Wall clock time and date at job start Tue Mar 31 2020 14:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35254 * 126.07241 * 2 1 4 4 C 1.40402 * 107.86834 * 179.97438 * 3 2 1 5 5 N 1.40193 * 125.97368 * 179.97438 * 4 3 2 6 6 C 1.34780 * 119.99580 * 359.97438 * 5 4 3 7 7 O 1.21587 * 120.00526 * 354.79044 * 6 5 4 8 8 N 1.34776 * 119.99719 * 175.06443 * 6 5 4 9 9 C 1.46933 * 120.63157 * 4.75452 * 8 6 5 10 10 C 1.53191 * 108.77129 * 233.58497 * 9 8 6 11 11 C 1.53038 * 109.31418 * 305.35911 * 10 9 8 12 12 C 1.53045 * 109.53485 * 61.37000 * 11 10 9 13 13 H 1.08997 * 109.49720 * 58.61924 * 12 11 10 14 14 C 1.53007 * 109.49569 * 178.68497 * 12 11 10 15 15 F 1.39904 * 109.46765 * 299.99838 * 14 12 11 16 16 C 1.46925 * 120.63254 * 184.46998 * 8 6 5 17 17 N 1.31208 * 108.05386 * 0.24099 * 4 3 2 18 18 N 1.34965 * 126.07049 * 179.97438 * 2 1 3 19 19 C 1.46495 * 125.97574 * 0.03260 * 18 2 1 20 20 C 1.50697 * 109.47047 * 90.00525 * 19 18 2 21 21 H 1.08008 * 120.00064 * 359.97438 * 20 19 18 22 22 C 1.37876 * 120.00009 * 180.02562 * 20 19 18 23 23 N 1.31523 * 120.00054 * 179.97438 * 22 20 19 24 24 Si 1.86793 * 120.00165 * 359.97438 * 22 20 19 25 25 H 1.48506 * 109.46838 * 90.00112 * 24 22 20 26 26 H 1.48502 * 109.47482 * 210.00161 * 24 22 20 27 27 H 1.48496 * 109.47357 * 330.00481 * 24 22 20 28 28 H 1.08998 * 109.47097 * 90.01991 * 1 2 3 29 29 H 1.09001 * 109.46903 * 210.02809 * 1 2 3 30 30 H 1.09005 * 109.46536 * 330.01866 * 1 2 3 31 31 H 1.08001 * 126.06164 * 359.97438 * 3 2 1 32 32 H 0.96993 * 120.00217 * 180.02562 * 5 4 3 33 33 H 1.08997 * 109.58210 * 353.36907 * 9 8 6 34 34 H 1.08991 * 109.58601 * 113.65340 * 9 8 6 35 35 H 1.08995 * 109.49965 * 65.31420 * 10 9 8 36 36 H 1.09008 * 109.49531 * 185.37944 * 10 9 8 37 37 H 1.09001 * 109.46305 * 181.38519 * 11 10 9 38 38 H 1.08994 * 109.46080 * 301.36189 * 11 10 9 39 39 H 1.08997 * 109.47429 * 59.99829 * 14 12 11 40 40 H 1.08994 * 109.46613 * 180.02562 * 14 12 11 41 41 H 1.08996 * 109.58784 * 246.20647 * 16 8 6 42 42 H 1.08999 * 109.58286 * 6.62743 * 16 8 6 43 43 H 1.09005 * 109.47274 * 210.00116 * 19 18 2 44 44 H 1.08995 * 109.47143 * 330.00580 * 19 18 2 45 45 H 0.97000 * 119.99887 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0932 0.0000 4 6 3.6371 0.6546 0.0006 5 7 4.7738 1.4751 0.0003 6 6 4.6370 2.8159 -0.0012 7 8 3.5322 3.3143 -0.0979 8 7 5.7254 3.6044 0.0989 9 6 7.0742 3.0215 0.1058 10 6 7.8231 3.5262 1.3431 11 6 7.7997 5.0563 1.3598 12 6 6.3516 5.5452 1.4390 13 1 5.8814 5.1456 2.3374 14 6 6.3309 7.0743 1.4886 15 9 7.0335 7.5138 2.6158 16 6 5.5862 5.0638 0.1971 17 7 3.6337 -0.6575 -0.0043 18 7 2.3016 -1.0909 0.0005 19 6 1.8500 -2.4845 0.0004 20 6 1.6960 -2.9626 -1.4204 21 1 1.9124 -2.2949 -2.2413 22 6 1.2778 -4.2520 -1.6724 23 7 1.1428 -4.6691 -2.9124 24 14 0.9028 -5.4066 -0.2527 25 1 -0.5284 -5.2805 0.1231 26 1 1.1852 -6.8052 -0.6642 27 1 1.7533 -5.0519 0.9117 28 1 -0.3633 -0.0004 -1.0276 29 1 -0.3633 -0.8897 0.5143 30 1 -0.3632 0.8902 0.5136 31 1 1.9720 2.1211 -0.0004 32 1 5.6587 1.0779 0.0004 33 1 7.0021 1.9344 0.1404 34 1 7.6075 3.3238 -0.7954 35 1 7.3388 3.1451 2.2421 36 1 8.8555 3.1780 1.3107 37 1 8.3531 5.4186 2.2262 38 1 8.2619 5.4365 0.4488 39 1 6.8003 7.4735 0.5895 40 1 5.2994 7.4219 1.5454 41 1 6.0016 5.5313 -0.6956 42 1 4.5322 5.3247 0.2919 43 1 2.5845 -3.1045 0.5147 44 1 0.8912 -2.5558 0.5137 45 1 0.8490 -5.5763 -3.0897 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879078104.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:50 Heat of formation + Delta-G solvation = -19.853787 kcal Electronic energy + Delta-G solvation = -27356.579457 eV Core-core repulsion = 23324.437817 eV Total energy + Delta-G solvation = -4032.141640 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.170 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.54668 -42.41719 -41.36086 -38.82003 -36.43410 -35.37038 -34.46516 -32.99802 -32.82136 -32.70379 -29.07903 -27.90271 -27.25242 -26.56400 -24.49874 -23.41957 -22.70836 -21.31405 -21.27075 -20.32988 -19.23043 -18.92709 -17.85263 -17.31585 -16.98792 -16.84153 -16.70030 -16.38307 -16.28991 -15.68931 -15.53751 -15.40743 -15.22390 -14.91197 -14.50541 -14.35526 -14.24902 -13.94948 -13.82277 -13.75295 -13.61220 -13.21934 -12.88497 -12.80383 -12.52683 -12.35345 -12.29869 -11.98217 -11.89775 -11.83856 -11.60852 -11.55571 -11.44965 -11.29870 -11.07564 -10.88693 -9.84896 -9.57169 -9.04190 -8.39960 -6.51048 0.94296 1.06856 1.35458 1.38349 1.48312 1.60613 1.95178 2.27255 2.32300 2.74285 2.92364 3.54466 3.60200 3.73017 3.80632 3.96533 4.04651 4.12642 4.21148 4.28237 4.36587 4.39702 4.49229 4.52355 4.61063 4.69001 4.78593 4.80253 4.82567 4.83061 4.86564 4.96058 5.00000 5.10246 5.11556 5.18968 5.23086 5.24068 5.39678 5.51912 5.71362 5.87917 6.00726 6.37429 6.51558 6.56500 7.02784 7.12816 7.33208 8.76746 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.028066 B = 0.002379 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.398883 B =11765.867815 C =12191.165369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.091 3.909 3 C -0.297 4.297 4 C 0.293 3.707 5 N -0.638 5.638 6 C 0.712 3.288 7 O -0.598 6.598 8 N -0.616 5.616 9 C 0.100 3.900 10 C -0.129 4.129 11 C -0.113 4.113 12 C -0.131 4.131 13 H 0.067 0.933 14 C 0.066 3.934 15 F -0.232 7.232 16 C 0.136 3.864 17 N -0.357 5.357 18 N -0.343 5.343 19 C 0.242 3.758 20 C -0.550 4.550 21 H 0.023 0.977 22 C 0.021 3.979 23 N -0.938 5.938 24 Si 0.951 3.049 25 H -0.250 1.250 26 H -0.278 1.278 27 H -0.244 1.244 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.108 0.892 31 H 0.166 0.834 32 H 0.418 0.582 33 H 0.079 0.921 34 H 0.098 0.902 35 H 0.054 0.946 36 H 0.100 0.900 37 H 0.070 0.930 38 H 0.086 0.914 39 H 0.102 0.898 40 H 0.087 0.913 41 H 0.096 0.904 42 H 0.083 0.917 43 H 0.049 0.951 44 H 0.073 0.927 45 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.354 21.268 10.480 26.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.039 4.039 3 C -0.328 4.328 4 C 0.037 3.963 5 N -0.292 5.292 6 C 0.413 3.587 7 O -0.476 6.476 8 N -0.353 5.353 9 C -0.022 4.022 10 C -0.167 4.167 11 C -0.150 4.150 12 C -0.150 4.150 13 H 0.085 0.915 14 C 0.011 3.989 15 F -0.213 7.213 16 C 0.013 3.987 17 N -0.188 5.188 18 N -0.126 5.126 19 C 0.122 3.878 20 C -0.588 4.588 21 H 0.041 0.959 22 C -0.179 4.179 23 N -0.576 5.576 24 Si 0.772 3.228 25 H -0.174 1.174 26 H -0.204 1.204 27 H -0.168 1.168 28 H 0.096 0.904 29 H 0.097 0.903 30 H 0.126 0.874 31 H 0.183 0.817 32 H 0.258 0.742 33 H 0.097 0.903 34 H 0.116 0.884 35 H 0.073 0.927 36 H 0.119 0.881 37 H 0.089 0.911 38 H 0.104 0.896 39 H 0.120 0.880 40 H 0.105 0.895 41 H 0.114 0.886 42 H 0.101 0.899 43 H 0.067 0.933 44 H 0.091 0.909 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 12.249 20.351 10.330 25.902 hybrid contribution -0.106 -0.469 -0.057 0.484 sum 12.144 19.882 10.274 25.462 Atomic orbital electron populations 1.20509 0.85107 1.04760 1.03818 1.21750 0.96713 0.86334 0.99135 1.21404 0.89953 0.99962 1.21480 1.18975 0.88122 0.88976 1.00203 1.41621 1.07034 1.03962 1.76569 1.15711 0.84932 0.80216 0.77801 1.90827 1.25310 1.73720 1.57763 1.47246 1.04682 1.06989 1.76385 1.22016 0.81302 0.98299 1.00563 1.21885 1.01678 0.96200 0.96967 1.21552 0.94549 0.95214 1.03689 1.22163 0.98181 0.95776 0.98928 0.91453 1.22077 0.97643 0.93009 0.86156 1.92734 1.81787 1.90811 1.56005 1.21604 1.01965 0.77106 0.98005 1.77157 0.99804 1.09672 1.32142 1.48420 1.01766 1.07058 1.55312 1.19772 0.96448 0.74579 0.97017 1.21250 1.47673 0.98715 0.91157 0.95891 1.25844 0.93745 0.99221 0.99076 1.70041 1.46963 1.19014 1.21596 0.85672 0.80507 0.77654 0.78963 1.17405 1.20369 1.16778 0.90417 0.90269 0.87376 0.81703 0.74216 0.90295 0.88434 0.92667 0.88118 0.91112 0.89581 0.87990 0.89510 0.88553 0.89875 0.93252 0.90920 0.91743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.71 10.11 71.23 0.72 -1.99 16 2 C 0.09 3.77 6.93 41.39 0.29 4.06 16 3 C -0.30 -12.31 9.52 22.11 0.21 -12.10 16 4 C 0.29 12.07 8.11 133.31 1.08 13.15 16 5 N -0.64 -20.16 5.36 -321.23 -1.72 -21.89 16 6 C 0.71 21.04 8.26 179.05 1.48 22.52 16 7 O -0.60 -21.65 12.93 -3.99 -0.05 -21.70 16 8 N -0.62 -11.98 2.97 -836.08 -2.48 -14.46 16 9 C 0.10 1.27 6.43 86.36 0.56 1.82 16 10 C -0.13 -1.31 6.08 30.67 0.19 -1.12 16 11 C -0.11 -1.06 5.06 30.62 0.15 -0.91 16 12 C -0.13 -1.56 2.68 -10.57 -0.03 -1.59 16 13 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 14 C 0.07 0.63 6.96 71.98 0.50 1.13 16 15 F -0.23 -3.65 16.82 44.97 0.76 -2.89 16 16 C 0.14 2.00 5.73 86.51 0.50 2.50 16 17 N -0.36 -16.63 12.59 -54.44 -0.69 -17.32 16 18 N -0.34 -16.16 3.59 -338.46 -1.22 -17.38 16 19 C 0.24 11.59 5.06 85.63 0.43 12.02 16 20 C -0.55 -31.75 9.94 25.60 0.25 -31.49 16 21 H 0.02 1.54 8.06 -2.91 -0.02 1.52 16 22 C 0.02 1.17 5.47 84.65 0.46 1.63 16 23 N -0.94 -57.22 13.96 21.45 0.30 -56.92 16 24 Si 0.95 40.81 27.47 68.60 1.88 42.69 16 25 H -0.25 -9.89 7.11 99.48 0.71 -9.18 16 26 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 27 H -0.24 -9.68 6.54 99.48 0.65 -9.03 16 28 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 29 H 0.08 2.40 7.07 -2.39 -0.02 2.39 16 30 H 0.11 2.74 8.14 -2.38 -0.02 2.72 16 31 H 0.17 6.68 5.93 -2.91 -0.02 6.67 16 32 H 0.42 10.69 6.28 -92.71 -0.58 10.11 16 33 H 0.08 1.02 5.57 -2.39 -0.01 1.01 16 34 H 0.10 0.86 8.14 -2.39 -0.02 0.85 16 35 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.10 0.65 8.14 -2.38 -0.02 0.63 16 37 H 0.07 0.74 7.77 -2.39 -0.02 0.72 16 38 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 39 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 40 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.08 1.55 7.03 -2.39 -0.02 1.54 16 43 H 0.05 2.35 7.20 -2.38 -0.02 2.33 16 44 H 0.07 3.07 6.46 -2.39 -0.02 3.05 16 45 H 0.27 15.35 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -78.43 363.87 3.96 -74.47 By element: Atomic # 1 Polarization: 25.38 SS G_CDS: 0.38 Total: 25.76 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: 6.79 Total: 9.63 kcal Atomic # 7 Polarization: -122.16 SS G_CDS: -5.81 Total: -127.96 kcal Atomic # 8 Polarization: -21.65 SS G_CDS: -0.05 Total: -21.70 kcal Atomic # 9 Polarization: -3.65 SS G_CDS: 0.76 Total: -2.89 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 1.88 Total: 42.69 kcal Total: -78.43 3.96 -74.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879078104.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.618 kcal (2) G-P(sol) polarization free energy of solvation -78.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds