Wall clock time and date at job start Tue Mar 31 2020 13:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.52995 * 109.47584 * 8.44127 * 3 2 1 5 5 N 1.46496 * 109.47310 * 179.97438 * 4 3 2 6 6 C 1.46504 * 120.00451 * 270.00229 * 5 4 3 7 7 C 1.50700 * 109.47175 * 270.00259 * 6 5 4 8 8 H 1.08003 * 119.99598 * 359.97438 * 7 6 5 9 9 C 1.37874 * 120.00201 * 179.97438 * 7 6 5 10 10 N 1.31511 * 120.00202 * 179.97438 * 9 7 6 11 11 Si 1.86799 * 119.99960 * 359.97438 * 9 7 6 12 12 H 1.48498 * 109.47000 * 89.99736 * 11 9 7 13 13 H 1.48502 * 109.47128 * 210.00049 * 11 9 7 14 14 H 1.48497 * 109.47009 * 329.99971 * 11 9 7 15 15 C 1.34783 * 120.00075 * 90.00257 * 5 4 3 16 16 O 1.21276 * 120.00087 * 179.97438 * 15 5 4 17 17 C 1.50700 * 119.99444 * 359.97438 * 15 5 4 18 18 C 1.53003 * 109.46858 * 179.97438 * 17 15 5 19 19 C 1.53000 * 109.47024 * 180.02562 * 18 17 15 20 20 O 1.42896 * 109.46947 * 179.97438 * 19 18 17 21 21 C 1.42899 * 114.00352 * 180.02562 * 20 19 18 22 22 C 1.53175 * 109.54545 * 269.56219 * 21 20 19 23 23 C 1.53094 * 109.16661 * 183.14980 * 22 21 20 24 24 O 1.42898 * 109.41211 * 57.60371 * 23 22 21 25 25 C 1.42897 * 114.10001 * 298.84343 * 24 23 22 26 26 C 1.53089 * 109.41656 * 61.16248 * 25 24 23 27 27 H 1.09009 * 109.47352 * 248.43805 * 3 2 1 28 28 H 1.09003 * 109.47105 * 128.44391 * 3 2 1 29 29 H 1.09000 * 109.46772 * 60.00047 * 4 3 2 30 30 H 1.08995 * 109.47264 * 299.99987 * 4 3 2 31 31 H 1.09000 * 109.46731 * 29.99759 * 6 5 4 32 32 H 1.08990 * 109.47568 * 149.99930 * 6 5 4 33 33 H 0.96997 * 119.99985 * 179.97438 * 10 9 7 34 34 H 1.09000 * 109.47009 * 60.00264 * 17 15 5 35 35 H 1.08994 * 109.47480 * 299.99706 * 17 15 5 36 36 H 1.09000 * 109.46988 * 60.00382 * 18 17 15 37 37 H 1.09001 * 109.47299 * 300.00044 * 18 17 15 38 38 H 1.09000 * 109.47001 * 60.00298 * 19 18 17 39 39 H 1.09001 * 109.47043 * 300.00109 * 19 18 17 40 40 H 1.09004 * 109.61153 * 29.77680 * 21 20 19 41 41 H 1.09004 * 109.52259 * 303.05246 * 22 21 20 42 42 H 1.09006 * 109.52330 * 63.24079 * 22 21 20 43 43 H 1.09006 * 109.47665 * 297.62062 * 23 22 21 44 44 H 1.08993 * 109.47955 * 177.58818 * 23 22 21 45 45 H 1.09002 * 109.48425 * 301.17758 * 25 24 23 46 46 H 1.09001 * 109.49443 * 181.15303 * 25 24 23 47 47 H 1.08997 * 109.52675 * 182.48845 * 26 25 24 48 48 H 1.08995 * 109.52428 * 62.29514 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1187 -1.4259 -0.2117 5 7 4.5837 -1.4251 -0.2123 6 6 5.3157 -1.2386 -1.4676 7 6 5.5673 -2.5801 -2.1065 8 1 5.2174 -3.4814 -1.6253 9 6 6.2443 -2.6567 -3.3052 10 7 6.4643 -3.8274 -3.8624 11 14 6.8489 -1.0976 -4.1377 12 1 8.2222 -0.7857 -3.6667 13 1 6.8634 -1.2960 -5.6093 14 1 5.9417 0.0282 -3.7988 15 6 5.2582 -1.5959 0.9420 16 8 6.4710 -1.5957 0.9414 17 6 4.5052 -1.7872 2.2333 18 6 5.5000 -1.9580 3.3832 19 6 4.7356 -2.1529 4.6942 20 8 5.6647 -2.3130 5.7680 21 6 5.0508 -2.5033 7.0443 22 6 4.8406 -1.1446 7.7196 23 6 4.2555 -1.3632 9.1173 24 8 5.1345 -2.1969 9.8751 25 6 5.3311 -3.4974 9.3164 26 6 5.9595 -3.3646 7.9268 27 1 2.9712 0.3785 0.9558 28 1 2.9711 0.6398 -0.8049 29 1 2.7556 -1.8037 -1.1675 30 1 2.7558 -2.0650 0.5931 31 1 4.7260 -0.6192 -2.1434 32 1 6.2678 -0.7489 -1.2637 33 1 6.9402 -3.8813 -4.7059 34 1 3.8787 -2.6762 2.1603 35 1 3.8786 -0.9154 2.4211 36 1 6.1268 -1.0693 3.4564 37 1 6.1264 -2.8300 3.1952 38 1 4.1090 -3.0418 4.6207 39 1 4.1089 -1.2811 4.8823 40 1 4.0888 -2.9999 6.9172 41 1 5.7963 -0.6269 7.8017 42 1 4.1506 -0.5454 7.1254 43 1 3.2812 -1.8445 9.0323 44 1 4.1438 -0.4020 9.6189 45 1 4.3710 -4.0067 9.2340 46 1 5.9941 -4.0739 9.9615 47 1 6.0696 -4.3530 7.4808 48 1 6.9378 -2.8918 8.0130 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000864978292.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:54 Heat of formation + Delta-G solvation = -115.290749 kcal Electronic energy + Delta-G solvation = -27041.657533 eV Core-core repulsion = 23096.544989 eV Total energy + Delta-G solvation = -3945.112543 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.97158 -39.47789 -37.81219 -36.96312 -35.41536 -34.03267 -32.84149 -32.19323 -31.54106 -31.04103 -28.56846 -26.64642 -24.57327 -24.09235 -23.98145 -22.73873 -21.37467 -20.61126 -18.56954 -17.79625 -17.27374 -16.88409 -16.72643 -16.51463 -16.23744 -16.02992 -15.53063 -15.26494 -14.98131 -14.73353 -14.40505 -14.25518 -13.89962 -13.72615 -13.59618 -13.11118 -12.82469 -12.67301 -12.57697 -12.50209 -12.36973 -12.07732 -11.89479 -11.74494 -11.68057 -11.53962 -11.49356 -11.12692 -11.02195 -10.96377 -10.77449 -10.68245 -10.57469 -10.23403 -10.07827 -9.70172 -9.61418 -9.14872 -8.63979 -7.93544 -6.13478 -4.13153 2.63665 2.72122 3.17458 3.23038 3.25711 3.30697 3.33648 3.47059 3.60271 4.10962 4.34161 4.34684 4.40081 4.55244 4.67681 4.78409 4.81225 4.89713 4.91121 4.94360 5.00506 5.03857 5.11598 5.18716 5.23419 5.25319 5.25799 5.34852 5.41393 5.43998 5.46160 5.58376 5.62057 5.74254 5.75087 5.83497 5.99721 6.14354 6.33017 6.57722 6.75739 6.85228 7.04068 7.17428 7.48358 7.54208 8.06198 8.40134 8.81587 8.90601 9.46057 10.99799 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.013568 B = 0.002392 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.146326 B =11703.763534 C =13202.590065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C 0.216 3.784 3 C -0.051 4.051 4 C 0.118 3.882 5 N -0.594 5.594 6 C 0.214 3.786 7 C -0.531 4.531 8 H 0.075 0.925 9 C 0.073 3.927 10 N -0.896 5.896 11 Si 0.876 3.124 12 H -0.273 1.273 13 H -0.285 1.285 14 H -0.265 1.265 15 C 0.510 3.490 16 O -0.530 6.530 17 C -0.140 4.140 18 C -0.103 4.103 19 C 0.063 3.937 20 O -0.376 6.376 21 C 0.089 3.911 22 C -0.179 4.179 23 C 0.063 3.937 24 O -0.383 6.383 25 C 0.064 3.936 26 C -0.155 4.155 27 H 0.107 0.893 28 H 0.115 0.885 29 H 0.096 0.904 30 H 0.079 0.921 31 H 0.032 0.968 32 H 0.039 0.961 33 H 0.265 0.735 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.049 0.951 39 H 0.047 0.953 40 H 0.060 0.940 41 H 0.082 0.918 42 H 0.075 0.925 43 H 0.050 0.950 44 H 0.097 0.903 45 H 0.051 0.949 46 H 0.100 0.900 47 H 0.081 0.919 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.009 5.272 22.616 24.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.120 5.120 2 C -0.102 4.102 3 C -0.093 4.093 4 C -0.009 4.009 5 N -0.326 5.326 6 C 0.094 3.906 7 C -0.570 4.570 8 H 0.093 0.907 9 C -0.130 4.130 10 N -0.534 5.534 11 Si 0.703 3.297 12 H -0.199 1.199 13 H -0.211 1.211 14 H -0.190 1.190 15 C 0.297 3.703 16 O -0.406 6.406 17 C -0.180 4.180 18 C -0.141 4.141 19 C -0.014 4.014 20 O -0.295 6.295 21 C 0.031 3.969 22 C -0.218 4.218 23 C -0.013 4.013 24 O -0.302 6.302 25 C -0.013 4.013 26 C -0.193 4.193 27 H 0.125 0.875 28 H 0.133 0.867 29 H 0.114 0.886 30 H 0.098 0.902 31 H 0.050 0.950 32 H 0.057 0.943 33 H 0.075 0.925 34 H 0.110 0.890 35 H 0.106 0.894 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.078 0.922 41 H 0.100 0.900 42 H 0.094 0.906 43 H 0.069 0.931 44 H 0.115 0.885 45 H 0.070 0.930 46 H 0.118 0.882 47 H 0.100 0.900 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -7.663 5.245 22.568 24.404 hybrid contribution 0.278 0.595 -0.993 1.191 sum -7.385 5.840 21.575 23.540 Atomic orbital electron populations 1.81223 1.13019 1.08562 1.09216 1.29070 0.95067 0.93183 0.92909 1.19905 0.81447 1.01898 1.06008 1.21321 0.81811 0.93006 1.04736 1.47897 1.04910 1.71018 1.08725 1.19720 0.92543 0.98091 0.80273 1.21301 1.37278 0.92502 1.05891 0.90697 1.24864 0.95208 0.96022 0.96910 1.69889 1.41281 1.23591 1.18634 0.86864 0.80164 0.83845 0.78869 1.19889 1.21122 1.19001 1.20314 0.88109 0.77125 0.84776 1.90704 1.13893 1.49564 1.86402 1.21637 0.99266 1.03668 0.93428 1.21218 0.97865 1.04833 0.90190 1.22603 0.91952 0.99617 0.87215 1.87965 1.33471 1.93221 1.14851 1.22055 0.96040 0.94744 0.84074 1.22748 1.03318 0.98727 0.96958 1.22561 0.92190 0.95328 0.91262 1.87943 1.67269 1.25312 1.49639 1.22589 1.00084 0.84830 0.93795 1.22305 1.00700 1.01120 0.95143 0.87470 0.86686 0.88583 0.90235 0.95041 0.94268 0.92503 0.89017 0.89397 0.90317 0.90100 0.93316 0.93481 0.92159 0.89952 0.90624 0.93125 0.88519 0.93034 0.88231 0.90004 0.89934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.11 18.54 42.15 0.78 -5.33 16 2 C 0.22 2.37 15.43 -20.76 -0.32 2.05 16 3 C -0.05 -0.46 6.02 -29.52 -0.18 -0.64 16 4 C 0.12 1.44 5.17 -4.05 -0.02 1.42 16 5 N -0.59 -10.20 2.46 -175.07 -0.43 -10.63 16 6 C 0.21 4.66 4.23 -5.19 -0.02 4.64 16 7 C -0.53 -14.30 9.94 -34.44 -0.34 -14.64 16 8 H 0.07 2.23 8.06 -52.48 -0.42 1.80 16 9 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 10 N -0.90 -26.81 13.96 55.43 0.77 -26.03 16 11 Si 0.88 20.57 27.47 -169.99 -4.67 15.90 16 12 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 13 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 14 H -0.27 -5.72 6.54 56.52 0.37 -5.35 16 15 C 0.51 8.83 7.67 -10.98 -0.08 8.74 16 16 O -0.53 -11.79 15.56 5.56 0.09 -11.71 16 17 C -0.14 -1.61 4.25 -27.88 -0.12 -1.73 16 18 C -0.10 -1.27 4.87 -26.73 -0.13 -1.40 16 19 C 0.06 0.62 5.76 37.16 0.21 0.83 16 20 O -0.38 -4.28 10.00 -35.23 -0.35 -4.63 16 21 C 0.09 0.78 2.70 -26.55 -0.07 0.70 16 22 C -0.18 -1.39 5.76 -26.59 -0.15 -1.54 16 23 C 0.06 0.44 6.84 37.21 0.25 0.69 16 24 O -0.38 -3.38 10.76 -35.23 -0.38 -3.76 16 25 C 0.06 0.44 6.84 37.20 0.25 0.69 16 26 C -0.15 -1.24 5.79 -26.59 -0.15 -1.40 16 27 H 0.11 0.74 7.22 -51.92 -0.37 0.36 16 28 H 0.12 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.10 1.29 8.07 -51.93 -0.42 0.87 16 30 H 0.08 0.79 6.44 -51.93 -0.33 0.46 16 31 H 0.03 0.64 7.13 -51.93 -0.37 0.27 16 32 H 0.04 0.93 6.85 -51.93 -0.36 0.57 16 33 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 34 H 0.09 0.93 7.40 -51.93 -0.38 0.54 16 35 H 0.09 0.73 7.18 -51.93 -0.37 0.36 16 36 H 0.08 1.06 8.10 -51.93 -0.42 0.64 16 37 H 0.08 1.18 8.10 -51.93 -0.42 0.76 16 38 H 0.05 0.43 8.09 -51.93 -0.42 0.01 16 39 H 0.05 0.38 8.00 -51.93 -0.42 -0.03 16 40 H 0.06 0.46 7.79 -51.93 -0.40 0.05 16 41 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.08 0.52 8.00 -51.93 -0.42 0.10 16 43 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 44 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 46 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 396.11 15.07 5.97 5.97 Total: -1.00 -35.07 396.11 -7.27 -42.34 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -8.08 Total: -2.47 kcal Atomic # 6 Polarization: 1.32 SS G_CDS: -0.97 Total: 0.35 kcal Atomic # 7 Polarization: -43.11 SS G_CDS: 1.12 Total: -41.99 kcal Atomic # 8 Polarization: -19.46 SS G_CDS: -0.64 Total: -20.10 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -4.67 Total: 15.90 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.07 -7.27 -42.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000864978292.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.951 kcal (2) G-P(sol) polarization free energy of solvation -35.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds