Wall clock time and date at job start Tue Mar 31 2020 13:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.52995 * 109.47584 * 8.44127 * 3 2 1 5 5 N 1.46496 * 109.47310 * 179.97438 * 4 3 2 6 6 C 1.46504 * 120.00451 * 270.00229 * 5 4 3 7 7 C 1.50700 * 109.47175 * 270.00259 * 6 5 4 8 8 H 1.08003 * 119.99598 * 359.97438 * 7 6 5 9 9 C 1.37874 * 120.00201 * 179.97438 * 7 6 5 10 10 N 1.31511 * 120.00202 * 179.97438 * 9 7 6 11 11 Si 1.86799 * 119.99960 * 359.97438 * 9 7 6 12 12 H 1.48498 * 109.47000 * 89.99736 * 11 9 7 13 13 H 1.48502 * 109.47128 * 210.00049 * 11 9 7 14 14 H 1.48497 * 109.47009 * 329.99971 * 11 9 7 15 15 C 1.34783 * 120.00075 * 90.00257 * 5 4 3 16 16 O 1.21276 * 120.00087 * 179.97438 * 15 5 4 17 17 C 1.50700 * 119.99444 * 359.97438 * 15 5 4 18 18 C 1.53003 * 109.46858 * 179.97438 * 17 15 5 19 19 C 1.53000 * 109.47024 * 180.02562 * 18 17 15 20 20 O 1.42896 * 109.46947 * 179.97438 * 19 18 17 21 21 C 1.42899 * 114.00352 * 180.02562 * 20 19 18 22 22 C 1.53175 * 109.54545 * 269.56219 * 21 20 19 23 23 C 1.53094 * 109.16661 * 183.14980 * 22 21 20 24 24 O 1.42898 * 109.41211 * 57.60371 * 23 22 21 25 25 C 1.42897 * 114.10001 * 298.84343 * 24 23 22 26 26 C 1.53089 * 109.41656 * 61.16248 * 25 24 23 27 27 H 1.09009 * 109.47352 * 248.43805 * 3 2 1 28 28 H 1.09003 * 109.47105 * 128.44391 * 3 2 1 29 29 H 1.09000 * 109.46772 * 60.00047 * 4 3 2 30 30 H 1.08995 * 109.47264 * 299.99987 * 4 3 2 31 31 H 1.09000 * 109.46731 * 29.99759 * 6 5 4 32 32 H 1.08990 * 109.47568 * 149.99930 * 6 5 4 33 33 H 0.96997 * 119.99985 * 179.97438 * 10 9 7 34 34 H 1.09000 * 109.47009 * 60.00264 * 17 15 5 35 35 H 1.08994 * 109.47480 * 299.99706 * 17 15 5 36 36 H 1.09000 * 109.46988 * 60.00382 * 18 17 15 37 37 H 1.09001 * 109.47299 * 300.00044 * 18 17 15 38 38 H 1.09000 * 109.47001 * 60.00298 * 19 18 17 39 39 H 1.09001 * 109.47043 * 300.00109 * 19 18 17 40 40 H 1.09004 * 109.61153 * 29.77680 * 21 20 19 41 41 H 1.09004 * 109.52259 * 303.05246 * 22 21 20 42 42 H 1.09006 * 109.52330 * 63.24079 * 22 21 20 43 43 H 1.09006 * 109.47665 * 297.62062 * 23 22 21 44 44 H 1.08993 * 109.47955 * 177.58818 * 23 22 21 45 45 H 1.09002 * 109.48425 * 301.17758 * 25 24 23 46 46 H 1.09001 * 109.49443 * 181.15303 * 25 24 23 47 47 H 1.08997 * 109.52675 * 182.48845 * 26 25 24 48 48 H 1.08995 * 109.52428 * 62.29514 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1187 -1.4259 -0.2117 5 7 4.5837 -1.4251 -0.2123 6 6 5.3157 -1.2386 -1.4676 7 6 5.5673 -2.5801 -2.1065 8 1 5.2174 -3.4814 -1.6253 9 6 6.2443 -2.6567 -3.3052 10 7 6.4643 -3.8274 -3.8624 11 14 6.8489 -1.0976 -4.1377 12 1 8.2222 -0.7857 -3.6667 13 1 6.8634 -1.2960 -5.6093 14 1 5.9417 0.0282 -3.7988 15 6 5.2582 -1.5959 0.9420 16 8 6.4710 -1.5957 0.9414 17 6 4.5052 -1.7872 2.2333 18 6 5.5000 -1.9580 3.3832 19 6 4.7356 -2.1529 4.6942 20 8 5.6647 -2.3130 5.7680 21 6 5.0508 -2.5033 7.0443 22 6 4.8406 -1.1446 7.7196 23 6 4.2555 -1.3632 9.1173 24 8 5.1345 -2.1969 9.8751 25 6 5.3311 -3.4974 9.3164 26 6 5.9595 -3.3646 7.9268 27 1 2.9712 0.3785 0.9558 28 1 2.9711 0.6398 -0.8049 29 1 2.7556 -1.8037 -1.1675 30 1 2.7558 -2.0650 0.5931 31 1 4.7260 -0.6192 -2.1434 32 1 6.2678 -0.7489 -1.2637 33 1 6.9402 -3.8813 -4.7059 34 1 3.8787 -2.6762 2.1603 35 1 3.8786 -0.9154 2.4211 36 1 6.1268 -1.0693 3.4564 37 1 6.1264 -2.8300 3.1952 38 1 4.1090 -3.0418 4.6207 39 1 4.1089 -1.2811 4.8823 40 1 4.0888 -2.9999 6.9172 41 1 5.7963 -0.6269 7.8017 42 1 4.1506 -0.5454 7.1254 43 1 3.2812 -1.8445 9.0323 44 1 4.1438 -0.4020 9.6189 45 1 4.3710 -4.0067 9.2340 46 1 5.9941 -4.0739 9.9615 47 1 6.0696 -4.3530 7.4808 48 1 6.9378 -2.8918 8.0130 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000864978292.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:53 Heat of formation + Delta-G solvation = -139.388435 kcal Electronic energy + Delta-G solvation = -27042.702487 eV Core-core repulsion = 23096.544989 eV Total energy + Delta-G solvation = -3946.157497 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.87058 -40.52305 -38.53985 -37.97180 -36.72352 -35.07849 -34.61917 -33.03707 -32.26346 -32.08342 -30.09836 -27.79221 -25.26550 -25.18046 -24.61785 -24.16270 -22.45411 -21.26186 -19.84233 -19.16123 -18.46470 -18.02450 -17.82763 -17.19513 -17.11038 -16.87515 -16.73239 -16.12970 -15.86907 -15.77250 -15.66791 -15.14770 -14.87918 -14.76915 -14.57588 -14.36913 -13.99493 -13.77556 -13.69632 -13.51504 -13.39691 -13.23698 -12.96686 -12.85667 -12.69080 -12.45840 -12.34670 -12.34192 -12.21077 -11.96235 -11.89690 -11.75934 -11.68512 -11.59099 -11.30935 -10.77385 -10.66278 -10.58493 -10.39620 -9.43209 -8.28057 -6.32452 1.38042 1.42553 1.49618 1.72034 1.88698 1.89637 2.25982 2.36349 2.66362 2.97593 3.07370 3.20030 3.73485 3.77716 3.82566 3.99557 4.04998 4.07353 4.08259 4.15679 4.18660 4.27761 4.37786 4.48262 4.51543 4.54375 4.62868 4.67628 4.68652 4.75242 4.77769 4.84821 4.85567 4.91305 5.06549 5.07006 5.12671 5.15067 5.19540 5.23554 5.36324 5.53737 5.66640 6.24013 6.29596 6.34897 6.64857 6.70582 6.73944 7.28432 7.49570 8.88889 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.013568 B = 0.002392 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.146326 B =11703.763534 C =13202.590065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C 0.246 3.754 3 C -0.038 4.038 4 C 0.111 3.889 5 N -0.596 5.596 6 C 0.220 3.780 7 C -0.532 4.532 8 H 0.029 0.971 9 C 0.006 3.994 10 N -0.950 5.950 11 Si 0.944 3.056 12 H -0.280 1.280 13 H -0.283 1.283 14 H -0.226 1.226 15 C 0.500 3.500 16 O -0.591 6.591 17 C -0.126 4.126 18 C -0.100 4.100 19 C 0.066 3.934 20 O -0.405 6.405 21 C 0.083 3.917 22 C -0.175 4.175 23 C 0.061 3.939 24 O -0.405 6.405 25 C 0.064 3.936 26 C -0.155 4.155 27 H 0.143 0.857 28 H 0.126 0.874 29 H 0.081 0.919 30 H 0.107 0.893 31 H 0.060 0.940 32 H 0.023 0.977 33 H 0.266 0.734 34 H 0.114 0.886 35 H 0.136 0.864 36 H 0.060 0.940 37 H 0.045 0.955 38 H 0.064 0.936 39 H 0.074 0.926 40 H 0.078 0.922 41 H 0.062 0.938 42 H 0.089 0.911 43 H 0.067 0.933 44 H 0.107 0.893 45 H 0.068 0.932 46 H 0.109 0.891 47 H 0.083 0.917 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.303 7.475 23.979 26.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.170 5.170 2 C -0.071 4.071 3 C -0.079 4.079 4 C -0.013 4.013 5 N -0.327 5.327 6 C 0.098 3.902 7 C -0.571 4.571 8 H 0.047 0.953 9 C -0.191 4.191 10 N -0.591 5.591 11 Si 0.767 3.233 12 H -0.206 1.206 13 H -0.209 1.209 14 H -0.149 1.149 15 C 0.290 3.710 16 O -0.472 6.472 17 C -0.165 4.165 18 C -0.138 4.138 19 C -0.010 4.010 20 O -0.325 6.325 21 C 0.025 3.975 22 C -0.213 4.213 23 C -0.015 4.015 24 O -0.324 6.324 25 C -0.012 4.012 26 C -0.193 4.193 27 H 0.160 0.840 28 H 0.144 0.856 29 H 0.099 0.901 30 H 0.126 0.874 31 H 0.078 0.922 32 H 0.041 0.959 33 H 0.074 0.926 34 H 0.132 0.868 35 H 0.154 0.846 36 H 0.079 0.921 37 H 0.064 0.936 38 H 0.082 0.918 39 H 0.092 0.908 40 H 0.096 0.904 41 H 0.081 0.919 42 H 0.107 0.893 43 H 0.085 0.915 44 H 0.125 0.875 45 H 0.086 0.914 46 H 0.127 0.873 47 H 0.102 0.898 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.028 7.464 23.960 27.025 hybrid contribution 1.019 -0.209 -1.369 1.720 sum -9.009 7.255 22.591 25.380 Atomic orbital electron populations 1.81275 1.14604 1.10057 1.11107 1.29190 0.94993 0.91688 0.91271 1.19870 0.79893 0.99703 1.08405 1.21552 0.78644 0.95834 1.05296 1.47879 1.06882 1.70682 1.07218 1.19395 0.93147 0.95098 0.82549 1.21636 1.36247 0.93511 1.05683 0.95280 1.25879 0.95572 0.99683 0.97975 1.70062 1.43072 1.26474 1.19448 0.85764 0.79703 0.80406 0.77377 1.20576 1.20921 1.14861 1.21380 0.87755 0.75417 0.86416 1.90679 1.16865 1.52181 1.87433 1.21651 0.98793 1.06749 0.89322 1.21133 0.97934 1.02434 0.92323 1.22593 0.91423 1.01507 0.85436 1.87937 1.34983 1.93512 1.16112 1.22244 0.96625 0.95528 0.83061 1.22710 1.02736 0.98149 0.97749 1.22699 0.92432 0.95848 0.90541 1.87915 1.67906 1.26194 1.50421 1.22682 1.01049 0.84462 0.93012 1.22316 0.99939 1.00993 0.96089 0.83982 0.85629 0.90082 0.87441 0.92212 0.95923 0.92558 0.86758 0.84598 0.92077 0.93643 0.91782 0.90788 0.90431 0.91905 0.89284 0.91459 0.87479 0.91397 0.87290 0.89802 0.91852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -12.31 18.54 20.01 0.37 -11.94 16 2 C 0.25 4.48 15.43 89.44 1.38 5.87 16 3 C -0.04 -0.51 6.02 28.79 0.17 -0.34 16 4 C 0.11 2.35 5.17 86.38 0.45 2.80 16 5 N -0.60 -19.43 2.46 -826.18 -2.03 -21.46 16 6 C 0.22 9.38 4.23 85.63 0.36 9.74 16 7 C -0.53 -29.31 9.94 25.60 0.25 -29.06 16 8 H 0.03 1.81 8.06 -2.91 -0.02 1.78 16 9 C 0.01 0.36 5.47 84.65 0.46 0.82 16 10 N -0.95 -58.98 13.96 21.45 0.30 -58.68 16 11 Si 0.94 42.32 27.47 68.60 1.88 44.20 16 12 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 13 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 14 H -0.23 -8.62 6.54 99.48 0.65 -7.97 16 15 C 0.50 16.78 7.67 87.66 0.67 17.46 16 16 O -0.59 -26.97 15.56 -3.02 -0.05 -27.02 16 17 C -0.13 -2.51 4.25 29.85 0.13 -2.39 16 18 C -0.10 -2.35 4.87 30.60 0.15 -2.21 16 19 C 0.07 1.13 5.76 71.98 0.41 1.54 16 20 O -0.41 -8.79 10.00 -148.98 -1.49 -10.28 16 21 C 0.08 1.30 2.70 30.71 0.08 1.39 16 22 C -0.18 -2.40 5.76 30.68 0.18 -2.22 16 23 C 0.06 0.71 6.84 72.01 0.49 1.20 16 24 O -0.41 -6.58 10.76 -148.98 -1.60 -8.19 16 25 C 0.06 0.79 6.84 72.01 0.49 1.29 16 26 C -0.16 -2.40 5.79 30.68 0.18 -2.22 16 27 H 0.14 1.05 7.22 -2.38 -0.02 1.03 16 28 H 0.13 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.08 2.00 8.07 -2.39 -0.02 1.98 16 30 H 0.11 1.69 6.44 -2.39 -0.02 1.68 16 31 H 0.06 2.22 7.13 -2.39 -0.02 2.21 16 32 H 0.02 1.05 6.85 -2.39 -0.02 1.04 16 33 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 34 H 0.11 1.85 7.40 -2.39 -0.02 1.83 16 35 H 0.14 1.45 7.18 -2.39 -0.02 1.44 16 36 H 0.06 1.63 8.10 -2.39 -0.02 1.61 16 37 H 0.04 1.37 8.10 -2.39 -0.02 1.35 16 38 H 0.06 0.90 8.09 -2.39 -0.02 0.88 16 39 H 0.07 0.88 8.00 -2.39 -0.02 0.86 16 40 H 0.08 0.94 7.79 -2.38 -0.02 0.92 16 41 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 42 H 0.09 0.95 8.00 -2.38 -0.02 0.93 16 43 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 44 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 46 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 47 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 48 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -83.28 396.11 4.13 -79.15 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: 0.88 Total: 10.53 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: 5.87 Total: 3.68 kcal Atomic # 7 Polarization: -90.71 SS G_CDS: -1.36 Total: -92.07 kcal Atomic # 8 Polarization: -42.35 SS G_CDS: -3.14 Total: -45.49 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 1.88 Total: 44.20 kcal Total: -83.28 4.13 -79.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000864978292.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.235 kcal (2) G-P(sol) polarization free energy of solvation -83.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds