Wall clock time and date at job start Tue Mar 31 2020 15:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50703 * 109.46954 * 2 1 4 4 N 1.30838 * 125.89889 * 270.02559 * 3 2 1 5 5 N 1.40080 * 108.20344 * 179.97438 * 4 3 2 6 6 C 1.46501 * 126.03696 * 180.02562 * 5 4 3 7 7 C 1.34951 * 107.92649 * 359.75740 * 5 4 3 8 8 C 1.50700 * 126.12519 * 180.23853 * 7 5 4 9 9 C 1.53001 * 109.46943 * 90.18049 * 8 7 5 10 10 C 1.35306 * 107.74429 * 0.39166 * 7 5 4 11 11 C 1.50706 * 126.04096 * 179.87280 * 10 7 5 12 12 C 1.50702 * 109.46975 * 269.71660 * 11 10 7 13 13 O 1.20827 * 119.99777 * 359.97438 * 12 11 10 14 14 O 1.34232 * 119.99854 * 180.02562 * 12 11 10 15 15 C 1.45202 * 116.99803 * 179.97438 * 14 12 11 16 16 C 1.53003 * 109.46710 * 179.97438 * 15 14 12 17 17 O 1.42896 * 109.46772 * 65.00571 * 16 15 14 18 18 C 1.42901 * 113.99758 * 180.02562 * 17 16 15 19 19 C 1.50696 * 109.47423 * 179.97438 * 18 17 16 20 20 H 1.08002 * 119.99818 * 359.97438 * 19 18 17 21 21 C 1.37875 * 120.00392 * 179.97438 * 19 18 17 22 22 N 1.31515 * 119.99916 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00000 * 179.97438 * 21 19 18 24 24 H 1.48492 * 109.47321 * 90.00201 * 23 21 19 25 25 H 1.48506 * 109.47069 * 209.99864 * 23 21 19 26 26 H 1.48496 * 109.47199 * 329.99644 * 23 21 19 27 27 H 1.08994 * 109.47640 * 59.99645 * 1 2 3 28 28 H 1.08997 * 109.46720 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46733 * 299.99215 * 1 2 3 30 30 H 1.08996 * 109.46807 * 240.00383 * 2 1 3 31 31 H 1.08994 * 109.47640 * 120.00355 * 2 1 3 32 32 H 1.09009 * 109.46978 * 90.02635 * 6 5 4 33 33 H 1.09000 * 109.47667 * 210.02168 * 6 5 4 34 34 H 1.09004 * 109.47353 * 330.02766 * 6 5 4 35 35 H 1.09000 * 109.47109 * 210.18002 * 8 7 5 36 36 H 1.08998 * 109.47444 * 330.17684 * 8 7 5 37 37 H 1.09001 * 109.46670 * 179.97438 * 9 8 7 38 38 H 1.09000 * 109.47368 * 299.99390 * 9 8 7 39 39 H 1.09000 * 109.46845 * 60.00147 * 9 8 7 40 40 H 1.08994 * 109.46790 * 29.71060 * 11 10 7 41 41 H 1.08997 * 109.47305 * 149.71501 * 11 10 7 42 42 H 1.08992 * 109.46908 * 300.00079 * 15 14 12 43 43 H 1.09001 * 109.46731 * 60.00122 * 15 14 12 44 44 H 1.08998 * 109.46692 * 185.00274 * 16 15 14 45 45 H 1.09000 * 109.47218 * 304.99787 * 16 15 14 46 46 H 1.09008 * 109.46906 * 299.99675 * 18 17 16 47 47 H 1.09004 * 109.47516 * 59.99215 * 18 17 16 48 48 H 0.97003 * 119.99981 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2876 2.1443 -1.0599 5 7 2.7320 3.4027 -0.6341 6 6 3.1246 4.5167 -1.5007 7 6 2.7289 3.4095 0.7154 8 6 3.1289 4.5630 1.5989 9 6 1.9018 5.4272 1.8961 10 6 2.3056 2.1941 1.1330 11 6 2.1499 1.7535 2.5658 12 6 3.4378 1.1338 3.0436 13 8 4.3848 1.0573 2.2971 14 8 3.5325 0.6659 4.2981 15 6 4.8029 0.0816 4.6896 16 6 4.7204 -0.3916 6.1422 17 8 3.7689 -1.4528 6.2441 18 6 3.6142 -1.9696 7.5674 19 6 2.5922 -3.0771 7.5579 20 1 2.1089 -3.3579 6.6338 21 6 2.2742 -3.7318 8.7289 22 7 2.8632 -3.3902 9.8541 23 14 1.0069 -5.1041 8.7172 24 1 1.6845 -6.4016 8.4672 25 1 0.3164 -5.1515 10.0311 26 1 0.0123 -4.8502 7.6442 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 2.2530 5.1353 -1.7146 33 1 3.8825 5.1181 -0.9986 34 1 3.5305 4.1257 -2.4338 35 1 3.5384 4.1798 2.5336 36 1 3.8830 5.1648 1.0917 37 1 2.1911 6.2612 2.5355 38 1 1.4924 5.8105 0.9614 39 1 1.1478 4.8253 2.4034 40 1 1.9094 2.6162 3.1870 41 1 1.3462 1.0204 2.6352 42 1 5.0273 -0.7665 4.0429 43 1 5.5908 0.8289 4.5954 44 1 5.6987 -0.7486 6.4640 45 1 4.4094 0.4377 6.7775 46 1 4.5695 -2.3593 7.9193 47 1 3.2799 -1.1729 8.2319 48 1 2.6392 -3.8506 10.6780 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815237694.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:32 Heat of formation + Delta-G solvation = -79.885676 kcal Electronic energy + Delta-G solvation = -27521.370774 eV Core-core repulsion = 23577.793510 eV Total energy + Delta-G solvation = -3943.577264 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.71193 -40.04399 -37.03256 -35.94546 -35.35141 -34.25007 -32.75899 -32.21892 -31.16212 -29.96344 -28.17389 -26.92118 -26.09717 -24.00644 -23.59424 -22.54108 -22.18517 -21.00294 -19.56108 -19.42866 -17.56540 -16.87213 -16.55489 -16.40754 -15.97320 -15.61028 -15.43437 -14.93083 -14.80580 -14.56491 -14.28014 -14.22466 -13.82099 -13.55660 -13.37973 -13.26545 -13.14341 -12.82520 -12.66884 -12.43241 -12.19521 -12.06915 -11.90100 -11.79256 -11.57337 -11.39637 -11.33648 -11.21578 -10.89721 -10.82815 -10.72774 -10.51564 -10.31151 -10.25451 -10.02259 -9.21747 -9.11468 -8.85978 -8.47170 -8.19629 -6.10844 -4.12333 1.66213 2.27501 2.41142 2.44620 3.15492 3.31319 3.36264 3.41860 4.20270 4.23183 4.33953 4.54521 4.72372 4.74990 4.77699 4.85218 4.89668 4.91988 5.02331 5.05658 5.16799 5.20259 5.25812 5.26398 5.29155 5.38164 5.41699 5.47809 5.51117 5.56847 5.66678 5.79908 5.82964 5.90178 5.95526 5.97060 6.08666 6.10682 6.13899 6.53079 6.72564 6.84116 7.07056 7.41277 7.60497 7.79491 8.01356 8.14081 8.54392 9.00468 9.52417 11.00733 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.016277 B = 0.002461 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.807737 B =11373.693026 C =12249.703647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.048 4.048 3 C 0.101 3.899 4 N -0.297 5.297 5 N -0.374 5.374 6 C 0.103 3.897 7 C 0.107 3.893 8 C -0.065 4.065 9 C -0.147 4.147 10 C -0.223 4.223 11 C -0.034 4.034 12 C 0.457 3.543 13 O -0.509 6.509 14 O -0.343 6.343 15 C 0.075 3.925 16 C 0.062 3.938 17 O -0.390 6.390 18 C 0.194 3.806 19 C -0.514 4.514 20 H 0.067 0.933 21 C 0.056 3.944 22 N -0.899 5.899 23 Si 0.908 3.092 24 H -0.279 1.279 25 H -0.285 1.285 26 H -0.271 1.271 27 H 0.055 0.945 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.076 0.924 37 H 0.066 0.934 38 H 0.053 0.947 39 H 0.064 0.936 40 H 0.108 0.892 41 H 0.114 0.886 42 H 0.075 0.925 43 H 0.075 0.925 44 H 0.061 0.939 45 H 0.049 0.951 46 H 0.006 0.994 47 H 0.007 0.993 48 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.900 19.050 -19.489 27.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.087 4.087 3 C -0.065 4.065 4 N -0.118 5.118 5 N -0.155 5.155 6 C -0.038 4.038 7 C -0.021 4.021 8 C -0.104 4.104 9 C -0.205 4.205 10 C -0.234 4.234 11 C -0.072 4.072 12 C 0.299 3.701 13 O -0.397 6.397 14 O -0.259 6.259 15 C 0.001 3.999 16 C -0.016 4.016 17 O -0.310 6.310 18 C 0.120 3.880 19 C -0.552 4.552 20 H 0.085 0.915 21 C -0.145 4.145 22 N -0.538 5.538 23 Si 0.735 3.265 24 H -0.205 1.205 25 H -0.211 1.211 26 H -0.196 1.196 27 H 0.074 0.926 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.097 0.903 31 H 0.102 0.898 32 H 0.091 0.909 33 H 0.103 0.897 34 H 0.107 0.893 35 H 0.108 0.892 36 H 0.094 0.906 37 H 0.085 0.915 38 H 0.073 0.927 39 H 0.083 0.917 40 H 0.126 0.874 41 H 0.132 0.868 42 H 0.094 0.906 43 H 0.093 0.907 44 H 0.079 0.921 45 H 0.068 0.932 46 H 0.023 0.977 47 H 0.025 0.975 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.622 19.066 -21.048 28.407 hybrid contribution -0.101 -0.589 1.147 1.294 sum -0.723 18.477 -19.901 27.166 Atomic orbital electron populations 1.21708 0.94003 1.02258 1.02236 1.19999 0.96212 0.88760 1.03745 1.22117 0.97758 0.96653 0.90006 1.77312 1.21686 0.90487 1.22328 1.48197 1.51967 1.11336 1.03955 1.21799 1.00883 0.86215 0.94929 1.20725 0.99822 0.96975 0.84567 1.20257 0.98701 0.92984 0.98450 1.21741 0.97312 0.99529 1.01871 1.18970 1.15938 0.94145 0.94356 1.19528 0.93684 1.02096 0.91931 1.23780 0.90530 0.75655 0.80087 1.90639 1.39805 1.53543 1.55740 1.86605 1.38986 1.69746 1.30569 1.23163 0.82729 0.97407 0.96584 1.22316 0.94239 0.91977 0.93035 1.87918 1.59724 1.49938 1.33412 1.20234 0.96306 0.93497 0.77958 1.21050 1.22394 1.16807 0.94951 0.91481 1.24951 0.96878 0.97674 0.95031 1.69962 1.42869 1.41972 0.99043 0.86329 0.81088 0.81612 0.77432 1.20482 1.21085 1.19554 0.92632 0.91699 0.92221 0.90312 0.89838 0.90911 0.89689 0.89313 0.89248 0.90574 0.91521 0.92739 0.91705 0.87419 0.86786 0.90637 0.90686 0.92111 0.93243 0.97668 0.97501 0.92654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.89 37.16 0.37 -0.99 16 2 C -0.05 -0.54 6.17 -27.88 -0.17 -0.71 16 3 C 0.10 1.33 6.47 -82.40 -0.53 0.80 16 4 N -0.30 -4.05 12.58 33.67 0.42 -3.63 16 5 N -0.37 -4.17 4.01 -63.88 -0.26 -4.43 16 6 C 0.10 0.68 11.27 59.85 0.67 1.35 16 7 C 0.11 1.17 6.18 -82.27 -0.51 0.66 16 8 C -0.06 -0.50 5.77 -27.88 -0.16 -0.66 16 9 C -0.15 -0.89 9.89 37.16 0.37 -0.52 16 10 C -0.22 -2.76 4.59 -105.05 -0.48 -3.24 16 11 C -0.03 -0.39 5.58 -29.03 -0.16 -0.55 16 12 C 0.46 6.85 7.95 36.01 0.29 7.13 16 13 O -0.51 -8.83 15.78 -18.75 -0.30 -9.12 16 14 O -0.34 -5.72 10.19 -42.03 -0.43 -6.15 16 15 C 0.07 1.21 5.85 37.16 0.22 1.43 16 16 C 0.06 1.14 6.33 37.16 0.24 1.37 16 17 O -0.39 -9.47 10.30 -38.81 -0.40 -9.87 16 18 C 0.19 5.31 5.69 36.00 0.20 5.52 16 19 C -0.51 -15.14 9.43 -34.44 -0.32 -15.47 16 20 H 0.07 1.97 7.81 -52.49 -0.41 1.56 16 21 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 22 N -0.90 -26.81 13.29 55.43 0.74 -26.07 16 23 Si 0.91 21.80 29.54 -169.99 -5.02 16.78 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 26 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.08 0.97 7.92 -51.93 -0.41 0.56 16 32 H 0.07 0.36 8.14 -51.92 -0.42 -0.06 16 33 H 0.08 0.38 7.06 -51.93 -0.37 0.01 16 34 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.09 0.73 7.77 -51.93 -0.40 0.33 16 36 H 0.08 0.47 7.08 -51.93 -0.37 0.10 16 37 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 38 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 39 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.11 0.98 7.76 -51.93 -0.40 0.58 16 41 H 0.11 1.20 7.92 -51.93 -0.41 0.79 16 42 H 0.08 1.26 8.13 -51.93 -0.42 0.84 16 43 H 0.07 1.02 8.13 -51.93 -0.42 0.60 16 44 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.01 0.15 8.14 -51.92 -0.42 -0.27 16 47 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 48 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 407.28 15.07 6.14 6.14 Total: -1.00 -36.16 407.28 -7.44 -43.61 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: -8.25 Total: -4.88 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: -0.09 Total: -2.37 kcal Atomic # 7 Polarization: -35.02 SS G_CDS: 0.90 Total: -34.12 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: -1.12 Total: -25.14 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -36.16 -7.44 -43.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815237694.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.280 kcal (2) G-P(sol) polarization free energy of solvation -36.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds