Wall clock time and date at job start Tue Mar 31 2020 15:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50696 * 109.47356 * 2 1 4 4 C 1.38129 * 126.29879 * 276.32987 * 3 2 1 5 5 C 1.47285 * 126.42402 * 359.97438 * 4 3 2 6 6 O 1.21528 * 119.99981 * 359.97438 * 5 4 3 7 7 O 1.34756 * 120.00204 * 180.02562 * 5 4 3 8 8 C 1.45196 * 117.00040 * 179.97438 * 7 5 4 9 9 C 1.53002 * 109.46798 * 179.97438 * 8 7 5 10 10 O 1.42901 * 109.47180 * 65.00056 * 9 8 7 11 11 C 1.42906 * 114.00258 * 179.97438 * 10 9 8 12 12 C 1.50701 * 109.47180 * 179.97438 * 11 10 9 13 13 H 1.07995 * 119.99863 * 0.02562 * 12 11 10 14 14 C 1.37878 * 119.99533 * 180.02562 * 12 11 10 15 15 N 1.31516 * 120.00448 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 119.99712 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.46987 * 59.99717 * 16 14 12 18 18 H 1.48495 * 109.46886 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.46879 * 299.99825 * 16 14 12 20 20 C 1.41340 * 107.14679 * 179.97438 * 4 3 2 21 21 N 1.30427 * 108.01698 * 0.02562 * 20 4 3 22 22 N 1.34222 * 126.29622 * 96.01545 * 3 2 1 23 23 C 1.46497 * 125.74155 * 0.02562 * 22 3 2 24 24 C 1.52993 * 109.47251 * 66.41129 * 23 22 3 25 25 C 1.53006 * 109.47112 * 186.41301 * 23 22 3 26 26 C 1.53004 * 109.47358 * 306.41213 * 23 22 3 27 27 H 1.08992 * 109.47400 * 56.06917 * 1 2 3 28 28 H 1.08999 * 109.46969 * 176.07183 * 1 2 3 29 29 H 1.09000 * 109.46957 * 296.06508 * 1 2 3 30 30 H 1.09000 * 109.47395 * 120.00256 * 2 1 3 31 31 H 1.09000 * 109.46884 * 239.99977 * 2 1 3 32 32 H 1.08999 * 109.47309 * 299.99420 * 8 7 5 33 33 H 1.09000 * 109.47691 * 60.00128 * 8 7 5 34 34 H 1.09002 * 109.47063 * 184.99656 * 9 8 7 35 35 H 1.09001 * 109.47498 * 304.99716 * 9 8 7 36 36 H 1.08999 * 109.46810 * 300.00092 * 11 10 9 37 37 H 1.09002 * 109.46655 * 59.99606 * 11 10 9 38 38 H 0.96994 * 120.00336 * 180.02562 * 15 14 12 39 39 H 1.07999 * 125.98827 * 180.02562 * 20 4 3 40 40 H 1.09003 * 109.47065 * 54.55311 * 24 23 22 41 41 H 1.09004 * 109.47376 * 174.54861 * 24 23 22 42 42 H 1.09002 * 109.47436 * 294.54845 * 24 23 22 43 43 H 1.08991 * 109.47315 * 59.99829 * 25 23 22 44 44 H 1.08999 * 109.47248 * 180.02562 * 25 23 22 45 45 H 1.09006 * 109.46804 * 299.99677 * 25 23 22 46 46 H 1.08994 * 109.47155 * 68.08298 * 26 23 22 47 47 H 1.09000 * 109.46929 * 188.09084 * 26 23 22 48 48 H 1.09001 * 109.46824 * 308.08361 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.1892 2.2326 -1.1065 5 6 1.8977 1.8717 -2.5043 6 8 1.4756 0.7636 -2.7705 7 8 2.1000 2.7699 -3.4884 8 6 1.7917 2.3451 -4.8421 9 6 2.0819 3.4903 -5.8144 10 8 3.4832 3.7703 -5.8159 11 6 3.8634 4.8297 -6.6964 12 6 5.3538 5.0383 -6.6173 13 1 5.9510 4.4231 -5.9607 14 6 5.9548 6.0146 -7.3833 15 7 5.2276 6.7634 -8.1833 16 14 7.8024 6.2727 -7.2858 17 1 8.4984 5.0235 -7.6859 18 1 8.1973 7.3736 -8.2006 19 1 8.1800 6.6257 -5.8936 20 6 2.6820 3.4746 -0.6455 21 7 2.8091 3.4022 0.6505 22 7 2.4041 2.1321 1.0758 23 6 2.3917 1.6573 2.4617 24 6 3.4264 0.5427 2.6282 25 6 2.7342 2.8156 3.4008 26 6 1.0014 1.1176 2.8035 27 1 -0.3634 0.5736 -0.8526 28 1 -0.3633 -1.0253 -0.0704 29 1 -0.3633 0.4516 0.9232 30 1 1.8933 -0.5139 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 2.4065 1.4833 -5.1015 33 1 0.7383 2.0726 -4.9065 34 1 1.7677 3.2033 -6.8180 35 1 1.5341 4.3795 -5.5025 36 1 3.5862 4.5701 -7.7181 37 1 3.3524 5.7468 -6.4032 38 1 5.6505 7.4500 -8.7224 39 1 2.9127 4.3329 -1.2590 40 1 4.4007 0.8983 2.2928 41 1 3.4860 0.2561 3.6782 42 1 3.1298 -0.3205 2.0323 43 1 1.9971 3.6097 3.2821 44 1 2.7254 2.4623 4.4318 45 1 3.7247 3.2000 3.1572 46 1 0.8156 0.2062 2.2354 47 1 0.9489 0.8982 3.8699 48 1 0.2492 1.8643 2.5488 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815194165.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:24 Heat of formation + Delta-G solvation = -90.447139 kcal Electronic energy + Delta-G solvation = -27836.095380 eV Core-core repulsion = 23892.060136 eV Total energy + Delta-G solvation = -3944.035243 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.83833 -41.02242 -38.69890 -37.89890 -37.29610 -35.04836 -34.93379 -32.09657 -31.37195 -30.44453 -28.98707 -28.45775 -28.35593 -25.64365 -24.56322 -24.10536 -23.30101 -23.08186 -21.27437 -19.85109 -18.68256 -18.63742 -17.87661 -17.67636 -17.06598 -16.86356 -16.52233 -16.26815 -16.18105 -16.08561 -15.52868 -15.22989 -14.83164 -14.53947 -14.34167 -14.23612 -14.05802 -13.70495 -13.40766 -13.32354 -13.22526 -13.15319 -13.13598 -12.91673 -12.83583 -12.74224 -12.67838 -12.41603 -12.31199 -12.17782 -11.97107 -11.95322 -11.65502 -11.49482 -11.34677 -11.28101 -10.88444 -10.45845 -10.25794 -9.82761 -8.32051 -6.44099 0.27361 0.97635 1.16630 1.39628 1.44433 1.52775 1.83553 2.13283 2.34550 3.01640 3.09210 3.29542 3.35145 3.69786 3.75276 3.80920 3.82213 3.96427 3.98401 4.14747 4.26845 4.31921 4.43132 4.47120 4.48515 4.56712 4.58203 4.61334 4.66990 4.75783 4.76349 4.78826 4.83765 4.86656 4.91037 5.06387 5.11677 5.18173 5.18841 5.21779 5.32248 5.38615 5.51862 5.54561 5.88075 5.95723 6.44974 6.51041 6.79510 6.84896 7.27318 8.79974 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.015895 B = 0.002577 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.115896 B =10862.956194 C =12066.950795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.072 4.072 3 C 0.179 3.821 4 C -0.314 4.314 5 C 0.542 3.458 6 O -0.537 6.537 7 O -0.357 6.357 8 C 0.082 3.918 9 C 0.054 3.946 10 O -0.409 6.409 11 C 0.208 3.792 12 C -0.551 4.551 13 H 0.059 0.941 14 C 0.008 3.992 15 N -0.929 5.929 16 Si 0.981 3.019 17 H -0.266 1.266 18 H -0.273 1.273 19 H -0.267 1.267 20 C 0.094 3.906 21 N -0.313 5.313 22 N -0.339 5.339 23 C 0.163 3.837 24 C -0.165 4.165 25 C -0.140 4.140 26 C -0.170 4.170 27 H 0.039 0.961 28 H 0.087 0.913 29 H 0.073 0.927 30 H 0.111 0.889 31 H 0.091 0.909 32 H 0.071 0.929 33 H 0.109 0.891 34 H 0.083 0.917 35 H 0.055 0.945 36 H -0.007 1.007 37 H -0.011 1.011 38 H 0.271 0.729 39 H 0.197 0.803 40 H 0.049 0.951 41 H 0.113 0.887 42 H 0.075 0.925 43 H 0.055 0.945 44 H 0.106 0.894 45 H 0.053 0.947 46 H 0.086 0.914 47 H 0.112 0.888 48 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.970 -15.222 26.056 32.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.110 4.110 3 C 0.044 3.956 4 C -0.327 4.327 5 C 0.389 3.611 6 O -0.429 6.429 7 O -0.273 6.273 8 C 0.008 3.992 9 C -0.023 4.023 10 O -0.329 6.329 11 C 0.134 3.866 12 C -0.588 4.588 13 H 0.077 0.923 14 C -0.191 4.191 15 N -0.568 5.568 16 Si 0.804 3.196 17 H -0.191 1.191 18 H -0.198 1.198 19 H -0.192 1.192 20 C -0.093 4.093 21 N -0.131 5.131 22 N -0.118 5.118 23 C 0.082 3.918 24 C -0.223 4.223 25 C -0.197 4.197 26 C -0.228 4.228 27 H 0.058 0.942 28 H 0.106 0.894 29 H 0.091 0.909 30 H 0.129 0.871 31 H 0.110 0.890 32 H 0.089 0.911 33 H 0.127 0.873 34 H 0.101 0.899 35 H 0.073 0.927 36 H 0.010 0.990 37 H 0.007 0.993 38 H 0.080 0.920 39 H 0.214 0.786 40 H 0.069 0.931 41 H 0.132 0.868 42 H 0.094 0.906 43 H 0.074 0.926 44 H 0.124 0.876 45 H 0.072 0.928 46 H 0.104 0.896 47 H 0.130 0.870 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.594 -14.860 27.168 32.729 hybrid contribution 0.417 0.477 -1.785 1.895 sum -10.177 -14.383 25.383 30.899 Atomic orbital electron populations 1.21816 0.92226 1.03805 1.02229 1.20737 0.98090 0.86757 1.05420 1.21762 0.92449 0.95636 0.85737 1.19206 1.24678 0.98103 0.90666 1.20182 0.73498 0.81986 0.85424 1.90738 1.45055 1.22501 1.84626 1.86623 1.79007 1.44141 1.17532 1.23159 1.02111 0.97005 0.76879 1.22653 0.83972 0.97509 0.98138 1.87872 1.22886 1.55999 1.66150 1.19860 0.95226 0.84142 0.87412 1.21355 0.92849 1.18940 1.25693 0.92301 1.25928 1.04553 0.94540 0.94038 1.70048 1.38200 1.21846 1.26694 0.85266 0.77500 0.78261 0.78594 1.19063 1.19760 1.19161 1.24334 0.95052 0.97942 0.91973 1.77173 1.23397 0.99668 1.12879 1.49243 1.46641 1.08692 1.07248 1.21373 0.99143 0.96274 0.74975 1.22429 0.97302 0.96891 1.05637 1.21916 1.02181 0.96387 0.99256 1.22636 0.92527 1.02198 1.05424 0.94197 0.89376 0.90863 0.87103 0.89047 0.91058 0.87342 0.89911 0.92658 0.98960 0.99317 0.91973 0.78611 0.93138 0.86848 0.90624 0.92621 0.87583 0.92756 0.89569 0.86951 0.92514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 9.40 71.98 0.68 -1.44 16 2 C -0.07 -1.22 4.69 29.85 0.14 -1.08 16 3 C 0.18 4.21 5.78 42.17 0.24 4.46 16 4 C -0.31 -9.41 6.13 -20.16 -0.12 -9.54 16 5 C 0.54 18.23 7.95 70.20 0.56 18.78 16 6 O -0.54 -18.22 14.55 19.75 0.29 -17.93 16 7 O -0.36 -13.04 10.04 -54.01 -0.54 -13.58 16 8 C 0.08 2.71 5.85 71.98 0.42 3.13 16 9 C 0.05 2.05 6.33 71.98 0.46 2.50 16 10 O -0.41 -20.81 10.30 -145.56 -1.50 -22.30 16 11 C 0.21 11.96 5.69 71.24 0.41 12.37 16 12 C -0.55 -33.71 9.43 25.60 0.24 -33.47 16 13 H 0.06 3.59 7.81 -2.91 -0.02 3.57 16 14 C 0.01 0.48 5.46 84.65 0.46 0.94 16 15 N -0.93 -56.45 13.29 21.45 0.28 -56.17 16 16 Si 0.98 45.32 29.54 68.60 2.03 47.34 16 17 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 18 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 19 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 20 C 0.09 2.81 11.87 85.66 1.02 3.82 16 21 N -0.31 -8.65 11.54 -56.25 -0.65 -9.29 16 22 N -0.34 -7.35 3.43 -293.12 -1.01 -8.35 16 23 C 0.16 2.11 1.06 3.61 0.00 2.12 16 24 C -0.16 -1.57 8.49 71.98 0.61 -0.96 16 25 C -0.14 -1.75 7.98 71.98 0.57 -1.17 16 26 C -0.17 -1.34 7.24 71.98 0.52 -0.82 16 27 H 0.04 0.81 7.90 -2.39 -0.02 0.80 16 28 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.07 0.84 5.71 -2.39 -0.01 0.83 16 30 H 0.11 1.17 4.17 -2.39 -0.01 1.16 16 31 H 0.09 1.92 6.86 -2.39 -0.02 1.90 16 32 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 33 H 0.11 2.88 8.14 -2.39 -0.02 2.87 16 34 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 35 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 36 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 37 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 38 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 39 H 0.20 5.64 8.06 -2.91 -0.02 5.62 16 40 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.11 0.40 8.14 -2.38 -0.02 0.38 16 42 H 0.07 0.62 5.63 -2.39 -0.01 0.61 16 43 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 45 H 0.05 0.89 8.11 -2.38 -0.02 0.87 16 46 H 0.09 0.56 4.04 -2.39 -0.01 0.55 16 47 H 0.11 0.25 8.13 -2.39 -0.02 0.23 16 48 H 0.06 0.62 8.01 -2.39 -0.02 0.60 16 Total: -1.00 -76.74 389.65 6.06 -70.68 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: 0.95 Total: 9.96 kcal Atomic # 6 Polarization: -6.56 SS G_CDS: 6.21 Total: -0.35 kcal Atomic # 7 Polarization: -72.44 SS G_CDS: -1.37 Total: -73.81 kcal Atomic # 8 Polarization: -52.07 SS G_CDS: -1.75 Total: -53.82 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.34 kcal Total: -76.74 6.06 -70.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815194165.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.769 kcal (2) G-P(sol) polarization free energy of solvation -76.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds