Wall clock time and date at job start Tue Mar 31 2020 14:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30373 * 125.96307 * 2 1 4 4 N 1.39919 * 109.01749 * 180.02562 * 3 2 1 5 5 C 1.46498 * 125.73847 * 179.97438 * 4 3 2 6 6 C 1.34408 * 108.51647 * 0.02562 * 4 3 2 7 7 F 1.35099 * 126.34639 * 179.97438 * 6 4 3 8 8 C 1.38504 * 107.31055 * 0.25961 * 6 4 3 9 9 C 1.47169 * 126.45697 * 179.73810 * 8 6 4 10 10 O 1.21640 * 120.00066 * 90.02479 * 9 8 6 11 11 N 1.34773 * 120.00349 * 270.02647 * 9 8 6 12 12 C 1.46496 * 120.00262 * 180.02562 * 11 9 8 13 13 H 1.08992 * 109.49771 * 35.00016 * 12 11 9 14 14 C 1.53196 * 109.49640 * 274.93210 * 12 11 9 15 15 N 1.46935 * 108.77042 * 185.44635 * 14 12 11 16 16 C 1.36939 * 120.60482 * 233.57489 * 15 14 12 17 17 H 1.08004 * 119.99527 * 27.66242 * 16 15 14 18 18 C 1.38803 * 120.00325 * 207.65986 * 16 15 14 19 19 N 1.31623 * 119.99859 * 17.36846 * 18 16 15 20 20 Si 1.86797 * 120.00354 * 197.36215 * 18 16 15 21 21 H 1.48494 * 109.47157 * 90.00085 * 20 18 16 22 22 H 1.48499 * 109.47211 * 210.00339 * 20 18 16 23 23 H 1.48505 * 109.47019 * 330.00309 * 20 18 16 24 24 C 1.46923 * 118.76349 * 53.56107 * 15 14 12 25 25 C 1.53195 * 108.77440 * 306.40736 * 24 15 14 26 26 C 1.53037 * 109.31057 * 54.63793 * 25 24 15 27 27 H 1.08999 * 109.44922 * 58.65160 * 26 25 24 28 28 C 1.53002 * 109.45637 * 178.61177 * 26 25 24 29 29 H 1.09006 * 109.46864 * 89.97563 * 1 2 3 30 30 H 1.09003 * 109.47314 * 209.97501 * 1 2 3 31 31 H 1.09002 * 109.47170 * 329.97490 * 1 2 3 32 32 H 1.09008 * 109.47116 * 270.02176 * 5 4 3 33 33 H 1.08995 * 109.47642 * 30.02657 * 5 4 3 34 34 H 1.08999 * 109.46974 * 150.02913 * 5 4 3 35 35 H 0.97002 * 119.99646 * 359.97438 * 11 9 8 36 36 H 1.09002 * 109.58726 * 305.20054 * 14 12 11 37 37 H 1.09004 * 109.58491 * 65.62604 * 14 12 11 38 38 H 0.96999 * 119.99979 * 180.02562 * 19 18 16 39 39 H 1.09002 * 109.58164 * 186.62495 * 24 15 14 40 40 H 1.08997 * 109.70932 * 66.26876 * 24 15 14 41 41 H 1.08997 * 109.50005 * 294.68659 * 25 24 15 42 42 H 1.09003 * 109.49670 * 174.59160 * 25 24 15 43 43 H 1.09005 * 109.47145 * 180.02562 * 28 26 25 44 44 H 1.08995 * 109.47769 * 300.07021 * 28 26 25 45 45 H 1.09005 * 109.46874 * 60.07401 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2727 1.0552 0.0000 4 7 3.6111 0.6474 -0.0006 5 6 4.7762 1.5355 -0.0013 6 6 3.6480 -0.6961 -0.0015 7 9 4.7577 -1.4667 -0.0028 8 6 2.3375 -1.1444 -0.0075 9 6 1.8931 -2.5473 -0.0160 10 8 1.7060 -3.1324 1.0339 11 7 1.6934 -3.1840 -1.1870 12 6 1.2505 -4.5804 -1.1954 13 1 0.5759 -4.7531 -0.3569 14 6 2.4670 -5.5033 -1.0715 15 7 2.0202 -6.8959 -1.2129 16 6 2.3326 -7.8285 -0.2601 17 1 2.4945 -7.5220 0.7628 18 6 2.4412 -9.1676 -0.6088 19 7 2.5862 -9.5091 -1.8716 20 14 2.3817 -10.4851 0.7141 21 1 0.9750 -10.9109 0.9258 22 1 3.1934 -11.6529 0.2866 23 1 2.9296 -9.9389 1.9817 24 6 1.2319 -7.2689 -2.3953 25 6 0.0292 -6.3262 -2.5035 26 6 0.5209 -4.8770 -2.5076 27 1 1.2032 -4.7276 -3.3443 28 6 -0.6750 -3.9334 -2.6504 29 1 -0.3633 0.0004 -1.0277 30 1 -0.3634 -0.8902 0.5134 31 1 -0.3633 0.8898 0.5142 32 1 5.0645 1.7559 -1.0292 33 1 4.5262 2.4635 0.5129 34 1 5.6051 1.0478 0.5117 35 1 1.8422 -2.7173 -2.0242 36 1 3.1851 -5.2688 -1.8574 37 1 2.9323 -5.3656 -0.0955 38 1 2.6617 -10.4449 -2.1154 39 1 0.8826 -8.2963 -2.2923 40 1 1.8474 -7.1802 -3.2905 41 1 -0.6338 -6.4830 -1.6527 42 1 -0.5106 -6.5298 -3.4284 43 1 -0.3250 -2.9011 -2.6537 44 1 -1.1949 -4.1444 -3.5848 45 1 -1.3573 -4.0823 -1.8134 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968599459.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:03 Heat of formation + Delta-G solvation = -5.702466 kcal Electronic energy + Delta-G solvation = -28419.366873 eV Core-core repulsion = 24387.838880 eV Total energy + Delta-G solvation = -4031.527993 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.170 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.47813 -42.50572 -40.84255 -39.07206 -36.16859 -35.22870 -34.43242 -33.02392 -31.76309 -30.69100 -30.12134 -28.90343 -27.09764 -25.87347 -24.42734 -23.10638 -22.65219 -21.84144 -21.37774 -20.83968 -19.04930 -18.72659 -18.06570 -17.83390 -17.23125 -17.12386 -16.71273 -15.86215 -15.76017 -15.75122 -15.41552 -15.14126 -14.93752 -14.72354 -14.52570 -14.40892 -14.17162 -14.12416 -13.70611 -13.54853 -13.27605 -13.17906 -13.12560 -13.00956 -12.75289 -12.62541 -12.27967 -12.07373 -12.01408 -11.95046 -11.64164 -11.46210 -11.24565 -11.01333 -10.59436 -10.42198 -10.13048 -9.89520 -8.70006 -7.90519 -5.35999 0.19559 0.85659 1.12437 1.42547 1.44962 1.45762 1.55356 2.19500 2.51080 2.74359 3.23130 3.27165 3.69129 3.74383 3.76478 3.95290 4.03558 4.13586 4.16083 4.23265 4.30177 4.46491 4.54340 4.58059 4.68799 4.76136 4.77235 4.80012 4.88563 4.94509 4.99307 5.07104 5.11480 5.22020 5.25732 5.32582 5.46228 5.50127 5.56695 5.60051 5.63740 5.78741 6.23289 6.36529 6.53486 7.12632 7.20984 7.82172 8.32153 9.15075 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.016834 B = 0.003409 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.949058 B = 8211.103786 C = 9067.403045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.134 3.866 3 N -0.278 5.278 4 N -0.367 5.367 5 C 0.081 3.919 6 C 0.287 3.713 7 F -0.092 7.092 8 C -0.308 4.308 9 C 0.599 3.401 10 O -0.575 6.575 11 N -0.691 5.691 12 C 0.150 3.850 13 H 0.062 0.938 14 C 0.143 3.857 15 N -0.606 5.606 16 C -0.268 4.268 17 H 0.052 0.948 18 C -0.043 4.043 19 N -0.929 5.929 20 Si 0.965 3.035 21 H -0.281 1.281 22 H -0.289 1.289 23 H -0.276 1.276 24 C 0.172 3.828 25 C -0.122 4.122 26 C -0.083 4.083 27 H 0.078 0.922 28 C -0.135 4.135 29 H 0.109 0.891 30 H 0.074 0.926 31 H 0.098 0.902 32 H 0.104 0.896 33 H 0.117 0.883 34 H 0.104 0.896 35 H 0.413 0.587 36 H 0.018 0.982 37 H 0.028 0.972 38 H 0.252 0.748 39 H 0.055 0.945 40 H 0.003 0.997 41 H 0.048 0.952 42 H 0.084 0.916 43 H 0.070 0.930 44 H 0.072 0.928 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.419 24.971 -3.009 25.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.032 4.032 3 N -0.101 5.101 4 N -0.151 5.151 5 C -0.058 4.058 6 C 0.138 3.862 7 F -0.071 7.071 8 C -0.324 4.324 9 C 0.384 3.616 10 O -0.454 6.454 11 N -0.342 5.342 12 C 0.044 3.956 13 H 0.081 0.919 14 C 0.016 3.984 15 N -0.330 5.330 16 C -0.398 4.398 17 H 0.070 0.930 18 C -0.239 4.239 19 N -0.574 5.574 20 Si 0.793 3.207 21 H -0.207 1.207 22 H -0.215 1.215 23 H -0.201 1.201 24 C 0.047 3.953 25 C -0.161 4.161 26 C -0.102 4.102 27 H 0.096 0.904 28 C -0.192 4.192 29 H 0.128 0.872 30 H 0.093 0.907 31 H 0.117 0.883 32 H 0.122 0.878 33 H 0.135 0.865 34 H 0.122 0.878 35 H 0.250 0.750 36 H 0.036 0.964 37 H 0.046 0.954 38 H 0.062 0.938 39 H 0.074 0.926 40 H 0.021 0.979 41 H 0.067 0.933 42 H 0.102 0.898 43 H 0.089 0.911 44 H 0.091 0.909 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.288 25.735 -2.333 25.941 hybrid contribution 1.081 -2.090 0.485 2.402 sum -1.208 23.645 -1.848 23.747 Atomic orbital electron populations 1.20464 0.83257 1.04602 1.05384 1.22568 0.98371 0.86995 0.95278 1.77274 0.84552 1.21092 1.27205 1.49021 1.08053 1.02160 1.55884 1.22512 0.82519 0.94627 1.06136 1.17860 0.83075 0.82785 1.02470 1.91673 1.49780 1.71864 1.93777 1.19642 0.91363 0.94887 1.26537 1.17321 0.76167 0.84538 0.83562 1.90821 1.52672 1.68477 1.33441 1.45862 1.67391 1.12584 1.08332 1.21321 0.95802 0.79309 0.99174 0.91948 1.21227 0.94454 0.85120 0.97606 1.44217 1.60467 1.04343 1.23929 1.19406 1.42747 0.88507 0.89187 0.92984 1.25703 1.00358 0.99682 0.98122 1.70171 1.53723 1.16471 1.17056 0.85305 0.77710 0.78719 0.78954 1.20720 1.21476 1.20122 1.20722 0.90105 0.97598 0.86902 1.22077 0.98064 0.94429 1.01579 1.21238 0.97957 0.95769 0.95221 0.90379 1.21775 0.96409 0.98784 1.02227 0.87239 0.90710 0.88347 0.87777 0.86490 0.87773 0.74993 0.96396 0.95364 0.93846 0.92636 0.97867 0.93315 0.89778 0.91115 0.90891 0.93351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.22 10.28 71.24 0.73 -0.48 16 2 C 0.13 2.95 7.26 43.55 0.32 3.27 16 3 N -0.28 -5.92 12.49 -46.64 -0.58 -6.50 16 4 N -0.37 -7.15 3.98 -368.86 -1.47 -8.62 16 5 C 0.08 0.74 11.43 127.77 1.46 2.20 16 6 C 0.29 7.13 8.70 84.36 0.73 7.87 16 7 F -0.09 -2.40 17.31 44.97 0.78 -1.63 16 8 C -0.31 -8.31 5.89 -20.09 -0.12 -8.43 16 9 C 0.60 19.79 7.33 86.59 0.63 20.42 16 10 O -0.58 -24.85 16.77 -4.16 -0.07 -24.92 16 11 N -0.69 -20.08 4.37 -445.68 -1.95 -22.02 16 12 C 0.15 5.40 2.06 45.07 0.09 5.49 16 13 H 0.06 2.62 7.58 -2.39 -0.02 2.60 16 14 C 0.14 6.57 6.09 86.36 0.53 7.10 16 15 N -0.61 -32.21 3.00 -699.06 -2.09 -34.31 16 16 C -0.27 -15.87 9.58 84.03 0.81 -15.07 16 17 H 0.05 3.16 7.89 -2.91 -0.02 3.13 16 18 C -0.04 -2.48 4.91 84.86 0.42 -2.07 16 19 N -0.93 -55.75 11.19 21.65 0.24 -55.51 16 20 Si 0.97 46.87 29.59 68.60 2.03 48.89 16 21 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 22 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 23 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 24 C 0.17 8.30 5.31 86.36 0.46 8.76 16 25 C -0.12 -4.39 5.36 30.67 0.16 -4.22 16 26 C -0.08 -2.47 2.27 -10.77 -0.02 -2.49 16 27 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 28 C -0.13 -2.90 9.02 71.98 0.65 -2.25 16 29 H 0.11 1.18 8.14 -2.38 -0.02 1.16 16 30 H 0.07 1.35 8.02 -2.39 -0.02 1.34 16 31 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.10 0.59 8.14 -2.38 -0.02 0.57 16 33 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.41 9.18 8.29 -92.71 -0.77 8.41 16 36 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.03 1.43 7.93 -2.38 -0.02 1.41 16 38 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 39 H 0.06 3.04 6.04 -2.39 -0.01 3.03 16 40 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 41 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.08 2.54 8.14 -2.39 -0.02 2.53 16 43 H 0.07 1.24 7.36 -2.38 -0.02 1.22 16 44 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 Total: -1.00 -77.48 374.60 3.98 -73.51 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: 0.24 Total: 11.01 kcal Atomic # 6 Polarization: 13.25 SS G_CDS: 6.85 Total: 20.10 kcal Atomic # 7 Polarization: -121.11 SS G_CDS: -5.85 Total: -126.96 kcal Atomic # 8 Polarization: -24.85 SS G_CDS: -0.07 Total: -24.92 kcal Atomic # 9 Polarization: -2.40 SS G_CDS: 0.78 Total: -1.63 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 2.03 Total: 48.89 kcal Total: -77.48 3.98 -73.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968599459.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.805 kcal (2) G-P(sol) polarization free energy of solvation -77.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds