Wall clock time and date at job start Tue Mar 31 2020 14:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50695 * 109.47014 * 2 1 4 4 N 1.34634 * 125.89702 * 265.30994 * 3 2 1 5 5 H 0.96994 * 124.80428 * 359.97438 * 4 3 2 6 6 C 1.36427 * 110.37922 * 180.14451 * 4 3 2 7 7 C 1.50700 * 125.45471 * 179.85566 * 6 4 3 8 8 N 1.46899 * 109.46981 * 272.55109 * 7 6 4 9 9 C 1.46899 * 111.00277 * 171.50726 * 8 7 6 10 10 C 1.50700 * 109.47499 * 189.99861 * 9 8 7 11 11 H 1.08002 * 119.99854 * 0.02562 * 10 9 8 12 12 C 1.37873 * 119.99914 * 179.97438 * 10 9 8 13 13 N 1.31512 * 120.00425 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 119.99963 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47045 * 90.00181 * 14 12 10 16 16 H 1.48492 * 109.47408 * 210.00427 * 14 12 10 17 17 H 1.48510 * 109.46940 * 330.00465 * 14 12 10 18 18 C 1.46891 * 111.00264 * 295.46586 * 8 7 6 19 19 C 1.52998 * 109.47222 * 292.60623 * 18 8 7 20 20 O 1.42906 * 109.47208 * 68.69675 * 19 18 8 21 21 C 1.42896 * 114.00191 * 180.02562 * 20 19 18 22 22 C 1.34431 * 109.08749 * 359.58372 * 6 4 3 23 23 C 1.37845 * 125.89875 * 84.99706 * 3 2 1 24 24 C 1.47109 * 127.02503 * 359.97438 * 23 3 2 25 25 O 1.21555 * 119.99790 * 0.02562 * 24 23 3 26 26 O 1.34778 * 120.00499 * 180.02562 * 24 23 3 27 27 C 1.45199 * 117.00326 * 179.97438 * 26 24 23 28 28 H 1.08993 * 109.46868 * 60.00158 * 1 2 3 29 29 H 1.09001 * 109.46783 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46701 * 300.00043 * 1 2 3 31 31 H 1.08999 * 109.47066 * 239.99561 * 2 1 3 32 32 H 1.09003 * 109.47033 * 119.99872 * 2 1 3 33 33 H 1.09001 * 109.47294 * 152.55392 * 7 6 4 34 34 H 1.09003 * 109.47316 * 32.54739 * 7 6 4 35 35 H 1.08995 * 109.47440 * 310.00453 * 9 8 7 36 36 H 1.09005 * 109.46785 * 70.00196 * 9 8 7 37 37 H 0.97003 * 120.00176 * 179.97438 * 13 12 10 38 38 H 1.09001 * 109.47484 * 52.60345 * 18 8 7 39 39 H 1.09005 * 109.47736 * 172.60383 * 18 8 7 40 40 H 1.09005 * 109.47747 * 188.69415 * 19 18 8 41 41 H 1.08999 * 109.47069 * 308.70303 * 19 18 8 42 42 H 1.09006 * 109.47138 * 59.99985 * 21 20 19 43 43 H 1.09000 * 109.47004 * 179.97438 * 21 20 19 44 44 H 1.08997 * 109.47570 * 300.00372 * 21 20 19 45 45 H 1.08001 * 126.81096 * 180.20800 * 22 6 4 46 46 H 1.09001 * 109.47602 * 300.00309 * 27 26 24 47 47 H 1.09003 * 109.47160 * 60.00706 * 27 26 24 48 48 H 1.09004 * 109.47479 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3796 2.1353 -1.0870 5 1 2.3436 1.8080 -1.9993 6 6 2.7926 3.3836 -0.7229 7 6 3.2598 4.4601 -1.6684 8 7 4.7011 4.3088 -1.9089 9 6 5.1542 5.2103 -2.9765 10 6 6.5676 4.8596 -3.3641 11 1 7.0782 4.0478 -2.8673 12 6 7.2086 5.5743 -4.3536 13 7 6.5868 6.5625 -4.9590 14 14 8.9604 5.1391 -4.8346 15 1 8.9385 4.1292 -5.9231 16 1 9.6622 6.3599 -5.3060 17 1 9.6732 4.5821 -3.6568 18 6 5.4666 4.5280 -0.6745 19 6 5.3492 5.9948 -0.2553 20 8 4.0107 6.2639 0.1669 21 6 3.7922 7.6139 0.5811 22 6 2.7104 3.5014 0.6137 23 6 2.2100 2.2153 1.1124 24 6 1.9499 1.8490 2.5132 25 8 1.5326 0.7399 2.7840 26 8 2.1742 2.7432 3.4964 27 6 1.8949 2.3132 4.8549 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 3.0655 5.4387 -1.2294 34 1 2.7227 4.3724 -2.6129 35 1 4.5025 5.1032 -3.8435 36 1 5.1198 6.2403 -2.6212 37 1 7.0380 7.0656 -5.6549 38 1 5.0707 3.8913 0.1166 39 1 6.5144 4.2826 -0.8482 40 1 6.0364 6.1938 0.5671 41 1 5.5991 6.6355 -1.1009 42 1 4.0098 8.2880 -0.2474 43 1 2.7529 7.7368 0.8857 44 1 4.4472 7.8470 1.4206 45 1 2.9633 4.3701 1.2035 46 1 0.8429 2.0411 4.9409 47 1 2.5145 1.4498 5.0973 48 1 2.1173 3.1260 5.5463 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894003746.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:24 Heat of formation + Delta-G solvation = -85.087593 kcal Electronic energy + Delta-G solvation = -28717.874202 eV Core-core repulsion = 24774.071366 eV Total energy + Delta-G solvation = -3943.802836 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.19375 -39.68813 -38.21503 -36.21006 -35.83966 -33.63351 -32.55705 -31.05967 -29.86039 -28.77500 -27.68085 -26.62586 -26.05306 -24.22127 -23.73012 -22.98880 -21.85309 -20.19276 -19.61233 -19.41605 -17.22026 -16.50879 -16.19210 -16.15280 -16.03374 -15.96584 -15.73825 -15.00937 -14.58805 -14.42647 -14.14437 -14.03516 -13.63564 -13.39377 -13.29712 -13.01136 -12.89085 -12.52974 -12.16970 -12.11514 -11.96946 -11.71931 -11.53133 -11.42403 -11.33023 -11.24931 -11.02906 -10.91129 -10.70100 -10.67756 -10.64415 -10.34384 -10.21197 -9.89587 -9.31982 -9.00963 -8.60266 -8.47540 -7.82448 -7.15126 -6.08141 -4.09669 1.66413 2.68557 2.87890 3.27911 3.34611 3.37719 3.50083 3.53299 4.20587 4.38741 4.76278 5.00432 5.03635 5.10984 5.17173 5.19239 5.28021 5.29337 5.39183 5.51170 5.54378 5.55652 5.59302 5.61556 5.79459 5.85325 5.88600 5.90142 5.95645 6.01182 6.05238 6.14711 6.23648 6.36758 6.39378 6.54286 6.68241 6.75110 7.06810 7.20547 7.33397 7.34321 7.56813 7.66686 7.76172 8.03710 8.08604 8.17558 8.49718 8.98552 9.55089 11.02176 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.014425 B = 0.003402 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.658016 B = 8227.728205 C = 9213.695180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.063 4.063 3 C 0.114 3.886 4 N -0.531 5.531 5 H 0.417 0.583 6 C 0.046 3.954 7 C 0.102 3.898 8 N -0.530 5.530 9 C 0.188 3.812 10 C -0.507 4.507 11 H 0.062 0.938 12 C 0.056 3.944 13 N -0.898 5.898 14 Si 0.895 3.105 15 H -0.281 1.281 16 H -0.288 1.288 17 H -0.274 1.274 18 C 0.067 3.933 19 C 0.019 3.981 20 O -0.382 6.382 21 C 0.028 3.972 22 C -0.135 4.135 23 C -0.237 4.237 24 C 0.544 3.456 25 O -0.530 6.530 26 O -0.354 6.354 27 C 0.039 3.961 28 H 0.050 0.950 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.099 0.901 33 H 0.088 0.912 34 H 0.065 0.935 35 H 0.027 0.973 36 H 0.001 0.999 37 H 0.261 0.739 38 H 0.070 0.930 39 H 0.090 0.910 40 H 0.039 0.961 41 H 0.071 0.929 42 H 0.038 0.962 43 H 0.078 0.922 44 H 0.034 0.966 45 H 0.154 0.846 46 H 0.058 0.942 47 H 0.059 0.941 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.524 -5.721 13.389 17.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.101 4.101 3 C -0.006 4.006 4 N -0.125 5.125 5 H 0.254 0.746 6 C -0.064 4.064 7 C -0.027 4.027 8 N -0.253 5.253 9 C 0.064 3.936 10 C -0.545 4.545 11 H 0.081 0.919 12 C -0.145 4.145 13 N -0.538 5.538 14 Si 0.723 3.277 15 H -0.207 1.207 16 H -0.214 1.214 17 H -0.198 1.198 18 C -0.062 4.062 19 C -0.059 4.059 20 O -0.301 6.301 21 C -0.068 4.068 22 C -0.159 4.159 23 C -0.246 4.246 24 C 0.392 3.608 25 O -0.422 6.422 26 O -0.270 6.270 27 C -0.055 4.055 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.117 0.883 33 H 0.106 0.894 34 H 0.084 0.916 35 H 0.045 0.955 36 H 0.019 0.981 37 H 0.071 0.929 38 H 0.088 0.912 39 H 0.109 0.891 40 H 0.057 0.943 41 H 0.089 0.911 42 H 0.056 0.944 43 H 0.097 0.903 44 H 0.053 0.947 45 H 0.172 0.828 46 H 0.077 0.923 47 H 0.078 0.922 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -10.655 -6.506 13.042 18.054 hybrid contribution 1.092 0.793 -0.362 1.397 sum -9.562 -5.713 12.680 16.878 Atomic orbital electron populations 1.21656 0.94185 1.01809 1.02111 1.20278 0.96517 0.89353 1.03910 1.20407 1.00402 0.94121 0.85701 1.41603 1.50419 1.11828 1.08645 0.74563 1.20390 1.04620 0.86293 0.95065 1.20963 0.90894 0.94971 0.95829 1.62314 1.00493 1.55447 1.07062 1.19810 0.96008 0.89715 0.88091 1.21152 0.97944 1.16140 1.19311 0.91939 1.24966 0.98192 0.95078 0.96254 1.69952 1.37382 1.20984 1.25443 0.86539 0.84510 0.77746 0.78858 1.20687 1.21362 1.19847 1.22181 1.00097 0.91717 0.92221 1.23513 0.82775 1.00960 0.98616 1.87919 1.29792 1.27421 1.84960 1.22675 1.01150 0.84791 0.98219 1.21942 1.04391 0.96834 0.92688 1.19267 1.19553 0.97443 0.88340 1.20216 0.73373 0.81818 0.85417 1.90769 1.44631 1.22351 1.84454 1.86610 1.79559 1.44169 1.16652 1.23166 1.01347 1.01310 0.79723 0.93093 0.92172 0.92009 0.91159 0.88296 0.89416 0.91628 0.95455 0.98096 0.92931 0.91165 0.89144 0.94251 0.91144 0.94356 0.90326 0.94728 0.82831 0.92290 0.92224 0.88497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.90 37.16 0.37 -1.08 16 2 C -0.06 -0.71 5.81 -27.88 -0.16 -0.88 16 3 C 0.11 1.58 6.47 -81.51 -0.53 1.05 16 4 N -0.53 -7.30 5.89 -5.20 -0.03 -7.33 16 5 H 0.42 4.87 8.96 -40.82 -0.37 4.50 16 6 C 0.05 0.72 5.91 -81.89 -0.48 0.24 16 7 C 0.10 1.77 5.09 -4.98 -0.03 1.74 16 8 N -0.53 -10.67 4.70 -237.52 -1.12 -11.79 16 9 C 0.19 4.57 4.43 -4.98 -0.02 4.55 16 10 C -0.51 -13.46 8.56 -34.44 -0.29 -13.76 16 11 H 0.06 1.66 7.10 -52.49 -0.37 1.29 16 12 C 0.06 1.53 5.46 -17.82 -0.10 1.44 16 13 N -0.90 -25.64 13.29 55.43 0.74 -24.91 16 14 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 15 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 16 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 17 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 18 C 0.07 1.25 5.46 -3.83 -0.02 1.22 16 19 C 0.02 0.33 5.75 37.16 0.21 0.54 16 20 O -0.38 -6.11 5.99 -35.23 -0.21 -6.32 16 21 C 0.03 0.37 11.01 101.05 1.11 1.48 16 22 C -0.14 -2.15 9.16 -37.49 -0.34 -2.50 16 23 C -0.24 -3.69 6.33 -103.01 -0.65 -4.34 16 24 C 0.54 8.40 7.95 34.33 0.27 8.67 16 25 O -0.53 -8.55 14.66 -19.31 -0.28 -8.83 16 26 O -0.35 -4.97 10.47 -40.70 -0.43 -5.39 16 27 C 0.04 0.38 10.57 101.05 1.07 1.45 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.74 8.01 -51.93 -0.42 0.32 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.10 1.24 6.79 -51.93 -0.35 0.89 16 33 H 0.09 1.57 5.04 -51.93 -0.26 1.31 16 34 H 0.07 1.12 7.96 -51.93 -0.41 0.71 16 35 H 0.03 0.72 7.95 -51.93 -0.41 0.31 16 36 H 0.00 0.04 5.74 -51.93 -0.30 -0.26 16 37 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 38 H 0.07 1.26 5.97 -51.93 -0.31 0.95 16 39 H 0.09 1.80 6.96 -51.93 -0.36 1.44 16 40 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.07 1.43 5.77 -51.93 -0.30 1.13 16 42 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 44 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 45 H 0.15 2.48 6.80 -52.49 -0.36 2.13 16 46 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 386.49 15.07 5.82 5.82 Total: -1.00 -30.45 386.49 -7.71 -38.15 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -7.58 Total: 4.78 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: 0.41 Total: -0.15 kcal Atomic # 7 Polarization: -43.62 SS G_CDS: -0.41 Total: -44.03 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: -0.92 Total: -20.54 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -30.45 -7.71 -38.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894003746.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.933 kcal (2) G-P(sol) polarization free energy of solvation -30.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds