Wall clock time and date at job start Tue Mar 31 2020 14:34:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30374 * 125.96943 * 2 1 4 4 N 1.39919 * 109.02369 * 180.17839 * 3 2 1 5 5 C 1.46502 * 125.74242 * 179.80424 * 4 3 2 6 6 C 1.34418 * 108.51090 * 359.54328 * 4 3 2 7 7 F 1.35099 * 126.33917 * 180.29726 * 6 4 3 8 8 C 1.38498 * 107.31333 * 0.26515 * 6 4 3 9 9 C 1.47167 * 126.45660 * 180.02562 * 8 6 4 10 10 O 1.21628 * 120.00128 * 89.97631 * 9 8 6 11 11 N 1.34779 * 119.99371 * 269.96859 * 9 8 6 12 12 C 1.46509 * 119.99429 * 180.02562 * 11 9 8 13 13 H 1.09000 * 109.45883 * 324.97032 * 12 11 9 14 14 C 1.53039 * 109.45994 * 84.93727 * 12 11 9 15 15 C 1.53189 * 109.31034 * 181.38510 * 14 12 11 16 16 N 1.46930 * 108.77688 * 305.36042 * 15 14 12 17 17 C 1.36931 * 120.63099 * 233.63133 * 16 15 14 18 18 H 1.07998 * 119.99625 * 150.86017 * 17 16 15 19 19 C 1.38810 * 120.00130 * 330.86339 * 17 16 15 20 20 N 1.31623 * 119.99901 * 160.75973 * 19 17 16 21 21 Si 1.86796 * 120.00144 * 340.75932 * 19 17 16 22 22 H 1.48492 * 109.47438 * 92.25640 * 21 19 17 23 23 H 1.48509 * 109.47109 * 212.25716 * 21 19 17 24 24 H 1.48500 * 109.46904 * 332.25209 * 21 19 17 25 25 C 1.46929 * 118.73387 * 53.60993 * 16 15 14 26 26 H 1.09004 * 109.58344 * 66.18427 * 25 16 15 27 27 C 1.53001 * 109.58164 * 186.60374 * 25 16 15 28 28 C 1.53037 * 109.45772 * 205.00327 * 12 11 9 29 29 H 1.09000 * 109.47082 * 270.31448 * 1 2 3 30 30 H 1.09003 * 109.47185 * 30.31331 * 1 2 3 31 31 H 1.08994 * 109.46989 * 150.31240 * 1 2 3 32 32 H 1.09001 * 109.47355 * 269.69311 * 5 4 3 33 33 H 1.08997 * 109.46923 * 149.69281 * 5 4 3 34 34 H 1.09004 * 109.47079 * 29.69462 * 5 4 3 35 35 H 0.97000 * 120.00373 * 0.02562 * 11 9 8 36 36 H 1.09007 * 109.49640 * 301.33223 * 14 12 11 37 37 H 1.09000 * 109.49875 * 61.43058 * 14 12 11 38 38 H 1.09000 * 109.58820 * 185.57286 * 15 14 12 39 39 H 1.08999 * 109.70786 * 65.22027 * 15 14 12 40 40 H 0.97000 * 119.99831 * 180.02562 * 20 19 17 41 41 H 1.08999 * 109.47069 * 179.29108 * 27 25 16 42 42 H 1.09003 * 109.47399 * 299.28764 * 27 25 16 43 43 H 1.08998 * 109.47198 * 59.29029 * 27 25 16 44 44 H 1.09000 * 109.50177 * 298.56406 * 28 12 11 45 45 H 1.09003 * 109.50276 * 58.63042 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2728 1.0552 0.0000 4 7 3.6112 0.6473 -0.0041 5 6 4.7764 1.5354 -0.0095 6 6 3.6479 -0.6963 0.0035 7 9 4.7577 -1.4668 0.0082 8 6 2.3375 -1.1445 0.0063 9 6 1.8930 -2.5474 0.0149 10 8 1.7099 -3.1209 1.0717 11 7 1.6889 -3.1966 -1.1484 12 6 1.2459 -4.5931 -1.1399 13 1 1.6988 -5.1125 -0.2954 14 6 -0.2783 -4.6437 -1.0117 15 6 -0.7347 -6.1054 -0.9683 16 7 -0.2050 -6.8015 -2.1489 17 6 -1.0408 -7.4940 -2.9838 18 1 -0.7950 -7.5963 -4.0305 19 6 -2.2038 -8.0643 -2.4850 20 7 -3.1805 -8.3911 -3.3046 21 14 -2.3828 -8.3681 -0.6506 22 1 -3.0379 -7.1961 -0.0163 23 1 -3.2125 -9.5795 -0.4281 24 1 -1.0402 -8.5704 -0.0491 25 6 1.2383 -6.7400 -2.4167 26 1 1.7787 -7.2665 -1.6299 27 6 1.5368 -7.3883 -3.7701 28 6 1.6726 -5.2713 -2.4438 29 1 -0.3633 0.0056 1.0276 30 1 -0.3634 0.8872 -0.5187 31 1 -0.3633 -0.8927 -0.5089 32 1 5.0651 1.7498 -1.0385 33 1 5.6049 1.0507 0.5069 34 1 4.5260 2.4664 0.4991 35 1 1.8352 -2.7393 -1.9913 36 1 -0.5831 -4.1400 -0.0943 37 1 -0.7322 -4.1461 -1.8687 38 1 -1.8238 -6.1486 -0.9767 39 1 -0.3572 -6.5817 -0.0634 40 1 -3.9934 -8.7893 -2.9559 41 1 2.6063 -7.3305 -3.9726 42 1 1.2271 -8.4332 -3.7487 43 1 0.9898 -6.8631 -4.5530 44 1 1.2003 -4.7678 -3.2873 45 1 2.7563 -5.2137 -2.5462 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947983514.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:51 Heat of formation + Delta-G solvation = -0.188759 kcal Electronic energy + Delta-G solvation = -28223.912263 eV Core-core repulsion = 24192.623362 eV Total energy + Delta-G solvation = -4031.288900 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.170 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.47885 -42.51849 -40.83356 -39.32463 -36.14315 -35.24636 -34.21541 -33.30734 -32.18593 -31.17167 -30.40453 -28.11890 -27.21300 -26.33643 -24.43144 -23.81362 -22.25264 -21.80266 -21.42897 -20.87780 -19.15029 -18.38612 -18.06743 -17.88716 -17.43281 -17.17037 -16.84379 -16.33604 -15.76756 -15.70956 -15.54754 -15.33779 -14.92892 -14.81151 -14.62699 -14.50503 -14.31402 -14.18601 -13.85998 -13.71038 -13.47916 -13.29721 -13.04604 -12.85927 -12.72829 -12.62753 -12.23584 -12.08963 -11.97483 -11.86414 -11.71332 -11.52771 -11.39286 -11.04936 -10.69108 -10.44374 -10.08774 -9.91070 -8.87254 -8.10691 -5.42820 0.19577 0.85396 1.09455 1.31310 1.39324 1.42481 1.50079 2.17811 2.45198 2.71015 3.09044 3.25318 3.33440 3.71521 3.77250 3.88596 4.00161 4.09872 4.21440 4.22425 4.26895 4.30160 4.48484 4.58328 4.58791 4.64445 4.68819 4.73057 4.74401 4.84079 4.87279 4.96379 5.02501 5.07670 5.09282 5.23566 5.28887 5.46448 5.49234 5.59108 5.59954 5.95530 6.21854 6.23936 6.49975 6.97021 7.15687 7.68780 8.09892 9.08720 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.021493 B = 0.003142 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.427572 B = 8910.071916 C = 9486.522046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.131 3.869 3 N -0.281 5.281 4 N -0.367 5.367 5 C 0.080 3.920 6 C 0.293 3.707 7 F -0.087 7.087 8 C -0.310 4.310 9 C 0.601 3.399 10 O -0.572 6.572 11 N -0.697 5.697 12 C 0.158 3.842 13 H 0.068 0.932 14 C -0.129 4.129 15 C 0.125 3.875 16 N -0.615 5.615 17 C -0.232 4.232 18 H 0.073 0.927 19 C -0.032 4.032 20 N -0.957 5.957 21 Si 0.932 3.068 22 H -0.281 1.281 23 H -0.314 1.314 24 H -0.267 1.267 25 C 0.164 3.836 26 H 0.034 0.966 27 C -0.129 4.129 28 C -0.121 4.121 29 H 0.091 0.909 30 H 0.101 0.899 31 H 0.081 0.919 32 H 0.104 0.896 33 H 0.108 0.892 34 H 0.114 0.886 35 H 0.414 0.586 36 H 0.061 0.939 37 H 0.069 0.931 38 H 0.051 0.949 39 H 0.023 0.977 40 H 0.259 0.741 41 H 0.081 0.919 42 H 0.040 0.960 43 H 0.047 0.953 44 H 0.074 0.926 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.727 22.267 4.213 28.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.035 4.035 3 N -0.104 5.104 4 N -0.151 5.151 5 C -0.058 4.058 6 C 0.144 3.856 7 F -0.066 7.066 8 C -0.326 4.326 9 C 0.386 3.614 10 O -0.451 6.451 11 N -0.347 5.347 12 C 0.054 3.946 13 H 0.087 0.913 14 C -0.169 4.169 15 C -0.001 4.001 16 N -0.340 5.340 17 C -0.362 4.362 18 H 0.090 0.910 19 C -0.227 4.227 20 N -0.604 5.604 21 Si 0.762 3.238 22 H -0.208 1.208 23 H -0.243 1.243 24 H -0.192 1.192 25 C 0.059 3.941 26 H 0.052 0.948 27 C -0.186 4.186 28 C -0.161 4.161 29 H 0.109 0.891 30 H 0.120 0.880 31 H 0.100 0.900 32 H 0.122 0.878 33 H 0.126 0.874 34 H 0.132 0.868 35 H 0.250 0.750 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.070 0.930 39 H 0.041 0.959 40 H 0.068 0.932 41 H 0.100 0.900 42 H 0.059 0.941 43 H 0.066 0.934 44 H 0.093 0.907 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 17.720 23.124 4.924 29.546 hybrid contribution -0.266 -1.503 0.615 1.646 sum 17.454 21.621 5.539 28.333 Atomic orbital electron populations 1.20435 0.83847 1.05008 1.04631 1.22496 0.98123 0.87414 0.95443 1.77299 0.84777 1.21130 1.27209 1.49051 1.07919 1.02422 1.55739 1.22526 0.82490 0.94659 1.06157 1.17747 0.82981 0.82617 1.02223 1.91669 1.49472 1.71677 1.93755 1.19644 0.91359 0.94930 1.26715 1.17266 0.76055 0.84429 0.83639 1.90795 1.52975 1.68784 1.32536 1.46023 1.67116 1.13012 1.08514 1.20774 0.93594 0.80971 0.99269 0.91348 1.22221 0.96150 0.96815 1.01723 1.21275 0.97518 0.92079 0.89213 1.44669 1.03446 1.57961 1.27950 1.18934 1.00689 1.25090 0.91447 0.90957 1.25822 0.97069 0.99696 1.00091 1.69923 1.06234 1.48304 1.35958 0.86138 0.77467 0.76171 0.83978 1.20781 1.24314 1.19205 1.20681 0.82771 0.94005 0.96665 0.94802 1.21729 1.01032 1.00079 0.95785 1.22208 1.01870 0.96086 0.95894 0.89055 0.87994 0.90003 0.87779 0.87378 0.86754 0.74950 0.92080 0.91191 0.93033 0.95947 0.93218 0.90026 0.94106 0.93382 0.90701 0.88838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.36 10.28 71.24 0.73 -0.62 16 2 C 0.13 2.80 7.26 43.55 0.32 3.11 16 3 N -0.28 -5.71 12.49 -46.64 -0.58 -6.29 16 4 N -0.37 -6.26 3.98 -368.85 -1.47 -7.73 16 5 C 0.08 0.54 11.43 127.77 1.46 2.00 16 6 C 0.29 6.13 8.70 84.36 0.73 6.86 16 7 F -0.09 -1.74 17.31 44.97 0.78 -0.96 16 8 C -0.31 -7.46 5.89 -20.09 -0.12 -7.58 16 9 C 0.60 17.25 7.32 86.59 0.63 17.89 16 10 O -0.57 -21.38 16.77 -4.12 -0.07 -21.45 16 11 N -0.70 -17.33 5.07 -445.91 -2.26 -19.60 16 12 C 0.16 4.78 2.42 45.02 0.11 4.89 16 13 H 0.07 2.34 7.58 -2.39 -0.02 2.33 16 14 C -0.13 -4.53 5.65 30.67 0.17 -4.35 16 15 C 0.12 5.43 4.20 86.36 0.36 5.80 16 16 N -0.62 -28.03 2.75 -675.23 -1.86 -29.88 16 17 C -0.23 -12.63 9.05 84.03 0.76 -11.87 16 18 H 0.07 4.17 6.38 -2.91 -0.02 4.15 16 19 C -0.03 -1.88 5.24 84.86 0.44 -1.44 16 20 N -0.96 -59.82 13.97 21.65 0.30 -59.51 16 21 Si 0.93 47.65 24.34 68.60 1.67 49.32 16 22 H -0.28 -13.82 6.62 99.48 0.66 -13.16 16 23 H -0.31 -16.39 7.11 99.48 0.71 -15.68 16 24 H -0.27 -13.33 6.63 99.48 0.66 -12.67 16 25 C 0.16 5.92 3.50 44.97 0.16 6.08 16 26 H 0.03 1.24 8.14 -2.38 -0.02 1.22 16 27 C -0.13 -4.33 7.95 71.98 0.57 -3.76 16 28 C -0.12 -3.38 4.84 30.67 0.15 -3.24 16 29 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.08 1.43 8.01 -2.39 -0.02 1.41 16 32 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 33 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 34 H 0.11 0.49 8.14 -2.39 -0.02 0.48 16 35 H 0.41 7.93 8.59 -92.71 -0.80 7.14 16 36 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 37 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 38 H 0.05 2.48 4.62 -2.39 -0.01 2.47 16 39 H 0.02 1.00 7.02 -2.39 -0.02 0.98 16 40 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 41 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 42 H 0.04 1.56 7.66 -2.39 -0.02 1.54 16 43 H 0.05 1.71 7.40 -2.39 -0.02 1.69 16 44 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 45 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -74.73 365.89 3.12 -71.61 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: 0.13 Total: 10.74 kcal Atomic # 6 Polarization: 7.28 SS G_CDS: 6.49 Total: 13.76 kcal Atomic # 7 Polarization: -117.15 SS G_CDS: -5.87 Total: -123.02 kcal Atomic # 8 Polarization: -21.38 SS G_CDS: -0.07 Total: -21.45 kcal Atomic # 9 Polarization: -1.74 SS G_CDS: 0.78 Total: -0.96 kcal Atomic # 14 Polarization: 47.65 SS G_CDS: 1.67 Total: 49.32 kcal Total: -74.73 3.12 -71.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947983514.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.422 kcal (2) G-P(sol) polarization free energy of solvation -74.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds