Wall clock time and date at job start Tue Mar 31 2020 14:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30838 * 125.90302 * 2 1 4 4 N 1.40080 * 108.20608 * 180.02562 * 3 2 1 5 5 C 1.46504 * 126.03159 * 179.97438 * 4 3 2 6 6 C 1.34949 * 107.92808 * 359.76071 * 4 3 2 7 7 C 1.50699 * 126.12650 * 180.23469 * 6 4 3 8 8 C 1.35311 * 107.74329 * 0.38748 * 6 4 3 9 9 C 1.50698 * 126.03857 * 179.87035 * 8 6 4 10 10 C 1.52999 * 109.47607 * 269.71329 * 9 8 6 11 11 H 1.08995 * 109.47159 * 305.00425 * 10 9 8 12 12 C 1.53002 * 109.46559 * 64.99978 * 10 9 8 13 13 C 1.50696 * 109.47581 * 184.99692 * 10 9 8 14 14 O 1.20833 * 119.99595 * 0.02562 * 13 10 9 15 15 O 1.34224 * 120.00302 * 180.02562 * 13 10 9 16 16 C 1.45206 * 117.00077 * 180.02562 * 15 13 10 17 17 C 1.52999 * 109.46777 * 179.97438 * 16 15 13 18 18 O 1.42904 * 109.47221 * 65.00539 * 17 16 15 19 19 C 1.42898 * 113.99912 * 179.97438 * 18 17 16 20 20 C 1.50704 * 109.46866 * 179.97438 * 19 18 17 21 21 H 1.08000 * 119.99934 * 359.97438 * 20 19 18 22 22 C 1.37879 * 119.99914 * 179.97438 * 20 19 18 23 23 N 1.31514 * 119.99894 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00076 * 179.97438 * 22 20 19 25 25 H 1.48508 * 109.46877 * 60.00141 * 24 22 20 26 26 H 1.48495 * 109.47294 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47096 * 300.00401 * 24 22 20 28 28 H 1.08997 * 109.46624 * 269.97327 * 1 2 3 29 29 H 1.09003 * 109.47080 * 29.96532 * 1 2 3 30 30 H 1.08992 * 109.47299 * 149.97316 * 1 2 3 31 31 H 1.09002 * 109.46766 * 90.03297 * 5 4 3 32 32 H 1.09002 * 109.46756 * 210.02263 * 5 4 3 33 33 H 1.08992 * 109.47876 * 330.03042 * 5 4 3 34 34 H 1.08993 * 109.47430 * 270.17831 * 7 6 4 35 35 H 1.08999 * 109.47041 * 30.18176 * 7 6 4 36 36 H 1.09007 * 109.46641 * 150.17734 * 7 6 4 37 37 H 1.09006 * 109.46930 * 149.71728 * 9 8 6 38 38 H 1.09003 * 109.47382 * 29.72037 * 9 8 6 39 39 H 1.09003 * 109.47318 * 60.00361 * 12 10 9 40 40 H 1.09008 * 109.46908 * 179.97438 * 12 10 9 41 41 H 1.09003 * 109.47422 * 300.00309 * 12 10 9 42 42 H 1.09000 * 109.47070 * 300.00162 * 16 15 13 43 43 H 1.09001 * 109.46626 * 60.00180 * 16 15 13 44 44 H 1.09000 * 109.46738 * 185.00050 * 17 16 15 45 45 H 1.08994 * 109.47465 * 305.00137 * 17 16 15 46 46 H 1.09001 * 109.47167 * 299.99421 * 19 18 17 47 47 H 1.08999 * 109.47239 * 59.99584 * 19 18 17 48 48 H 0.96999 * 120.00107 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2743 1.0598 0.0000 4 7 3.6088 0.6340 -0.0006 5 6 4.7899 1.5007 -0.0013 6 6 3.6142 -0.7155 0.0044 7 6 4.8350 -1.5990 0.0107 8 6 2.3272 -1.1331 -0.0007 9 6 1.8599 -2.5658 -0.0005 10 6 1.7013 -3.0507 -1.4429 11 1 1.0356 -2.3765 -1.9818 12 6 3.0695 -3.0713 -2.1273 13 6 1.1179 -4.4402 -1.4446 14 8 0.8555 -4.9864 -0.3992 15 8 0.8899 -5.0710 -2.6072 16 6 0.3260 -6.4071 -2.5327 17 6 0.1378 -6.9606 -3.9466 18 8 1.4141 -7.1232 -4.5684 19 6 1.3507 -7.6383 -5.8998 20 6 2.7456 -7.7677 -6.4553 21 1 3.5955 -7.4844 -5.8521 22 6 2.9367 -8.2476 -7.7336 23 7 1.9017 -8.5920 -8.4683 24 14 4.6657 -8.4073 -8.4225 25 1 5.4546 -9.3328 -7.5701 26 1 4.5999 -8.9439 -9.8056 27 1 5.3171 -7.0730 -8.4391 28 1 -0.3632 -0.0005 1.0277 29 1 -0.3633 0.8903 -0.5133 30 1 -0.3633 -0.8897 -0.5142 31 1 5.0837 1.7153 1.0262 32 1 5.6090 0.9982 -0.5159 33 1 4.5561 2.4333 -0.5147 34 1 5.1338 -1.8133 -1.0154 35 1 5.6489 -1.0905 0.5275 36 1 4.6053 -2.5324 0.5247 37 1 0.9012 -2.6352 0.5136 38 1 2.5935 -3.1872 0.5132 39 1 3.7353 -3.7455 -1.5885 40 1 2.9566 -3.4172 -3.1549 41 1 3.4916 -2.0663 -2.1262 42 1 1.0013 -7.0559 -1.9750 43 1 -0.6389 -6.3664 -2.0273 44 1 -0.3667 -7.9255 -3.8948 45 1 -0.4654 -6.2662 -4.5313 46 1 0.8716 -8.6173 -5.8881 47 1 0.7724 -6.9582 -6.5253 48 1 2.0362 -8.9300 -9.3675 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815214899.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:35 Heat of formation + Delta-G solvation = -100.448363 kcal Electronic energy + Delta-G solvation = -27396.705818 eV Core-core repulsion = 23452.236889 eV Total energy + Delta-G solvation = -3944.468929 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.44896 -41.51462 -38.79820 -37.56742 -36.38294 -35.00672 -34.92806 -32.62323 -31.53510 -30.42728 -29.42031 -28.98643 -26.86527 -26.15556 -24.96537 -24.48906 -23.26810 -21.48391 -20.42945 -20.19564 -18.74416 -18.66091 -17.90618 -17.62221 -17.14922 -16.99900 -16.64538 -16.39479 -16.17787 -15.61481 -15.24035 -14.79226 -14.69474 -14.45884 -14.32504 -14.18664 -13.97572 -13.77868 -13.67709 -13.43968 -13.30449 -13.19098 -13.03537 -12.90991 -12.86678 -12.78748 -12.67980 -12.65269 -12.42298 -12.12548 -12.02585 -11.93586 -11.67930 -11.40150 -11.29445 -11.24754 -10.87497 -10.25849 -9.97967 -9.20740 -8.31179 -6.43407 0.89309 1.19631 1.41200 1.45866 1.54246 1.55409 1.66621 1.89308 2.35374 3.02748 3.08258 3.52868 3.64790 3.73759 3.92713 3.96310 3.98668 4.12081 4.13385 4.32440 4.38070 4.40963 4.41788 4.45657 4.51964 4.54008 4.63490 4.68162 4.69473 4.72099 4.80028 4.86615 4.89145 4.89747 5.01200 5.08641 5.14298 5.18489 5.22821 5.29889 5.36510 5.49005 5.55189 5.77776 5.96101 6.17386 6.50947 6.74737 6.79130 6.80853 7.28058 8.80824 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.014070 B = 0.002436 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.616112 B =11489.152891 C =12763.076052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.070 3.930 3 N -0.336 5.336 4 N -0.381 5.381 5 C 0.092 3.908 6 C 0.096 3.904 7 C -0.100 4.100 8 C -0.251 4.251 9 C -0.010 4.010 10 C -0.070 4.070 11 H 0.115 0.885 12 C -0.141 4.141 13 C 0.465 3.535 14 O -0.535 6.535 15 O -0.358 6.358 16 C 0.077 3.923 17 C 0.053 3.947 18 O -0.407 6.407 19 C 0.208 3.792 20 C -0.549 4.549 21 H 0.061 0.939 22 C 0.007 3.993 23 N -0.930 5.930 24 Si 0.982 3.018 25 H -0.265 1.265 26 H -0.275 1.275 27 H -0.265 1.265 28 H 0.086 0.914 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.110 0.890 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.066 0.934 40 H 0.055 0.945 41 H 0.083 0.917 42 H 0.071 0.929 43 H 0.108 0.892 44 H 0.080 0.920 45 H 0.055 0.945 46 H -0.009 1.009 47 H -0.012 1.012 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.145 18.493 19.112 26.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.095 4.095 3 N -0.159 5.159 4 N -0.163 5.163 5 C -0.048 4.048 6 C -0.033 4.033 7 C -0.157 4.157 8 C -0.262 4.262 9 C -0.049 4.049 10 C -0.089 4.089 11 H 0.132 0.868 12 C -0.198 4.198 13 C 0.310 3.690 14 O -0.425 6.425 15 O -0.274 6.274 16 C 0.004 3.996 17 C -0.023 4.023 18 O -0.327 6.327 19 C 0.133 3.867 20 C -0.587 4.587 21 H 0.080 0.920 22 C -0.192 4.192 23 N -0.569 5.569 24 Si 0.805 3.195 25 H -0.190 1.190 26 H -0.200 1.200 27 H -0.189 1.189 28 H 0.104 0.896 29 H 0.093 0.907 30 H 0.103 0.897 31 H 0.104 0.896 32 H 0.128 0.872 33 H 0.108 0.892 34 H 0.111 0.889 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.085 0.915 40 H 0.074 0.926 41 H 0.101 0.899 42 H 0.089 0.911 43 H 0.126 0.874 44 H 0.098 0.902 45 H 0.073 0.927 46 H 0.009 0.991 47 H 0.006 0.994 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.355 19.670 19.316 27.772 hybrid contribution 0.015 -1.196 -0.634 1.354 sum 3.370 18.474 18.683 26.490 Atomic orbital electron populations 1.20276 0.85562 1.03797 1.03729 1.22617 0.97881 0.90311 0.98726 1.77246 0.87482 1.23482 1.27667 1.48619 1.05683 1.04774 1.57188 1.22140 0.83269 0.94918 1.04461 1.21289 0.97615 0.84692 0.99656 1.20752 0.92211 0.98197 1.04590 1.19595 0.91755 0.95448 1.19402 1.19581 1.02414 0.90187 0.92701 1.21127 0.99432 0.88102 1.00259 0.86753 1.21861 0.94073 1.03455 1.00419 1.24339 0.74274 0.89406 0.81027 1.90617 1.49974 1.68235 1.33639 1.86608 1.74545 1.31146 1.35104 1.23168 0.99858 0.80056 0.96543 1.22644 0.87158 1.00052 0.92496 1.87859 1.28401 1.86027 1.30449 1.19863 0.97093 0.91460 0.78268 1.21354 0.92891 1.44519 0.99944 0.92049 1.25953 1.02674 0.94125 0.96443 1.70055 1.32326 1.43853 1.10665 0.85247 0.77815 0.79131 0.77318 1.19008 1.20023 1.18942 0.89586 0.90668 0.89692 0.89626 0.87152 0.89199 0.88855 0.89134 0.89107 0.90525 0.90524 0.91543 0.92627 0.89864 0.91058 0.87443 0.90166 0.92684 0.99092 0.99396 0.92019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.22 10.12 71.24 0.72 -0.50 16 2 C 0.07 1.51 7.22 43.10 0.31 1.83 16 3 N -0.34 -7.96 12.58 -47.38 -0.60 -8.55 16 4 N -0.38 -7.05 4.01 -356.03 -1.43 -8.48 16 5 C 0.09 0.88 11.09 127.77 1.42 2.30 16 6 C 0.10 1.67 5.99 41.40 0.25 1.92 16 7 C -0.10 -1.09 8.62 71.24 0.61 -0.47 16 8 C -0.25 -5.02 4.81 -20.14 -0.10 -5.11 16 9 C -0.01 -0.20 3.98 29.85 0.12 -0.09 16 10 C -0.07 -1.54 2.82 -11.54 -0.03 -1.57 16 11 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 12 C -0.14 -2.98 7.81 71.98 0.56 -2.42 16 13 C 0.46 13.25 7.26 71.23 0.52 13.77 16 14 O -0.53 -16.86 15.67 21.94 0.34 -16.52 16 15 O -0.36 -11.76 10.09 -48.71 -0.49 -12.26 16 16 C 0.08 2.40 5.85 71.98 0.42 2.82 16 17 C 0.05 1.94 6.33 71.98 0.46 2.39 16 18 O -0.41 -19.96 10.30 -145.57 -1.50 -21.46 16 19 C 0.21 11.64 5.69 71.24 0.41 12.05 16 20 C -0.55 -32.69 9.43 25.60 0.24 -32.45 16 21 H 0.06 3.61 7.81 -2.91 -0.02 3.59 16 22 C 0.01 0.38 5.46 84.66 0.46 0.84 16 23 N -0.93 -55.57 13.29 21.45 0.28 -55.29 16 24 Si 0.98 43.99 29.54 68.60 2.03 46.02 16 25 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 26 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 27 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 28 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.08 1.23 7.92 -2.39 -0.02 1.21 16 31 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.11 0.51 7.68 -2.39 -0.02 0.49 16 33 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.09 0.92 6.82 -2.39 -0.02 0.91 16 35 H 0.09 0.60 7.74 -2.39 -0.02 0.58 16 36 H 0.09 0.99 7.14 -2.38 -0.02 0.97 16 37 H 0.08 1.55 7.73 -2.38 -0.02 1.53 16 38 H 0.08 1.49 7.14 -2.39 -0.02 1.48 16 39 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.05 1.41 8.11 -2.38 -0.02 1.39 16 41 H 0.08 1.51 5.33 -2.39 -0.01 1.50 16 42 H 0.07 2.28 8.13 -2.39 -0.02 2.26 16 43 H 0.11 2.68 8.13 -2.39 -0.02 2.66 16 44 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 45 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 46 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 47 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 48 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 Total: -1.00 -76.18 398.68 5.94 -70.23 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: 0.94 Total: 10.99 kcal Atomic # 6 Polarization: -11.05 SS G_CDS: 6.37 Total: -4.69 kcal Atomic # 7 Polarization: -70.58 SS G_CDS: -1.74 Total: -72.32 kcal Atomic # 8 Polarization: -48.59 SS G_CDS: -1.65 Total: -50.23 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -76.18 5.94 -70.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815214899.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.214 kcal (2) G-P(sol) polarization free energy of solvation -76.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds