Wall clock time and date at job start Tue Mar 31 2020 15:08:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.50695 * 109.47500 * 2 1
4 4 C 1.38125 * 126.29365 * 274.46643 * 3 2 1
5 5 C 1.47290 * 126.43199 * 0.04036 * 4 3 2
6 6 O 1.21524 * 119.99394 * 0.29936 * 5 4 3
7 7 O 1.34747 * 119.99980 * 180.30880 * 5 4 3
8 8 C 1.45207 * 116.99658 * 179.97438 * 7 5 4
9 9 C 1.52999 * 109.47146 * 179.97438 * 8 7 5
10 10 O 1.42908 * 109.47093 * 64.99900 * 9 8 7
11 11 C 1.42892 * 114.00087 * 179.97438 * 10 9 8
12 12 C 1.50702 * 109.47314 * 179.97438 * 11 10 9
13 13 H 1.08002 * 119.99742 * 0.02562 * 12 11 10
14 14 C 1.37878 * 120.00014 * 180.02562 * 12 11 10
15 15 N 1.31517 * 119.99877 * 180.02562 * 14 12 11
16 16 Si 1.86793 * 120.00171 * 359.97438 * 14 12 11
17 17 H 1.48503 * 109.47349 * 90.00170 * 16 14 12
18 18 H 1.48504 * 109.47364 * 210.00265 * 16 14 12
19 19 H 1.48504 * 109.47310 * 330.00177 * 16 14 12
20 20 C 1.41348 * 107.14685 * 180.27582 * 4 3 2
21 21 N 1.30432 * 108.01021 * 359.76208 * 20 4 3
22 22 N 1.34219 * 126.29838 * 94.34025 * 3 2 1
23 23 C 1.46504 * 125.74272 * 359.97438 * 22 3 2
24 24 C 1.53002 * 109.46755 * 89.88864 * 23 22 3
25 25 C 1.53000 * 109.46838 * 185.50541 * 24 23 22
26 26 C 1.52995 * 109.46888 * 65.50637 * 24 23 22
27 27 H 1.08999 * 109.46830 * 64.62939 * 1 2 3
28 28 H 1.08993 * 109.47467 * 184.63163 * 1 2 3
29 29 H 1.09003 * 109.46767 * 304.63698 * 1 2 3
30 30 H 1.09000 * 109.46882 * 239.99970 * 2 1 3
31 31 H 1.08996 * 109.46730 * 120.00238 * 2 1 3
32 32 H 1.09006 * 109.46945 * 299.99412 * 8 7 5
33 33 H 1.08995 * 109.47086 * 59.99658 * 8 7 5
34 34 H 1.09000 * 109.47487 * 184.99794 * 9 8 7
35 35 H 1.08998 * 109.47466 * 305.00293 * 9 8 7
36 36 H 1.08999 * 109.47108 * 300.00341 * 11 10 9
37 37 H 1.08998 * 109.47338 * 59.99906 * 11 10 9
38 38 H 0.96994 * 120.00016 * 179.97438 * 15 14 12
39 39 H 1.07995 * 125.99476 * 179.78318 * 20 4 3
40 40 H 1.08999 * 109.47065 * 329.89018 * 23 22 3
41 41 H 1.08997 * 109.47087 * 209.89225 * 23 22 3
42 42 H 1.09003 * 109.47380 * 305.50439 * 24 23 22
43 43 H 1.09003 * 109.47052 * 300.00099 * 25 24 23
44 44 H 1.08996 * 109.47383 * 60.00157 * 25 24 23
45 45 H 1.09001 * 109.46891 * 179.97438 * 25 24 23
46 46 H 1.08996 * 109.47126 * 295.64872 * 26 24 23
47 47 H 1.08999 * 109.47392 * 55.65560 * 26 24 23
48 48 H 1.09003 * 109.46801 * 175.65205 * 26 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0324 1.4207 0.0000
4 6 2.2233 2.2205 -1.1099
5 6 1.9734 1.8449 -2.5120
6 8 1.5527 0.7364 -2.7783
7 8 2.2116 2.7304 -3.4994
8 6 1.9431 2.2915 -4.8573
9 6 2.2702 3.4236 -5.8332
10 8 3.6726 3.6959 -5.7941
11 6 4.0861 4.7428 -6.6744
12 6 5.5745 4.9442 -6.5512
13 1 6.1474 4.3334 -5.8691
14 6 6.2048 5.9081 -7.3092
15 7 7.5038 6.0835 -7.2020
16 14 5.2141 6.9639 -8.4893
17 1 4.7398 8.1821 -7.7849
18 1 6.0687 7.3576 -9.6382
19 1 4.0459 6.1914 -8.9833
20 6 2.7086 3.4651 -0.6482
21 7 2.7943 3.4074 0.6520
22 7 2.3745 2.1425 1.0786
23 6 2.3229 1.6817 2.4683
24 6 3.6599 1.0387 2.8424
25 6 3.5610 0.4357 4.2451
26 6 4.7605 2.1012 2.8204
27 1 -0.3633 0.4403 -0.9286
28 1 -0.3634 -1.0242 0.0830
29 1 -0.3633 0.5841 0.8456
30 1 1.8933 -0.5138 -0.8900
31 1 1.8933 -0.5139 0.8899
32 1 2.5608 1.4233 -5.0873
33 1 0.8907 2.0240 -4.9513
34 1 1.9858 3.1267 -6.8426
35 1 1.7182 4.3194 -5.5488
36 1 3.8393 4.4727 -7.7012
37 1 3.5716 5.6660 -6.4079
38 1 7.9473 6.7613 -7.7355
39 1 2.9634 4.3150 -1.2640
40 1 1.5237 0.9487 2.5786
41 1 2.1310 2.5298 3.1255
42 1 3.8987 0.2533 2.1252
43 1 3.3223 1.2211 4.9622
44 1 2.7769 -0.3212 4.2607
45 1 4.5134 -0.0227 4.5114
46 1 4.8836 2.4759 1.8043
47 1 4.4847 2.9239 3.4801
48 1 5.6975 1.6608 3.1612
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000815223125.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 15:08:27
Heat of formation + Delta-G solvation = -98.340707 kcal
Electronic energy + Delta-G solvation = -27462.744953 eV
Core-core repulsion = 23518.367418 eV
Total energy + Delta-G solvation = -3944.377534 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 324.188 amu
Computer time = 0.76 seconds
Orbital eigenvalues (eV)
-42.70545 -40.98840 -38.75635 -37.50559 -37.28655 -35.07375 -34.87659 -33.07720
-31.84109 -30.48121 -29.51836 -28.12041 -27.67473 -25.28458 -24.20321 -23.94203
-23.19477 -22.17595 -21.44525 -20.32712 -19.08838 -18.94817 -17.86129 -17.73498
-17.04137 -16.86394 -16.53397 -16.36505 -16.26881 -16.16188 -15.41477 -15.07370
-14.94425 -14.71405 -14.55595 -14.28054 -14.15909 -13.92468 -13.79140 -13.35818
-13.31158 -13.19604 -12.98783 -12.93617 -12.72330 -12.58319 -12.37581 -12.26429
-12.19099 -11.94988 -11.85865 -11.82690 -11.68428 -11.62198 -11.37732 -11.32382
-10.92457 -10.43885 -10.38520 -9.81638 -8.36485 -6.44848 0.26182 0.96759
1.21895 1.34650 1.38384 1.49036 1.85272 2.13523 2.30655 2.96064
2.99062 3.36539 3.40512 3.68020 3.78463 3.82229 3.96479 3.99200
4.05154 4.16670 4.28608 4.29782 4.37934 4.39976 4.44562 4.51937
4.55537 4.59707 4.65203 4.67606 4.76472 4.78400 4.89221 4.96544
4.99762 5.01571 5.11122 5.15104 5.29277 5.30383 5.30650 5.37395
5.43657 5.50801 5.82032 5.92571 6.43516 6.59123 6.72234 6.84718
7.19363 8.80951
Molecular weight = 324.19amu
Principal moments of inertia in cm(-1)
A = 0.015499 B = 0.002525 C = 0.002260
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1806.174687 B =11085.697741 C =12389.009764
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.136 4.136
2 C -0.068 4.068
3 C 0.177 3.823
4 C -0.312 4.312
5 C 0.542 3.458
6 O -0.537 6.537
7 O -0.357 6.357
8 C 0.077 3.923
9 C 0.050 3.950
10 O -0.407 6.407
11 C 0.178 3.822
12 C -0.547 4.547
13 H 0.026 0.974
14 C 0.010 3.990
15 N -0.944 5.944
16 Si 0.959 3.041
17 H -0.259 1.259
18 H -0.274 1.274
19 H -0.241 1.241
20 C 0.095 3.905
21 N -0.311 5.311
22 N -0.344 5.344
23 C 0.120 3.880
24 C -0.109 4.109
25 C -0.139 4.139
26 C -0.147 4.147
27 H 0.041 0.959
28 H 0.088 0.912
29 H 0.063 0.937
30 H 0.091 0.909
31 H 0.109 0.891
32 H 0.067 0.933
33 H 0.111 0.889
34 H 0.092 0.908
35 H 0.066 0.934
36 H 0.019 0.981
37 H 0.015 0.985
38 H 0.273 0.727
39 H 0.197 0.803
40 H 0.129 0.871
41 H 0.109 0.891
42 H 0.071 0.929
43 H 0.066 0.934
44 H 0.077 0.923
45 H 0.063 0.937
46 H 0.029 0.971
47 H 0.061 0.939
48 H 0.061 0.939
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.251 -12.846 22.177 31.464
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.193 4.193
2 C -0.106 4.106
3 C 0.042 3.958
4 C -0.325 4.325
5 C 0.389 3.611
6 O -0.430 6.430
7 O -0.273 6.273
8 C 0.004 3.996
9 C -0.026 4.026
10 O -0.327 6.327
11 C 0.103 3.897
12 C -0.585 4.585
13 H 0.044 0.956
14 C -0.187 4.187
15 N -0.583 5.583
16 Si 0.779 3.221
17 H -0.184 1.184
18 H -0.199 1.199
19 H -0.164 1.164
20 C -0.092 4.092
21 N -0.129 5.129
22 N -0.122 5.122
23 C 0.001 3.999
24 C -0.128 4.128
25 C -0.197 4.197
26 C -0.204 4.204
27 H 0.060 0.940
28 H 0.107 0.893
29 H 0.082 0.918
30 H 0.109 0.891
31 H 0.127 0.873
32 H 0.086 0.914
33 H 0.129 0.871
34 H 0.110 0.890
35 H 0.084 0.916
36 H 0.037 0.963
37 H 0.032 0.968
38 H 0.082 0.918
39 H 0.213 0.787
40 H 0.147 0.853
41 H 0.127 0.873
42 H 0.089 0.911
43 H 0.085 0.915
44 H 0.096 0.904
45 H 0.082 0.918
46 H 0.048 0.952
47 H 0.080 0.920
48 H 0.080 0.920
Dipole moment (debyes) X Y Z Total
from point charges -17.771 -12.528 23.369 31.919
hybrid contribution 0.236 0.453 -1.775 1.847
sum -17.535 -12.075 21.594 30.325
Atomic orbital electron populations
1.21624 0.92145 1.03747 1.01829 1.20572 0.98028 0.86531 1.05513
1.21836 0.92598 0.95549 0.85769 1.19200 1.24617 0.98179 0.90508
1.20170 0.73349 0.82022 0.85544 1.90738 1.45087 1.22288 1.84854
1.86621 1.79079 1.44427 1.17209 1.23214 1.02379 0.97201 0.76810
1.22769 0.83380 0.97983 0.98483 1.87932 1.23232 1.56482 1.65050
1.20358 0.93702 0.86345 0.89317 1.21179 0.92660 1.19849 1.24811
0.95578 1.25901 0.96169 0.98037 0.98635 1.70044 1.10850 1.35054
1.42390 0.85565 0.79253 0.79109 0.78136 1.18402 1.19920 1.16377
1.24332 0.95040 0.97882 0.91983 1.77222 1.22899 0.99896 1.12902
1.48820 1.47123 1.08882 1.07352 1.22453 1.00123 1.01680 0.75605
1.21532 0.93588 0.97794 0.99914 1.21748 1.03281 1.01317 0.93327
1.21818 0.98794 0.98868 1.00959 0.93992 0.89282 0.91752 0.89088
0.87258 0.91429 0.87081 0.89012 0.91626 0.96316 0.96768 0.91804
0.78655 0.85346 0.87284 0.91095 0.91463 0.90449 0.91767 0.95195
0.91997 0.92024
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.85 9.90 71.98 0.71 -1.14 16
2 C -0.07 -1.09 5.34 29.85 0.16 -0.93 16
3 C 0.18 3.98 6.26 42.17 0.26 4.25 16
4 C -0.31 -9.09 6.13 -20.16 -0.12 -9.21 16
5 C 0.54 17.72 7.95 70.20 0.56 18.27 16
6 O -0.54 -17.80 14.57 19.76 0.29 -17.51 16
7 O -0.36 -12.53 10.04 -53.92 -0.54 -13.07 16
8 C 0.08 2.39 5.85 71.98 0.42 2.81 16
9 C 0.05 1.69 6.33 71.98 0.46 2.14 16
10 O -0.41 -19.42 10.30 -145.58 -1.50 -20.92 16
11 C 0.18 9.02 4.76 71.24 0.34 9.36 16
12 C -0.55 -34.08 9.99 25.60 0.26 -33.82 16
13 H 0.03 1.84 8.06 -2.91 -0.02 1.82 16
14 C 0.01 0.62 5.47 84.65 0.46 1.08 16
15 N -0.94 -60.45 13.96 21.45 0.30 -60.15 16
16 Si 0.96 43.55 27.47 68.60 1.88 45.44 16
17 H -0.26 -11.18 7.11 99.48 0.71 -10.48 16
18 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16
19 H -0.24 -9.88 6.54 99.48 0.65 -9.23 16
20 C 0.10 2.76 11.87 85.67 1.02 3.78 16
21 N -0.31 -8.30 11.69 -56.25 -0.66 -8.96 16
22 N -0.34 -7.03 3.22 -332.96 -1.07 -8.10 16
23 C 0.12 1.36 5.38 86.38 0.47 1.83 16
24 C -0.11 -1.22 3.12 -10.79 -0.03 -1.25 16
25 C -0.14 -0.81 9.19 71.98 0.66 -0.14 16
26 C -0.15 -2.41 8.96 71.98 0.65 -1.77 16
27 H 0.04 0.80 7.97 -2.39 -0.02 0.78 16
28 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16
29 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16
30 H 0.09 1.87 6.76 -2.39 -0.02 1.86 16
31 H 0.11 1.02 7.50 -2.39 -0.02 1.00 16
32 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16
33 H 0.11 2.67 8.14 -2.39 -0.02 2.65 16
34 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16
35 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16
36 H 0.02 0.90 7.20 -2.39 -0.02 0.88 16
37 H 0.01 0.69 7.57 -2.39 -0.02 0.67 16
38 H 0.27 15.99 8.31 -92.71 -0.77 15.22 16
39 H 0.20 5.51 8.06 -2.91 -0.02 5.48 16
40 H 0.13 0.65 7.53 -2.39 -0.02 0.63 16
41 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16
42 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16
43 H 0.07 0.33 8.14 -2.39 -0.02 0.31 16
44 H 0.08 0.20 8.14 -2.39 -0.02 0.18 16
45 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16
46 H 0.03 0.68 7.21 -2.39 -0.02 0.67 16
47 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16
48 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16
Total: -1.00 -80.30 400.51 5.83 -74.46
By element:
Atomic # 1 Polarization: 12.69 SS G_CDS: 0.87 Total: 13.56 kcal
Atomic # 6 Polarization: -11.01 SS G_CDS: 6.26 Total: -4.75 kcal
Atomic # 7 Polarization: -75.78 SS G_CDS: -1.43 Total: -77.21 kcal
Atomic # 8 Polarization: -49.75 SS G_CDS: -1.75 Total: -51.50 kcal
Atomic # 14 Polarization: 43.55 SS G_CDS: 1.88 Total: 45.44 kcal
Total: -80.30 5.83 -74.46 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000815223125.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -23.879 kcal
(2) G-P(sol) polarization free energy of solvation -80.295 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.175 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.834 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.461 kcal
(6) G-S(sol) free energy of system = (1) + (5) -98.341 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.76 seconds