Wall clock time and date at job start Tue Mar 31 2020 14:34:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30374 * 125.96943 * 2 1 4 4 N 1.39919 * 109.02369 * 180.17839 * 3 2 1 5 5 C 1.46502 * 125.74242 * 179.80424 * 4 3 2 6 6 C 1.34418 * 108.51090 * 359.54328 * 4 3 2 7 7 F 1.35099 * 126.33917 * 180.29726 * 6 4 3 8 8 C 1.38498 * 107.31333 * 0.26515 * 6 4 3 9 9 C 1.47167 * 126.45660 * 180.02562 * 8 6 4 10 10 O 1.21628 * 120.00128 * 89.97631 * 9 8 6 11 11 N 1.34779 * 119.99371 * 269.96859 * 9 8 6 12 12 C 1.46509 * 119.99429 * 180.02562 * 11 9 8 13 13 H 1.09000 * 109.45883 * 324.97032 * 12 11 9 14 14 C 1.53039 * 109.45994 * 84.93727 * 12 11 9 15 15 C 1.53189 * 109.31034 * 181.38510 * 14 12 11 16 16 N 1.46930 * 108.77688 * 305.36042 * 15 14 12 17 17 C 1.36931 * 120.63099 * 233.63133 * 16 15 14 18 18 H 1.07998 * 119.99625 * 150.86017 * 17 16 15 19 19 C 1.38810 * 120.00130 * 330.86339 * 17 16 15 20 20 N 1.31623 * 119.99901 * 160.75973 * 19 17 16 21 21 Si 1.86796 * 120.00144 * 340.75932 * 19 17 16 22 22 H 1.48492 * 109.47438 * 92.25640 * 21 19 17 23 23 H 1.48509 * 109.47109 * 212.25716 * 21 19 17 24 24 H 1.48500 * 109.46904 * 332.25209 * 21 19 17 25 25 C 1.46929 * 118.73387 * 53.60993 * 16 15 14 26 26 H 1.09004 * 109.58344 * 66.18427 * 25 16 15 27 27 C 1.53001 * 109.58164 * 186.60374 * 25 16 15 28 28 C 1.53037 * 109.45772 * 205.00327 * 12 11 9 29 29 H 1.09000 * 109.47082 * 270.31448 * 1 2 3 30 30 H 1.09003 * 109.47185 * 30.31331 * 1 2 3 31 31 H 1.08994 * 109.46989 * 150.31240 * 1 2 3 32 32 H 1.09001 * 109.47355 * 269.69311 * 5 4 3 33 33 H 1.08997 * 109.46923 * 149.69281 * 5 4 3 34 34 H 1.09004 * 109.47079 * 29.69462 * 5 4 3 35 35 H 0.97000 * 120.00373 * 0.02562 * 11 9 8 36 36 H 1.09007 * 109.49640 * 301.33223 * 14 12 11 37 37 H 1.09000 * 109.49875 * 61.43058 * 14 12 11 38 38 H 1.09000 * 109.58820 * 185.57286 * 15 14 12 39 39 H 1.08999 * 109.70786 * 65.22027 * 15 14 12 40 40 H 0.97000 * 119.99831 * 180.02562 * 20 19 17 41 41 H 1.08999 * 109.47069 * 179.29108 * 27 25 16 42 42 H 1.09003 * 109.47399 * 299.28764 * 27 25 16 43 43 H 1.08998 * 109.47198 * 59.29029 * 27 25 16 44 44 H 1.09000 * 109.50177 * 298.56406 * 28 12 11 45 45 H 1.09003 * 109.50276 * 58.63042 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2728 1.0552 0.0000 4 7 3.6112 0.6473 -0.0041 5 6 4.7764 1.5354 -0.0095 6 6 3.6479 -0.6963 0.0035 7 9 4.7577 -1.4668 0.0082 8 6 2.3375 -1.1445 0.0063 9 6 1.8930 -2.5474 0.0149 10 8 1.7099 -3.1209 1.0717 11 7 1.6889 -3.1966 -1.1484 12 6 1.2459 -4.5931 -1.1399 13 1 1.6988 -5.1125 -0.2954 14 6 -0.2783 -4.6437 -1.0117 15 6 -0.7347 -6.1054 -0.9683 16 7 -0.2050 -6.8015 -2.1489 17 6 -1.0408 -7.4940 -2.9838 18 1 -0.7950 -7.5963 -4.0305 19 6 -2.2038 -8.0643 -2.4850 20 7 -3.1805 -8.3911 -3.3046 21 14 -2.3828 -8.3681 -0.6506 22 1 -3.0379 -7.1961 -0.0163 23 1 -3.2125 -9.5795 -0.4281 24 1 -1.0402 -8.5704 -0.0491 25 6 1.2383 -6.7400 -2.4167 26 1 1.7787 -7.2665 -1.6299 27 6 1.5368 -7.3883 -3.7701 28 6 1.6726 -5.2713 -2.4438 29 1 -0.3633 0.0056 1.0276 30 1 -0.3634 0.8872 -0.5187 31 1 -0.3633 -0.8927 -0.5089 32 1 5.0651 1.7498 -1.0385 33 1 5.6049 1.0507 0.5069 34 1 4.5260 2.4664 0.4991 35 1 1.8352 -2.7393 -1.9913 36 1 -0.5831 -4.1400 -0.0943 37 1 -0.7322 -4.1461 -1.8687 38 1 -1.8238 -6.1486 -0.9767 39 1 -0.3572 -6.5817 -0.0634 40 1 -3.9934 -8.7893 -2.9559 41 1 2.6063 -7.3305 -3.9726 42 1 1.2271 -8.4332 -3.7487 43 1 0.9898 -6.8631 -4.5530 44 1 1.2003 -4.7678 -3.2873 45 1 2.7563 -5.2137 -2.5462 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947983514.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:52 Heat of formation + Delta-G solvation = 23.884620 kcal Electronic energy + Delta-G solvation = -28222.868362 eV Core-core repulsion = 24192.623362 eV Total energy + Delta-G solvation = -4030.245000 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.170 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.61963 -41.67494 -39.55572 -37.81097 -34.65829 -34.52261 -32.38110 -31.76455 -30.84628 -30.13609 -29.48893 -26.70418 -26.32826 -24.66176 -22.99784 -22.50410 -21.15336 -20.71248 -20.18582 -19.40643 -18.16805 -17.22441 -16.99288 -16.44053 -16.28968 -16.00494 -15.21061 -15.04757 -14.59388 -14.48384 -14.34640 -13.92193 -13.75320 -13.71415 -13.65354 -13.35820 -13.14515 -12.91426 -12.68488 -12.49968 -12.43096 -11.94550 -11.81600 -11.33715 -11.23475 -11.14735 -10.96527 -10.58481 -10.37363 -10.17212 -10.09297 -9.96305 -9.68178 -9.65027 -9.38690 -9.03214 -8.80954 -8.56992 -6.91873 -5.90927 -3.28622 1.03804 1.56417 1.96758 2.54213 3.30217 3.37761 3.51578 3.53514 3.57451 4.01177 4.42293 4.57601 4.59460 4.73970 4.83958 4.87983 4.91109 4.97163 5.20457 5.32486 5.37185 5.42404 5.46784 5.56595 5.65189 5.78766 6.00590 6.03715 6.07377 6.12791 6.23149 6.28742 6.32745 6.39829 6.44423 6.52197 6.67215 6.72833 6.82872 6.97749 7.03190 7.07315 7.60972 8.01238 8.28824 8.38577 8.97711 9.76610 10.14269 11.24660 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.021493 B = 0.003142 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.427572 B = 8910.071916 C = 9486.522046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.135 3.865 3 N -0.272 5.272 4 N -0.376 5.376 5 C 0.093 3.907 6 C 0.292 3.708 7 F -0.088 7.088 8 C -0.286 4.286 9 C 0.595 3.405 10 O -0.528 6.528 11 N -0.712 5.712 12 C 0.150 3.850 13 H 0.084 0.916 14 C -0.140 4.140 15 C 0.129 3.871 16 N -0.603 5.603 17 C -0.258 4.258 18 H 0.092 0.908 19 C 0.024 3.976 20 N -0.911 5.911 21 Si 0.880 3.120 22 H -0.288 1.288 23 H -0.305 1.305 24 H -0.270 1.270 25 C 0.176 3.824 26 H 0.032 0.968 27 C -0.136 4.136 28 C -0.136 4.136 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.100 0.900 35 H 0.398 0.602 36 H 0.059 0.941 37 H 0.066 0.934 38 H 0.075 0.925 39 H 0.027 0.973 40 H 0.262 0.738 41 H 0.040 0.960 42 H 0.065 0.935 43 H 0.058 0.942 44 H 0.069 0.931 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.229 19.877 4.046 25.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.032 4.032 3 N -0.095 5.095 4 N -0.161 5.161 5 C -0.048 4.048 6 C 0.145 3.855 7 F -0.067 7.067 8 C -0.302 4.302 9 C 0.378 3.622 10 O -0.404 6.404 11 N -0.362 5.362 12 C 0.046 3.954 13 H 0.102 0.898 14 C -0.181 4.181 15 C 0.003 3.997 16 N -0.327 5.327 17 C -0.386 4.386 18 H 0.109 0.891 19 C -0.175 4.175 20 N -0.554 5.554 21 Si 0.711 3.289 22 H -0.216 1.216 23 H -0.233 1.233 24 H -0.195 1.195 25 C 0.069 3.931 26 H 0.049 0.951 27 C -0.193 4.193 28 C -0.175 4.175 29 H 0.106 0.894 30 H 0.102 0.898 31 H 0.104 0.896 32 H 0.103 0.897 33 H 0.110 0.890 34 H 0.119 0.881 35 H 0.232 0.768 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.093 0.907 39 H 0.045 0.955 40 H 0.072 0.928 41 H 0.059 0.941 42 H 0.084 0.916 43 H 0.077 0.923 44 H 0.087 0.913 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 15.161 20.667 4.766 26.071 hybrid contribution 0.354 -0.846 0.702 1.155 sum 15.515 19.822 5.468 25.759 Atomic orbital electron populations 1.20359 0.84974 1.04339 1.04220 1.22241 0.97284 0.87928 0.95719 1.77321 0.84072 1.21152 1.26954 1.48678 1.07334 1.02576 1.57502 1.22066 0.83646 0.94692 1.04346 1.17789 0.83355 0.81836 1.02565 1.91665 1.49684 1.71573 1.93804 1.19802 0.90287 0.95925 1.24229 1.17016 0.77133 0.83772 0.84239 1.90816 1.51016 1.67572 1.30983 1.46275 1.67948 1.14068 1.07906 1.21051 0.95309 0.79626 0.99394 0.89838 1.22394 0.94447 0.99735 1.01488 1.21319 0.98841 0.89721 0.89852 1.44493 1.01804 1.58131 1.28303 1.18921 1.01076 1.27003 0.91626 0.89091 1.25312 0.96670 0.98377 0.97098 1.69818 1.05455 1.45634 1.34476 0.86991 0.77721 0.76640 0.87561 1.21580 1.23287 1.19496 1.20371 0.85400 0.91338 0.96037 0.95051 1.21800 0.98572 1.02073 0.96879 1.22383 0.99828 0.99015 0.96316 0.89351 0.89820 0.89554 0.89749 0.89047 0.88129 0.76807 0.92267 0.91487 0.90677 0.95517 0.92837 0.94098 0.91599 0.92305 0.91253 0.92198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.74 10.28 36.01 0.37 -0.37 16 2 C 0.13 1.56 7.26 -82.01 -0.60 0.96 16 3 N -0.27 -3.08 12.49 33.91 0.42 -2.65 16 4 N -0.38 -3.70 3.98 -67.94 -0.27 -3.97 16 5 C 0.09 0.46 11.43 59.85 0.68 1.15 16 6 C 0.29 3.37 8.70 -16.32 -0.14 3.23 16 7 F -0.09 -0.99 17.31 2.25 0.04 -0.95 16 8 C -0.29 -3.69 5.89 -104.97 -0.62 -4.31 16 9 C 0.60 8.98 7.32 -12.63 -0.09 8.89 16 10 O -0.53 -10.05 16.77 5.25 0.09 -9.96 16 11 N -0.71 -9.69 5.07 -54.92 -0.28 -9.96 16 12 C 0.15 2.42 2.42 -67.89 -0.16 2.25 16 13 H 0.08 1.50 7.58 -51.93 -0.39 1.11 16 14 C -0.14 -2.55 5.65 -26.61 -0.15 -2.70 16 15 C 0.13 2.83 4.20 -3.71 -0.02 2.82 16 16 N -0.60 -13.90 2.75 -164.78 -0.45 -14.36 16 17 C -0.26 -6.95 9.05 -15.06 -0.14 -7.09 16 18 H 0.09 2.57 6.38 -52.49 -0.34 2.24 16 19 C 0.02 0.69 5.24 -17.43 -0.09 0.60 16 20 N -0.91 -27.64 13.97 55.49 0.78 -26.86 16 21 Si 0.88 22.55 24.34 -169.99 -4.14 18.41 16 22 H -0.29 -7.18 6.62 56.52 0.37 -6.81 16 23 H -0.30 -7.97 7.11 56.52 0.40 -7.57 16 24 H -0.27 -6.85 6.63 56.52 0.37 -6.48 16 25 C 0.18 3.33 3.50 -67.60 -0.24 3.09 16 26 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 27 C -0.14 -2.40 7.95 37.16 0.30 -2.11 16 28 C -0.14 -2.11 4.84 -26.62 -0.13 -2.23 16 29 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.09 0.81 8.01 -51.93 -0.42 0.40 16 32 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.40 4.43 8.59 -40.82 -0.35 4.08 16 36 H 0.06 1.06 8.14 -51.92 -0.42 0.63 16 37 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 38 H 0.08 1.81 4.62 -51.93 -0.24 1.57 16 39 H 0.03 0.60 7.02 -51.93 -0.36 0.24 16 40 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 41 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.06 1.28 7.66 -51.93 -0.40 0.88 16 43 H 0.06 1.08 7.40 -51.93 -0.38 0.70 16 44 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 45 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 365.89 15.07 5.51 5.51 Total: -1.00 -33.89 365.89 -6.04 -39.93 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -6.72 Total: 0.68 kcal Atomic # 6 Polarization: 5.20 SS G_CDS: -1.02 Total: 4.18 kcal Atomic # 7 Polarization: -58.00 SS G_CDS: 0.20 Total: -57.81 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.09 Total: -9.96 kcal Atomic # 9 Polarization: -0.99 SS G_CDS: 0.04 Total: -0.95 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -4.14 Total: 18.41 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.89 -6.04 -39.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947983514.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.813 kcal (2) G-P(sol) polarization free energy of solvation -33.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds