Wall clock time and date at job start Tue Mar 31 2020 15:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34234 * 117.00183 * 2 1 4 4 O 1.20826 * 119.99754 * 0.02562 * 3 2 1 5 5 C 1.50697 * 119.99904 * 179.97438 * 3 2 1 6 6 C 1.53008 * 109.46623 * 179.97438 * 5 3 2 7 7 C 1.53004 * 109.46718 * 180.02562 * 6 5 3 8 8 N 1.46496 * 109.46907 * 180.02562 * 7 6 5 9 9 N 1.40074 * 126.03598 * 269.69001 * 8 7 6 10 10 C 1.30831 * 108.34372 * 179.81968 * 9 8 7 11 11 C 1.50693 * 125.86186 * 180.16190 * 10 9 8 12 12 C 1.52999 * 109.47323 * 234.51785 * 11 10 9 13 13 C 1.52997 * 109.47271 * 354.51937 * 11 10 9 14 14 C 1.53000 * 109.47301 * 114.51512 * 11 10 9 15 15 C 1.39827 * 108.28036 * 0.43973 * 10 9 8 16 16 C 1.50694 * 126.08186 * 179.75427 * 15 10 9 17 17 C 1.50700 * 109.47239 * 264.07533 * 16 15 10 18 18 H 1.07995 * 119.99578 * 0.02562 * 17 16 15 19 19 C 1.37879 * 120.00069 * 179.97438 * 17 16 15 20 20 N 1.31516 * 119.99755 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99983 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.46856 * 90.00350 * 21 19 17 23 23 H 1.48496 * 109.46982 * 210.00364 * 21 19 17 24 24 H 1.48498 * 109.47364 * 330.00248 * 21 19 17 25 25 C 1.35134 * 126.03833 * 90.00258 * 8 7 6 26 26 O 1.35759 * 126.19428 * 359.97438 * 25 8 7 27 27 H 1.09002 * 109.47181 * 300.00403 * 1 2 3 28 28 H 1.09005 * 109.46804 * 59.99888 * 1 2 3 29 29 H 1.08995 * 109.47346 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.46805 * 60.00784 * 5 3 2 31 31 H 1.08989 * 109.47524 * 299.99967 * 5 3 2 32 32 H 1.08997 * 109.47024 * 299.99874 * 6 5 3 33 33 H 1.08993 * 109.46879 * 60.00842 * 6 5 3 34 34 H 1.09000 * 109.46881 * 300.00088 * 7 6 5 35 35 H 1.09001 * 109.47170 * 60.00038 * 7 6 5 36 36 H 1.09001 * 109.46974 * 59.99747 * 12 11 10 37 37 H 1.08997 * 109.47523 * 180.02562 * 12 11 10 38 38 H 1.09004 * 109.46950 * 299.99599 * 12 11 10 39 39 H 1.09002 * 109.47645 * 59.99757 * 13 11 10 40 40 H 1.08995 * 109.47883 * 180.02562 * 13 11 10 41 41 H 1.09001 * 109.46790 * 300.00108 * 13 11 10 42 42 H 1.08999 * 109.46924 * 66.56097 * 14 11 10 43 43 H 1.09002 * 109.47509 * 186.55414 * 14 11 10 44 44 H 1.09000 * 109.47394 * 306.56263 * 14 11 10 45 45 H 1.09001 * 109.47551 * 24.08299 * 16 15 10 46 46 H 1.09002 * 109.46896 * 144.07729 * 16 15 10 47 47 H 0.97000 * 119.99832 * 179.97438 * 20 19 17 48 48 H 0.96701 * 113.99373 * 90.02436 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.0001 2.7421 -0.0002 7 6 5.5281 2.8221 -0.0002 8 7 5.9434 4.2270 -0.0004 9 7 6.1829 5.0154 -1.1331 10 6 6.5305 6.2124 -0.7356 11 6 6.8741 7.3748 -1.6310 12 6 8.2544 7.9174 -1.2552 13 6 6.8886 6.9092 -3.0883 14 6 5.8282 8.4780 -1.4586 15 6 6.5346 6.2263 0.6625 16 6 6.8818 7.4032 1.5374 17 6 8.3290 7.3139 1.9484 18 1 8.9365 6.4879 1.6096 19 6 8.8775 8.2875 2.7561 20 7 8.1377 9.2937 3.1682 21 14 10.6714 8.1773 3.2650 22 1 11.5136 8.8824 2.2657 23 1 10.8481 8.8107 4.5964 24 1 11.0787 6.7511 3.3374 25 6 6.1689 4.9894 1.0923 26 8 6.0511 4.5924 2.3852 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.9563 0.7806 -0.8892 31 1 3.9557 0.7809 0.8907 32 1 3.6108 3.2356 -0.8906 33 1 3.6101 3.2367 0.8893 34 1 5.9177 2.3284 0.8900 35 1 5.9178 2.3275 -0.8900 36 1 8.9996 7.1314 -1.3780 37 1 8.5028 8.7585 -1.9025 38 1 8.2440 8.2492 -0.2169 39 1 5.9053 6.5226 -3.3561 40 1 7.1376 7.7498 -3.7359 41 1 7.6338 6.1232 -3.2112 42 1 5.8975 8.8903 -0.4519 43 1 6.0093 9.2677 -2.1877 44 1 4.8325 8.0622 -1.6131 45 1 6.7175 8.3280 0.9844 46 1 6.2505 7.3941 2.4259 47 1 8.5235 9.9784 3.7367 48 1 6.8642 4.2269 2.7599 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844765714.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:17:38 Heat of formation + Delta-G solvation = -96.055178 kcal Electronic energy + Delta-G solvation = -28265.529587 eV Core-core repulsion = 24321.251161 eV Total energy + Delta-G solvation = -3944.278426 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.37724 -41.53824 -38.53554 -37.82403 -37.39511 -35.86204 -35.20180 -32.73588 -31.64644 -29.33055 -28.44873 -28.00161 -27.80777 -27.18124 -24.79895 -24.05496 -22.19820 -21.62390 -21.53635 -19.71928 -18.84965 -18.58872 -18.20494 -17.76476 -17.61678 -16.86560 -16.48818 -16.31635 -15.99212 -15.50729 -15.20522 -14.77366 -14.63060 -14.54331 -14.33344 -14.25679 -14.12118 -13.45893 -13.27434 -13.20887 -13.10899 -12.96715 -12.87158 -12.82183 -12.62402 -12.59281 -12.42406 -12.37123 -12.06179 -11.99608 -11.83056 -11.72834 -11.64172 -11.63459 -11.47652 -11.33609 -10.88225 -10.41933 -9.88070 -8.99419 -8.04556 -6.15170 0.83723 1.12095 1.41781 1.44418 1.45316 1.54581 1.80366 1.91824 2.49473 3.20857 3.24506 3.56560 3.64504 3.80452 3.87638 4.04374 4.21780 4.22249 4.23347 4.28732 4.29711 4.39137 4.49083 4.58780 4.61781 4.68805 4.76251 4.85968 4.91123 4.98910 5.01306 5.09573 5.11430 5.14710 5.16534 5.32424 5.33844 5.35493 5.46355 5.58853 5.77676 5.82392 5.84321 5.94108 6.01251 6.36614 6.66752 6.80824 6.89479 6.95312 7.50419 9.03093 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.014822 B = 0.003085 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.611760 B = 9073.730510 C =10143.718995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.361 6.361 3 C 0.458 3.542 4 O -0.550 6.550 5 C -0.098 4.098 6 C -0.116 4.116 7 C 0.133 3.867 8 N -0.385 5.385 9 N -0.294 5.294 10 C 0.090 3.910 11 C 0.016 3.984 12 C -0.145 4.145 13 C -0.122 4.122 14 C -0.135 4.135 15 C -0.224 4.224 16 C 0.104 3.896 17 C -0.497 4.497 18 H 0.048 0.952 19 C 0.009 3.991 20 N -0.930 5.930 21 Si 0.951 3.049 22 H -0.274 1.274 23 H -0.287 1.287 24 H -0.266 1.266 25 C 0.237 3.763 26 O -0.469 6.469 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.135 0.865 30 H 0.144 0.856 31 H 0.141 0.859 32 H 0.055 0.945 33 H 0.049 0.951 34 H 0.116 0.884 35 H 0.118 0.882 36 H 0.043 0.957 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.053 0.947 40 H 0.076 0.924 41 H 0.051 0.949 42 H 0.044 0.956 43 H 0.083 0.917 44 H 0.048 0.952 45 H 0.021 0.979 46 H -0.019 1.019 47 H 0.261 0.739 48 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.252 -18.700 -9.336 22.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.277 6.277 3 C 0.303 3.697 4 O -0.440 6.440 5 C -0.136 4.136 6 C -0.155 4.155 7 C 0.013 3.987 8 N -0.178 5.178 9 N -0.119 5.119 10 C -0.075 4.075 11 C 0.014 3.986 12 C -0.203 4.203 13 C -0.179 4.179 14 C -0.193 4.193 15 C -0.236 4.236 16 C 0.066 3.934 17 C -0.535 4.535 18 H 0.067 0.933 19 C -0.189 4.189 20 N -0.571 5.571 21 Si 0.777 3.223 22 H -0.200 1.200 23 H -0.213 1.213 24 H -0.191 1.191 25 C 0.069 3.931 26 O -0.273 6.273 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.153 0.847 30 H 0.162 0.838 31 H 0.159 0.841 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.134 0.866 35 H 0.136 0.864 36 H 0.062 0.938 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.072 0.928 40 H 0.095 0.905 41 H 0.070 0.930 42 H 0.063 0.937 43 H 0.102 0.898 44 H 0.067 0.933 45 H 0.039 0.961 46 H 0.000 1.000 47 H 0.070 0.930 48 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -8.311 -19.013 -10.144 23.097 hybrid contribution 0.894 0.768 1.706 2.073 sum -7.417 -18.246 -8.438 21.427 Atomic orbital electron populations 1.23525 0.75120 1.05720 1.02222 1.86496 1.24745 1.32690 1.83741 1.24368 0.93342 0.80959 0.70983 1.90711 1.68421 1.37876 1.46996 1.21336 0.85663 0.97313 1.09263 1.21653 0.95008 0.96244 1.02576 1.21852 0.94172 0.76201 1.06462 1.49057 1.54796 1.11266 1.02696 1.77144 1.24990 1.03255 1.06495 1.22116 0.98482 0.93986 0.92926 1.18997 0.96230 0.89807 0.93579 1.22007 0.94281 1.00339 1.03637 1.21685 1.01806 1.01306 0.93125 1.21872 0.97461 0.97801 1.02192 1.20409 1.11216 0.97133 0.94814 1.17381 0.94696 0.90091 0.91231 1.21187 0.95702 1.07714 1.28900 0.93326 1.25751 1.01587 0.95213 0.96353 1.70087 1.37659 1.12910 1.36447 0.85654 0.80746 0.78459 0.77442 1.20002 1.21313 1.19066 1.18464 1.03243 0.90321 0.81061 1.84760 1.40315 1.83121 1.19117 0.92459 0.92296 0.84725 0.83846 0.84114 0.92574 0.93201 0.86608 0.86365 0.93819 0.91124 0.91360 0.92773 0.90509 0.92969 0.93740 0.89822 0.93283 0.96107 1.00034 0.93005 0.73388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.56 113.37 1.20 1.55 16 2 O -0.36 -6.15 10.57 -51.45 -0.54 -6.70 16 3 C 0.46 9.48 7.96 71.23 0.57 10.05 16 4 O -0.55 -16.41 15.73 21.96 0.35 -16.06 16 5 C -0.10 -1.33 5.81 29.85 0.17 -1.15 16 6 C -0.12 -2.60 4.83 30.60 0.15 -2.45 16 7 C 0.13 2.87 6.39 86.38 0.55 3.42 16 8 N -0.38 -13.09 3.62 -459.75 -1.66 -14.75 16 9 N -0.29 -11.06 11.86 -47.42 -0.56 -11.62 16 10 C 0.09 3.67 5.61 43.09 0.24 3.91 16 11 C 0.02 0.57 0.75 -52.93 -0.04 0.53 16 12 C -0.14 -5.48 8.25 71.98 0.59 -4.88 16 13 C -0.12 -3.52 7.96 71.98 0.57 -2.95 16 14 C -0.14 -4.70 8.32 71.98 0.60 -4.10 16 15 C -0.22 -10.28 5.14 -20.01 -0.10 -10.38 16 16 C 0.10 5.54 4.49 29.10 0.13 5.67 16 17 C -0.50 -27.08 7.50 25.60 0.19 -26.88 16 18 H 0.05 2.62 7.74 -2.91 -0.02 2.60 16 19 C 0.01 0.48 5.46 84.65 0.46 0.94 16 20 N -0.93 -55.27 13.29 21.45 0.28 -54.98 16 21 Si 0.95 43.30 29.54 68.60 2.03 45.33 16 22 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 23 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 24 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 25 C 0.24 9.52 7.92 83.65 0.66 10.18 16 26 O -0.47 -17.02 13.53 -90.85 -1.23 -18.25 16 27 H 0.06 0.82 8.13 -2.39 -0.02 0.80 16 28 H 0.06 0.82 8.13 -2.38 -0.02 0.80 16 29 H 0.13 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.14 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.14 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.06 1.54 8.10 -2.39 -0.02 1.52 16 33 H 0.05 1.43 8.10 -2.39 -0.02 1.41 16 34 H 0.12 1.86 8.13 -2.39 -0.02 1.85 16 35 H 0.12 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 38 H 0.07 3.15 4.18 -2.39 -0.01 3.14 16 39 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.04 1.80 5.79 -2.39 -0.01 1.79 16 43 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 44 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 45 H 0.02 1.16 4.53 -2.39 -0.01 1.15 16 46 H -0.02 -1.12 8.14 -2.39 -0.02 -1.14 16 47 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 48 H 0.41 11.27 9.06 -74.06 -0.67 10.60 16 Total: -1.00 -77.17 394.28 4.90 -72.27 By element: Atomic # 1 Polarization: 21.02 SS G_CDS: 0.29 Total: 21.31 kcal Atomic # 6 Polarization: -22.49 SS G_CDS: 5.95 Total: -16.55 kcal Atomic # 7 Polarization: -79.41 SS G_CDS: -1.94 Total: -81.35 kcal Atomic # 8 Polarization: -39.58 SS G_CDS: -1.43 Total: -41.01 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -77.17 4.90 -72.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844765714.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.784 kcal (2) G-P(sol) polarization free energy of solvation -77.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds