Wall clock time and date at job start Tue Mar 31 2020 13:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99722 * 2 1 4 4 H 1.48505 * 109.46818 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46920 * 299.99919 * 3 2 1 6 6 H 1.48497 * 109.47354 * 60.00124 * 3 2 1 7 7 C 1.37874 * 120.00028 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99895 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00205 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47540 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47628 * 179.97438 * 10 9 7 12 12 C 1.50695 * 109.47528 * 180.02562 * 11 10 9 13 13 O 1.21286 * 119.99589 * 0.02562 * 12 11 10 14 14 N 1.34770 * 120.00355 * 179.97438 * 12 11 10 15 15 C 1.46923 * 120.63141 * 359.97438 * 14 12 11 16 16 C 1.53195 * 108.77776 * 126.40957 * 15 14 12 17 17 C 1.53046 * 109.30793 * 54.63922 * 16 15 14 18 18 N 1.46502 * 109.45849 * 178.61391 * 17 16 15 19 19 C 1.46060 * 118.52191 * 239.73255 * 18 17 16 20 20 C 1.53314 * 109.81561 * 160.41976 * 19 18 17 21 21 C 1.53478 * 108.22280 * 48.32615 * 20 19 18 22 22 O 1.45426 * 108.11297 * 298.10109 * 21 20 19 23 23 C 1.33733 * 118.51913 * 59.99781 * 18 17 16 24 24 O 1.21511 * 118.45934 * 2.26637 * 23 18 17 25 25 C 1.53031 * 109.53726 * 298.63346 * 17 16 15 26 26 C 1.46927 * 120.63304 * 180.02562 * 14 12 11 27 27 H 0.97000 * 120.00413 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.47270 * 59.99641 * 9 7 2 29 29 H 1.09004 * 109.46850 * 299.99871 * 9 7 2 30 30 H 1.09001 * 109.47024 * 59.99623 * 10 9 7 31 31 H 1.09000 * 109.47136 * 300.00378 * 10 9 7 32 32 H 1.09001 * 109.47137 * 59.99801 * 11 10 9 33 33 H 1.09004 * 109.46895 * 300.00085 * 11 10 9 34 34 H 1.09009 * 109.58590 * 6.62804 * 15 14 12 35 35 H 1.08995 * 109.59117 * 246.20038 * 15 14 12 36 36 H 1.08990 * 109.49959 * 294.69006 * 16 15 14 37 37 H 1.08999 * 109.49609 * 174.58715 * 16 15 14 38 38 H 1.08995 * 109.46071 * 58.65633 * 17 16 15 39 39 H 1.08998 * 109.39351 * 280.71867 * 19 18 17 40 40 H 1.09007 * 109.39512 * 40.44357 * 19 18 17 41 41 H 1.08994 * 109.89620 * 288.56943 * 20 19 18 42 42 H 1.09006 * 109.64327 * 167.93877 * 20 19 18 43 43 H 1.09005 * 109.73388 * 178.44610 * 21 20 19 44 44 H 1.09006 * 109.77718 * 57.78035 * 21 20 19 45 45 H 1.09004 * 109.49984 * 181.32240 * 25 17 16 46 46 H 1.08998 * 109.50266 * 301.38136 * 25 17 16 47 47 H 1.08993 * 109.58956 * 113.79989 * 26 14 12 48 48 H 1.08999 * 109.70338 * 353.44355 * 26 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 6 2.4596 -6.1325 0.0018 13 8 3.6520 -5.9108 0.0022 14 7 2.0104 -7.4031 0.0030 15 6 0.5690 -7.6876 0.0042 16 6 0.2510 -8.6284 -1.1623 17 6 1.1372 -9.8724 -1.0650 18 7 0.8127 -10.7896 -2.1603 19 6 0.3449 -12.1332 -1.8295 20 6 -0.3840 -12.7409 -3.0336 21 6 0.4918 -12.5377 -4.2774 22 8 0.6521 -11.1078 -4.4888 23 6 0.9632 -10.3608 -3.4181 24 8 1.4026 -9.2426 -3.5999 25 6 2.6082 -9.4618 -1.1628 26 6 2.9529 -8.5303 0.0042 27 1 -0.4851 0.8400 -0.0004 28 1 0.6247 -2.5571 -0.8896 29 1 0.6241 -2.5567 0.8903 30 1 2.8720 -3.6043 0.8905 31 1 2.8720 -3.6043 -0.8894 32 1 0.8534 -5.0451 -0.8886 33 1 0.8540 -5.0446 0.8914 34 1 0.0129 -6.7575 -0.1146 35 1 0.2913 -8.1642 0.9442 36 1 0.4441 -8.1170 -2.1052 37 1 -0.7971 -8.9239 -1.1160 38 1 0.9617 -10.3697 -0.1112 39 1 1.1977 -12.7584 -1.5650 40 1 -0.3396 -12.0799 -0.9828 41 1 -1.3439 -12.2445 -3.1753 42 1 -0.5428 -13.8063 -2.8663 43 1 0.0082 -12.9861 -5.1453 44 1 1.4673 -12.9982 -4.1210 45 1 3.2378 -10.3504 -1.1171 46 1 2.7792 -8.9430 -2.1061 47 1 2.8692 -9.0756 0.9442 48 1 3.9707 -8.1585 -0.1132 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000887710188.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:06 Heat of formation + Delta-G solvation = -146.099646 kcal Electronic energy + Delta-G solvation = -28166.081031 eV Core-core repulsion = 24219.632514 eV Total energy + Delta-G solvation = -3946.448517 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.30897 -41.09125 -39.07535 -37.97947 -36.73071 -36.15556 -34.17417 -33.57304 -32.26056 -31.76863 -29.69239 -27.48245 -26.49370 -25.60087 -24.46629 -24.11397 -22.49266 -21.66660 -20.58755 -20.06680 -18.74145 -18.53956 -18.31164 -17.62882 -17.40487 -16.85219 -16.71980 -16.44622 -16.11263 -15.65512 -15.47479 -15.36385 -15.01504 -14.82947 -14.74088 -14.53592 -14.11302 -13.98159 -13.81439 -13.32215 -13.27872 -13.12717 -12.99599 -12.76167 -12.65485 -12.54777 -12.44240 -12.33958 -12.08406 -11.93848 -11.62839 -11.58594 -11.47865 -11.46875 -11.23382 -11.01795 -10.71541 -10.55565 -9.83613 -9.66233 -8.21042 -6.31039 1.38190 1.38880 1.47108 1.52929 1.62587 1.71015 2.02770 2.41129 2.49398 3.11515 3.56612 3.60884 3.69142 3.71667 3.88494 3.98495 4.06545 4.12340 4.17750 4.21563 4.30387 4.35097 4.39050 4.44248 4.52135 4.61572 4.72712 4.75409 4.76420 4.82307 4.82621 4.93401 4.98798 5.07897 5.08933 5.13521 5.17119 5.23355 5.46837 5.51917 5.53830 5.61333 5.73490 5.84983 6.25731 6.36497 6.75115 6.83814 7.06892 7.18595 7.37377 8.90837 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.024202 B = 0.002241 C = 0.002173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.647370 B =12492.873411 C =12885.208164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.002 3.998 3 Si 0.964 3.036 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.272 1.272 7 C -0.547 4.547 8 H 0.050 0.950 9 C 0.027 3.973 10 C -0.082 4.082 11 C -0.128 4.128 12 C 0.514 3.486 13 O -0.588 6.588 14 N -0.612 5.612 15 C 0.108 3.892 16 C -0.151 4.151 17 C 0.166 3.834 18 N -0.609 5.609 19 C 0.095 3.905 20 C -0.166 4.166 21 C 0.045 3.955 22 O -0.374 6.374 23 C 0.646 3.354 24 O -0.577 6.577 25 C -0.146 4.146 26 C 0.116 3.884 27 H 0.265 0.735 28 H -0.002 1.002 29 H 0.005 0.995 30 H 0.043 0.957 31 H 0.033 0.967 32 H 0.097 0.903 33 H 0.113 0.887 34 H 0.090 0.910 35 H 0.110 0.890 36 H 0.051 0.949 37 H 0.098 0.902 38 H 0.139 0.861 39 H 0.093 0.907 40 H 0.113 0.887 41 H 0.079 0.921 42 H 0.140 0.860 43 H 0.132 0.868 44 H 0.087 0.913 45 H 0.090 0.910 46 H 0.050 0.950 47 H 0.102 0.898 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.182 -37.741 -0.743 38.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.196 4.196 3 Si 0.788 3.212 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.197 1.197 7 C -0.585 4.585 8 H 0.068 0.932 9 C -0.010 4.010 10 C -0.120 4.120 11 C -0.167 4.167 12 C 0.303 3.697 13 O -0.468 6.468 14 N -0.345 5.345 15 C -0.014 4.014 16 C -0.190 4.190 17 C 0.063 3.937 18 N -0.353 5.353 19 C -0.025 4.025 20 C -0.203 4.203 21 C -0.028 4.028 22 O -0.286 6.286 23 C 0.400 3.600 24 O -0.465 6.465 25 C -0.185 4.185 26 C -0.007 4.007 27 H 0.074 0.926 28 H 0.016 0.984 29 H 0.023 0.977 30 H 0.062 0.938 31 H 0.052 0.948 32 H 0.115 0.885 33 H 0.131 0.869 34 H 0.109 0.891 35 H 0.128 0.872 36 H 0.070 0.930 37 H 0.116 0.884 38 H 0.156 0.844 39 H 0.111 0.889 40 H 0.131 0.869 41 H 0.098 0.902 42 H 0.158 0.842 43 H 0.150 0.850 44 H 0.106 0.894 45 H 0.109 0.891 46 H 0.069 0.931 47 H 0.120 0.880 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.549 -37.002 -1.130 37.298 hybrid contribution 0.459 1.191 -0.486 1.366 sum -4.089 -35.811 -1.616 36.080 Atomic orbital electron populations 1.70072 1.07469 1.27757 1.51594 1.25925 0.95884 1.03112 0.94655 0.85423 0.78809 0.78876 0.78095 1.19345 1.20085 1.19746 1.21701 0.93289 0.92807 1.50713 0.93200 1.19009 0.94129 0.92316 0.95515 1.21165 0.97662 0.93079 1.00088 1.21680 0.97995 0.91909 1.05141 1.21089 0.89244 0.84875 0.74446 1.90635 1.19082 1.85117 1.51986 1.48243 1.08628 1.04876 1.72771 1.21979 0.78831 1.00943 0.99685 1.22347 1.00880 0.96514 0.99257 1.21122 0.93215 0.89640 0.89692 1.47484 1.67679 1.16495 1.03684 1.22087 1.00596 0.80310 0.99549 1.22594 0.98921 1.05750 0.93071 1.23921 1.02087 0.74863 1.01901 1.86693 1.83791 1.24185 1.33899 1.18118 0.77124 0.84148 0.80563 1.90975 1.49780 1.20437 1.85321 1.22307 0.97254 0.99962 0.98961 1.21595 0.93424 0.86442 0.99207 0.92612 0.98411 0.97661 0.93793 0.94788 0.88511 0.86911 0.89130 0.87197 0.93043 0.88406 0.84375 0.88919 0.86851 0.90249 0.84228 0.85031 0.89425 0.89135 0.93144 0.87959 0.91697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.83 13.29 21.45 0.28 -57.55 16 2 C 0.00 0.13 5.46 84.65 0.46 0.59 16 3 Si 0.96 46.69 29.54 68.60 2.03 48.72 16 4 H -0.27 -12.79 7.11 99.48 0.71 -12.09 16 5 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 6 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 7 C -0.55 -33.54 9.11 25.60 0.23 -33.31 16 8 H 0.05 3.04 7.74 -2.91 -0.02 3.02 16 9 C 0.03 1.53 4.97 29.85 0.15 1.68 16 10 C -0.08 -3.91 4.44 30.59 0.14 -3.77 16 11 C -0.13 -4.67 4.05 29.84 0.12 -4.55 16 12 C 0.51 18.64 7.70 87.66 0.67 19.32 16 13 O -0.59 -26.50 15.40 -3.05 -0.05 -26.55 16 14 N -0.61 -16.05 2.97 -818.83 -2.43 -18.48 16 15 C 0.11 1.93 6.34 86.36 0.55 2.48 16 16 C -0.15 -2.71 5.24 30.67 0.16 -2.55 16 17 C 0.17 2.28 2.46 45.02 0.11 2.39 16 18 N -0.61 -8.14 2.79 -931.23 -2.60 -10.74 16 19 C 0.10 0.24 6.38 86.57 0.55 0.79 16 20 C -0.17 -0.19 6.28 30.86 0.19 0.00 16 21 C 0.05 0.30 7.20 72.14 0.52 0.82 16 22 O -0.37 -7.68 10.50 -51.15 -0.54 -8.22 16 23 C 0.65 15.12 7.73 129.95 1.00 16.12 16 24 O -0.58 -19.80 12.81 19.93 0.26 -19.54 16 25 C -0.15 -2.90 5.24 30.69 0.16 -2.74 16 26 C 0.12 2.54 6.43 86.38 0.56 3.10 16 27 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 28 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 29 H 0.01 0.29 8.14 -2.38 -0.02 0.27 16 30 H 0.04 2.15 8.10 -2.39 -0.02 2.13 16 31 H 0.03 1.72 8.10 -2.39 -0.02 1.70 16 32 H 0.10 3.36 7.69 -2.39 -0.02 3.34 16 33 H 0.11 3.52 7.94 -2.38 -0.02 3.50 16 34 H 0.09 1.74 5.93 -2.38 -0.01 1.73 16 35 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.05 1.45 6.10 -2.39 -0.01 1.43 16 37 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.14 0.72 7.82 -2.39 -0.02 0.70 16 39 H 0.09 -0.07 8.14 -2.39 -0.02 -0.09 16 40 H 0.11 -0.22 8.06 -2.38 -0.02 -0.24 16 41 H 0.08 0.27 8.14 -2.39 -0.02 0.25 16 42 H 0.14 -0.79 8.14 -2.38 -0.02 -0.81 16 43 H 0.13 0.33 8.14 -2.38 -0.02 0.31 16 44 H 0.09 0.37 8.14 -2.38 -0.02 0.36 16 45 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 46 H 0.05 1.54 5.94 -2.39 -0.01 1.52 16 47 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 48 H 0.06 1.84 7.01 -2.39 -0.02 1.82 16 Total: -1.00 -90.99 375.95 3.47 -87.52 By element: Atomic # 1 Polarization: 3.51 SS G_CDS: 0.94 Total: 4.45 kcal Atomic # 6 Polarization: -5.20 SS G_CDS: 5.58 Total: 0.38 kcal Atomic # 7 Polarization: -82.02 SS G_CDS: -4.75 Total: -86.77 kcal Atomic # 8 Polarization: -53.98 SS G_CDS: -0.33 Total: -54.31 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.72 kcal Total: -90.99 3.47 -87.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887710188.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.575 kcal (2) G-P(sol) polarization free energy of solvation -90.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds