074 0.926 36 H 0.094 0.906 37 H 0.131 0.869 38 H 0.077 0.923 39 H 0.124 0.876 40 H 0.094 0.906 41 H 0.128 0.872 42 H 0.093 0.907 43 H 0.129 0.871 44 H 0.103 0.897 45 H 0.072 0.928 46 H 0.011 0.989 47 H 0.004 0.996 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.878 19.247 17.091 26.031 hybrid contribution -0.169 -1.477 -0.714 1.649 sum 3.709 17.770 16.377 24.449 Atomic orbital electron populations 1.20361 0.84418 1.04365 1.04333 1.22689 0.98114 0.88128 0.97011 1.76990 0.86798 1.22243 1.26777 1.48949 1.05747 1.03489 1.53891 1.21319 0.81263 0.90470 0.98502 1.22428 1.01552 1.03971 0.94495 1.21884 1.02865 0.92005 1.02641 1.22463 0.99763 1.04461 0.95760 1.21558 0.95873 0.85663 0.95644 1.20994 0.92250 0.98350 1.05138 1.19144 0.93961 0.90768 1.28313 1.20319 0.72298 0.86018 0.81124 1.90781 1.48908 1.68510 1.33467 1.86779 1.77703 1.28132 1.34163 1.23277 1.01717 0.78024 0.96854 1.22645 0.87331 1.00387 0.91877 1.87856 1.29527 1.86064 1.29392 1.19872 0.97065 0.91638 0.78122 1.21413 0.93974 1.43869 0.99341 0.92076 1.25957 1.02598 0.93967 0.96676 1.70074 1.32768 1.43102 1.10988 0.85143 0.77772 0.78386 0.78162 1.18723 1.19547 1.19710 0.88730 0.88772 0.90616 0.92823 0.86830 0.91558 0.92387 0.87767 0.92607 0.90601 0.86933 0.92324 0.87568 0.90590 0.87217 0.90666 0.87122 0.89719 0.92786 0.98919 0.99554 0.92016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.66 10.28 71.24 0.73 -0.92 16 2 C 0.11 3.06 7.27 43.53 0.32 3.37 16 3 N -0.31 -8.50 11.54 -46.65 -0.54 -9.03 16 4 N -0.34 -8.20 3.43 -293.11 -1.01 -9.21 16 5 C 0.16 2.60 1.06 3.61 0.00 2.60 16 6 C -0.17 -2.31 8.54 71.98 0.61 -1.69 16 7 C -0.14 -1.89 7.99 71.98 0.57 -1.31 16 8 C -0.17 -1.82 8.35 71.98 0.60 -1.22 16 9 C 0.15 3.90 6.50 42.17 0.27 4.17 16 10 C -0.11 -2.30 8.28 71.24 0.59 -1.71 16 11 C -0.31 -9.71 6.00 -20.16 -0.12 -9.83 16 12 C 0.56 19.20 7.21 70.20 0.51 19.71 16 13 O -0.53 -19.34 16.90 19.75 0.33 -19.01 16 14 O -0.35 -12.89 10.20 -54.02 -0.55 -13.44 16 15 C 0.07 2.43 5.85 71.98 0.42 2.85 16 16 C 0.05 2.03 6.33 71.98 0.46 2.48 16 17 O -0.41 -20.37 10.30 -145.57 -1.50 -21.86 16 18 C 0.21 11.76 5.69 71.24 0.41 12.16 16 19 C -0.55 -32.87 9.43 25.60 0.24 -32.63 16 20 H 0.06 3.64 7.81 -2.91 -0.02 3.61 16 21 C 0.01 0.37 5.46 84.65 0.46 0.84 16 22 N -0.93 -55.81 13.29 21.45 0.28 -55.53 16 23 Si 0.98 44.16 29.54 68.60 2.03 46.18 16 24 H -0.26 -11.42 7.11 99.48 0.71 -10.72 16 25 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 26 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 27 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.07 1.66 8.01 -2.39 -0.02 1.64 16 30 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.07 1.00 5.51 -2.39 -0.01 0.98 16 33 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.05 0.95 8.11 -2.39 -0.02 0.93 16 36 H 0.08 0.81 5.10 -2.39 -0.01 0.80 16 37 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 38 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 39 H 0.11 1.84 7.97 -2.39 -0.02 1.82 16 40 H 0.08 1.92 8.09 -2.39 -0.02 1.90 16 41 H 0.11 1.69 4.43 -2.39 -0.01 1.68 16 42 H 0.07 2.47 8.14 -2.38 -0.02 2.45 16 43 H 0.11 2.88 8.14 -2.39 -0.02 2.86 16 44 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 45 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 46 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 47 H -0.01 -0.79 8.14 -2.38 -0.02 -0.81 16 48 H 0.27 15.00 8.31 -92.70 -0.77 14.23 16 Total: -1.00 -77.20 398.07 6.07 -71.13 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: 0.94 Total: 11.90 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: 6.08 Total: -1.13 kcal Atomic # 7 Polarization: -72.51 SS G_CDS: -1.26 Total: -73.77 kcal Atomic # 8 Polarization: -52.59 SS G_CDS: -1.72 Total: -54.31 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.18 kcal Total: -77.20 6.07 -71.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815193812.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.862 kcal (2) G-P(sol) polarization free energy of solvation -77.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds