Wall clock time and date at job start Tue Mar 31 2020 15:08:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.50695 * 109.47500 * 2 1
4 4 C 1.38125 * 126.29365 * 274.46643 * 3 2 1
5 5 C 1.47290 * 126.43199 * 0.04036 * 4 3 2
6 6 O 1.21524 * 119.99394 * 0.29936 * 5 4 3
7 7 O 1.34747 * 119.99980 * 180.30880 * 5 4 3
8 8 C 1.45207 * 116.99658 * 179.97438 * 7 5 4
9 9 C 1.52999 * 109.47146 * 179.97438 * 8 7 5
10 10 O 1.42908 * 109.47093 * 64.99900 * 9 8 7
11 11 C 1.42892 * 114.00087 * 179.97438 * 10 9 8
12 12 C 1.50702 * 109.47314 * 179.97438 * 11 10 9
13 13 H 1.08002 * 119.99742 * 0.02562 * 12 11 10
14 14 C 1.37878 * 120.00014 * 180.02562 * 12 11 10
15 15 N 1.31517 * 119.99877 * 180.02562 * 14 12 11
16 16 Si 1.86793 * 120.00171 * 359.97438 * 14 12 11
17 17 H 1.48503 * 109.47349 * 90.00170 * 16 14 12
18 18 H 1.48504 * 109.47364 * 210.00265 * 16 14 12
19 19 H 1.48504 * 109.47310 * 330.00177 * 16 14 12
20 20 C 1.41348 * 107.14685 * 180.27582 * 4 3 2
21 21 N 1.30432 * 108.01021 * 359.76208 * 20 4 3
22 22 N 1.34219 * 126.29838 * 94.34025 * 3 2 1
23 23 C 1.46504 * 125.74272 * 359.97438 * 22 3 2
24 24 C 1.53002 * 109.46755 * 89.88864 * 23 22 3
25 25 C 1.53000 * 109.46838 * 185.50541 * 24 23 22
26 26 C 1.52995 * 109.46888 * 65.50637 * 24 23 22
27 27 H 1.08999 * 109.46830 * 64.62939 * 1 2 3
28 28 H 1.08993 * 109.47467 * 184.63163 * 1 2 3
29 29 H 1.09003 * 109.46767 * 304.63698 * 1 2 3
30 30 H 1.09000 * 109.46882 * 239.99970 * 2 1 3
31 31 H 1.08996 * 109.46730 * 120.00238 * 2 1 3
32 32 H 1.09006 * 109.46945 * 299.99412 * 8 7 5
33 33 H 1.08995 * 109.47086 * 59.99658 * 8 7 5
34 34 H 1.09000 * 109.47487 * 184.99794 * 9 8 7
35 35 H 1.08998 * 109.47466 * 305.00293 * 9 8 7
36 36 H 1.08999 * 109.47108 * 300.00341 * 11 10 9
37 37 H 1.08998 * 109.47338 * 59.99906 * 11 10 9
38 38 H 0.96994 * 120.00016 * 179.97438 * 15 14 12
39 39 H 1.07995 * 125.99476 * 179.78318 * 20 4 3
40 40 H 1.08999 * 109.47065 * 329.89018 * 23 22 3
41 41 H 1.08997 * 109.47087 * 209.89225 * 23 22 3
42 42 H 1.09003 * 109.47380 * 305.50439 * 24 23 22
43 43 H 1.09003 * 109.47052 * 300.00099 * 25 24 23
44 44 H 1.08996 * 109.47383 * 60.00157 * 25 24 23
45 45 H 1.09001 * 109.46891 * 179.97438 * 25 24 23
46 46 H 1.08996 * 109.47126 * 295.64872 * 26 24 23
47 47 H 1.08999 * 109.47392 * 55.65560 * 26 24 23
48 48 H 1.09003 * 109.46801 * 175.65205 * 26 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0324 1.4207 0.0000
4 6 2.2233 2.2205 -1.1099
5 6 1.9734 1.8449 -2.5120
6 8 1.5527 0.7364 -2.7783
7 8 2.2116 2.7304 -3.4994
8 6 1.9431 2.2915 -4.8573
9 6 2.2702 3.4236 -5.8332
10 8 3.6726 3.6959 -5.7941
11 6 4.0861 4.7428 -6.6744
12 6 5.5745 4.9442 -6.5512
13 1 6.1474 4.3334 -5.8691
14 6 6.2048 5.9081 -7.3092
15 7 7.5038 6.0835 -7.2020
16 14 5.2141 6.9639 -8.4893
17 1 4.7398 8.1821 -7.7849
18 1 6.0687 7.3576 -9.6382
19 1 4.0459 6.1914 -8.9833
20 6 2.7086 3.4651 -0.6482
21 7 2.7943 3.4074 0.6520
22 7 2.3745 2.1425 1.0786
23 6 2.3229 1.6817 2.4683
24 6 3.6599 1.0387 2.8424
25 6 3.5610 0.4357 4.2451
26 6 4.7605 2.1012 2.8204
27 1 -0.3633 0.4403 -0.9286
28 1 -0.3634 -1.0242 0.0830
29 1 -0.3633 0.5841 0.8456
30 1 1.8933 -0.5138 -0.8900
31 1 1.8933 -0.5139 0.8899
32 1 2.5608 1.4233 -5.0873
33 1 0.8907 2.0240 -4.9513
34 1 1.9858 3.1267 -6.8426
35 1 1.7182 4.3194 -5.5488
36 1 3.8393 4.4727 -7.7012
37 1 3.5716 5.6660 -6.4079
38 1 7.9473 6.7613 -7.7355
39 1 2.9634 4.3150 -1.2640
40 1 1.5237 0.9487 2.5786
41 1 2.1310 2.5298 3.1255
42 1 3.8987 0.2533 2.1252
43 1 3.3223 1.2211 4.9622
44 1 2.7769 -0.3212 4.2607
45 1 4.5134 -0.0227 4.5114
46 1 4.8836 2.4759 1.8043
47 1 4.4847 2.9239 3.4801
48 1 5.6975 1.6608 3.1612
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000815223125.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 15:08:28
Heat of formation + Delta-G solvation = -76.726041 kcal
Electronic energy + Delta-G solvation = -27461.807670 eV
Core-core repulsion = 23518.367418 eV
Total energy + Delta-G solvation = -3943.440252 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 324.188 amu
Computer time = 0.70 seconds
Orbital eigenvalues (eV)
-41.75861 -39.77019 -37.14422 -36.84297 -35.95748 -34.27979 -32.67216 -32.23362
-30.40104 -29.44120 -27.61799 -27.56422 -26.91234 -24.42868 -23.11122 -22.04273
-21.81134 -21.31924 -20.61984 -19.45160 -17.87547 -16.96502 -16.54416 -16.40948
-15.96992 -15.77369 -15.59711 -15.17450 -14.80649 -14.61440 -14.37770 -14.34905
-13.92039 -13.53304 -13.42434 -13.15306 -12.90279 -12.76756 -12.64410 -12.50488
-12.42518 -12.36606 -11.90042 -11.74515 -11.64937 -11.48808 -11.38754 -11.25315
-11.12395 -10.88587 -10.80906 -10.59886 -10.35726 -10.17322 -9.84920 -9.56100
-9.17545 -8.87186 -8.82106 -8.47652 -6.09667 -4.08730 1.24294 2.02209
2.07003 2.98406 3.26145 3.27359 3.32972 3.33883 4.08256 4.15144
4.23912 4.36775 4.48680 4.54102 4.57504 4.66552 4.87486 4.95160
4.95797 5.02240 5.12535 5.16933 5.21421 5.24327 5.25554 5.34268
5.44421 5.45324 5.46062 5.50266 5.60109 5.63376 5.76123 5.77724
5.82576 5.89468 5.94169 5.99125 6.07386 6.35107 6.58921 6.60561
6.71590 6.99841 7.42256 7.60202 7.98476 8.06072 8.66580 9.02363
9.49227 11.03408
Molecular weight = 324.19amu
Principal moments of inertia in cm(-1)
A = 0.015499 B = 0.002525 C = 0.002260
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1806.174687 B =11085.697741 C =12389.009764
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.141 4.141
2 C -0.069 4.069
3 C 0.166 3.834
4 C -0.280 4.280
5 C 0.544 3.456
6 O -0.527 6.527
7 O -0.337 6.337
8 C 0.078 3.922
9 C 0.057 3.943
10 O -0.374 6.374
11 C 0.168 3.832
12 C -0.518 4.518
13 H 0.083 0.917
14 C 0.072 3.928
15 N -0.895 5.895
16 Si 0.876 3.124
17 H -0.273 1.273
18 H -0.282 1.282
19 H -0.266 1.266
20 C 0.108 3.892
21 N -0.296 5.296
22 N -0.355 5.355
23 C 0.131 3.869
24 C -0.115 4.115
25 C -0.145 4.145
26 C -0.147 4.147
27 H 0.067 0.933
28 H 0.067 0.933
29 H 0.049 0.951
30 H 0.109 0.891
31 H 0.075 0.925
32 H 0.078 0.922
33 H 0.078 0.922
34 H 0.063 0.937
35 H 0.051 0.949
36 H 0.003 0.997
37 H 0.001 0.999
38 H 0.266 0.734
39 H 0.200 0.800
40 H 0.095 0.905
41 H 0.101 0.899
42 H 0.076 0.924
43 H 0.060 0.940
44 H 0.058 0.942
45 H 0.064 0.936
46 H 0.062 0.938
47 H 0.058 0.942
48 H 0.056 0.944
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.388 -12.329 21.489 29.164
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C -0.108 4.108
3 C 0.033 3.967
4 C -0.292 4.292
5 C 0.390 3.610
6 O -0.418 6.418
7 O -0.253 6.253
8 C 0.004 3.996
9 C -0.020 4.020
10 O -0.294 6.294
11 C 0.093 3.907
12 C -0.556 4.556
13 H 0.101 0.899
14 C -0.130 4.130
15 N -0.534 5.534
16 Si 0.703 3.297
17 H -0.199 1.199
18 H -0.208 1.208
19 H -0.191 1.191
20 C -0.080 4.080
21 N -0.114 5.114
22 N -0.132 5.132
23 C 0.010 3.990
24 C -0.134 4.134
25 C -0.203 4.203
26 C -0.204 4.204
27 H 0.086 0.914
28 H 0.086 0.914
29 H 0.069 0.931
30 H 0.127 0.873
31 H 0.094 0.906
32 H 0.096 0.904
33 H 0.096 0.904
34 H 0.081 0.919
35 H 0.069 0.931
36 H 0.021 0.979
37 H 0.018 0.982
38 H 0.076 0.924
39 H 0.217 0.783
40 H 0.113 0.887
41 H 0.119 0.881
42 H 0.095 0.905
43 H 0.079 0.921
44 H 0.077 0.923
45 H 0.083 0.917
46 H 0.081 0.919
47 H 0.077 0.923
48 H 0.075 0.925
Dipole moment (debyes) X Y Z Total
from point charges -14.896 -11.994 22.645 29.641
hybrid contribution -0.728 0.391 -1.725 1.913
sum -15.624 -11.604 20.920 28.573
Atomic orbital electron populations
1.21647 0.93270 1.02343 1.02593 1.20456 0.97234 0.88388 1.04763
1.21446 0.94146 0.94760 0.86378 1.19066 1.22371 0.97205 0.90591
1.19904 0.73646 0.82261 0.85162 1.90763 1.44327 1.22105 1.84649
1.86629 1.78615 1.43588 1.16447 1.23128 1.00701 0.98292 0.77489
1.22406 0.86630 0.96687 0.96305 1.87986 1.19173 1.57020 1.65186
1.20627 0.96786 0.85079 0.88214 1.20886 0.89933 1.19727 1.25068
0.89911 1.24771 0.94888 0.96702 0.96644 1.69876 1.08456 1.33998
1.41034 0.86848 0.80467 0.81216 0.81185 1.19893 1.20807 1.19111
1.24313 0.94459 0.97670 0.91527 1.77288 1.22585 0.98223 1.13320
1.48496 1.48725 1.09900 1.06126 1.21987 0.98832 1.00463 0.77690
1.21566 0.94676 0.98721 0.98426 1.21782 1.02550 1.00800 0.95133
1.21822 0.97490 0.98016 1.03077 0.91428 0.91446 0.93146 0.87274
0.90625 0.90400 0.90395 0.91900 0.93059 0.97892 0.98177 0.92370
0.78286 0.88681 0.88112 0.90510 0.92119 0.92320 0.91715 0.91863
0.92283 0.92455
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.11 9.90 37.16 0.37 -0.75 16
2 C -0.07 -0.62 5.34 -27.88 -0.15 -0.77 16
3 C 0.17 1.91 6.26 -81.59 -0.51 1.40 16
4 C -0.28 -3.94 6.13 -105.08 -0.64 -4.58 16
5 C 0.54 8.63 7.95 34.41 0.27 8.90 16
6 O -0.53 -8.61 14.57 -19.29 -0.28 -8.89 16
7 O -0.34 -5.75 10.04 -43.40 -0.44 -6.19 16
8 C 0.08 1.21 5.85 37.16 0.22 1.43 16
9 C 0.06 1.00 6.33 37.16 0.24 1.23 16
10 O -0.37 -8.83 10.30 -38.79 -0.40 -9.23 16
11 C 0.17 4.29 4.76 36.01 0.17 4.46 16
12 C -0.52 -15.57 9.99 -34.44 -0.34 -15.91 16
13 H 0.08 2.73 8.06 -52.49 -0.42 2.31 16
14 C 0.07 2.12 5.47 -17.82 -0.10 2.03 16
15 N -0.90 -27.83 13.96 55.43 0.77 -27.06 16
16 Si 0.88 21.44 27.47 -169.99 -4.67 16.77 16
17 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16
18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16
19 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16
20 C 0.11 1.48 11.87 -16.96 -0.20 1.28 16
21 N -0.30 -3.86 11.69 30.87 0.36 -3.50 16
22 N -0.35 -3.77 3.22 -56.59 -0.18 -3.95 16
23 C 0.13 0.90 5.38 -4.04 -0.02 0.88 16
24 C -0.11 -0.75 3.12 -90.62 -0.28 -1.03 16
25 C -0.14 -0.63 9.19 37.16 0.34 -0.29 16
26 C -0.15 -1.22 8.96 37.16 0.33 -0.89 16
27 H 0.07 0.68 7.97 -51.93 -0.41 0.26 16
28 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16
29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16
30 H 0.11 1.16 6.76 -51.93 -0.35 0.81 16
31 H 0.08 0.48 7.50 -51.93 -0.39 0.09 16
32 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16
33 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16
34 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16
35 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16
36 H 0.00 0.08 7.20 -51.93 -0.37 -0.29 16
37 H 0.00 0.01 7.57 -51.93 -0.39 -0.38 16
38 H 0.27 7.65 8.31 -40.82 -0.34 7.32 16
39 H 0.20 2.54 8.06 -52.49 -0.42 2.12 16
40 H 0.10 0.44 7.53 -51.93 -0.39 0.05 16
41 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16
42 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16
43 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16
44 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16
45 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16
46 H 0.06 0.70 7.21 -51.93 -0.37 0.33 16
47 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16
48 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16
LS Contribution 400.51 15.07 6.04 6.04
Total: -1.00 -34.89 400.51 -7.30 -42.20
By element:
Atomic # 1 Polarization: 4.62 SS G_CDS: -8.19 Total: -3.57 kcal
Atomic # 6 Polarization: -2.30 SS G_CDS: -0.31 Total: -2.61 kcal
Atomic # 7 Polarization: -35.46 SS G_CDS: 0.95 Total: -34.51 kcal
Atomic # 8 Polarization: -23.19 SS G_CDS: -1.12 Total: -24.31 kcal
Atomic # 14 Polarization: 21.44 SS G_CDS: -4.67 Total: 16.77 kcal
Total LS contribution 6.04 Total: 6.04 kcal
Total: -34.89 -7.30 -42.20 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000815223125.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -34.530 kcal
(2) G-P(sol) polarization free energy of solvation -34.893 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.423 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.303 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.196 kcal
(6) G-S(sol) free energy of system = (1) + (5) -76.726 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.70 seconds