Wall clock time and date at job start Tue Mar 31 2020 13:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86795 * 120.00231 * 2 1 4 4 H 1.48499 * 109.47430 * 240.00423 * 3 2 1 5 5 H 1.48504 * 109.46871 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.47159 * 119.99979 * 3 2 1 7 7 C 1.38812 * 119.99984 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00065 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00045 * 359.97438 * 7 2 1 10 10 C 1.46497 * 120.00043 * 180.02562 * 9 7 2 11 11 H 1.08997 * 109.47220 * 35.00293 * 10 9 7 12 12 C 1.52999 * 109.47160 * 275.00561 * 10 9 7 13 13 C 1.53000 * 109.47153 * 180.02562 * 12 10 9 14 14 C 1.52995 * 109.47435 * 59.99570 * 13 12 10 15 15 C 1.52999 * 109.47301 * 300.00339 * 14 13 12 16 16 H 1.08999 * 109.47640 * 180.02562 * 15 14 13 17 17 N 1.46508 * 109.47071 * 299.99944 * 15 14 13 18 18 C 1.34780 * 119.99808 * 274.99924 * 17 15 14 19 19 O 1.21599 * 119.99853 * 359.97438 * 18 17 15 20 20 C 1.47425 * 119.99582 * 180.02562 * 18 17 15 21 21 C 1.41294 * 126.41820 * 0.15507 * 20 18 17 22 22 N 1.30448 * 108.01962 * 180.28678 * 21 20 18 23 23 N 1.39936 * 108.90120 * 359.74298 * 22 21 20 24 24 C 1.46489 * 125.75299 * 179.97438 * 23 22 21 25 25 C 1.52999 * 109.47381 * 304.99811 * 24 23 22 26 26 F 1.39906 * 109.47313 * 180.02562 * 25 24 23 27 27 C 1.34264 * 108.48840 * 359.97438 * 23 22 21 28 28 C 1.52995 * 109.47216 * 155.00261 * 10 9 7 29 29 H 0.96999 * 120.00233 * 0.02562 * 1 2 3 30 30 H 0.97001 * 119.99477 * 0.02562 * 9 7 2 31 31 H 1.09000 * 109.46875 * 299.99439 * 12 10 9 32 32 H 1.08999 * 109.47640 * 59.99706 * 12 10 9 33 33 H 1.08998 * 109.47379 * 180.02562 * 13 12 10 34 34 H 1.09006 * 109.47155 * 299.99672 * 13 12 10 35 35 H 1.09005 * 109.47484 * 180.02562 * 14 13 12 36 36 H 1.08997 * 109.47000 * 60.00022 * 14 13 12 37 37 H 0.96996 * 120.00127 * 94.99727 * 17 15 14 38 38 H 1.07995 * 125.98673 * 0.02724 * 21 20 18 39 39 H 1.08997 * 109.47493 * 65.00122 * 24 23 22 40 40 H 1.09001 * 109.47324 * 184.99818 * 24 23 22 41 41 H 1.09004 * 109.47392 * 299.99762 * 25 24 23 42 42 H 1.09001 * 109.47156 * 60.00216 * 25 24 23 43 43 H 1.08002 * 126.28609 * 179.97438 * 27 23 22 44 44 H 1.08997 * 109.47000 * 59.99897 * 28 10 9 45 45 H 1.08998 * 109.47336 * 300.00512 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6963 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 2.9687 -3.5506 0.5889 12 6 2.4220 -4.0356 -1.4375 13 6 3.1865 -5.3609 -1.4376 14 6 2.3088 -6.4560 -0.8282 15 6 1.9448 -6.0772 0.6088 16 1 1.3199 -6.8576 1.0431 17 7 3.1688 -5.9349 1.4013 18 6 3.7348 -7.0192 1.9675 19 8 3.2293 -8.1154 1.8209 20 6 4.9662 -6.8759 2.7654 21 6 5.6619 -5.6740 3.0257 22 7 6.7009 -5.9602 3.7606 23 7 6.7162 -7.3376 4.0072 24 6 7.7223 -8.0552 4.7938 25 6 9.1144 -7.7611 4.2315 26 9 10.0752 -8.4470 4.9824 27 6 5.6533 -7.8904 3.4011 28 6 1.1808 -4.7522 0.6090 29 1 -0.4850 0.8400 -0.0004 30 1 0.3555 -2.3880 -0.0005 31 1 1.5113 -4.1419 -2.0270 32 1 3.0469 -3.2552 -1.8718 33 1 3.4462 -5.6305 -2.4612 34 1 4.0972 -5.2551 -0.8480 35 1 2.8536 -7.4001 -0.8278 36 1 1.3982 -6.5618 -1.4178 37 1 3.5718 -5.0605 1.5184 38 1 5.3847 -4.6913 2.6739 39 1 7.6732 -7.7276 5.8322 40 1 7.5282 -9.1266 4.7414 41 1 9.1636 -8.0889 3.1931 42 1 9.3086 -6.6898 4.2840 43 1 5.3880 -8.9373 3.4054 44 1 0.2702 -4.8584 0.0195 45 1 0.9215 -4.4823 1.6327 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981183881.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:01 Heat of formation + Delta-G solvation = -33.085693 kcal Electronic energy + Delta-G solvation = -27252.090211 eV Core-core repulsion = 23219.374792 eV Total energy + Delta-G solvation = -4032.715418 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.170 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -48.78280 -42.43052 -40.87555 -38.97193 -36.07707 -35.29135 -34.28977 -32.87973 -31.61521 -31.06272 -29.86791 -29.28854 -25.66772 -25.00069 -24.18372 -23.19904 -22.45411 -21.76793 -21.32983 -19.98826 -19.27816 -18.92552 -17.53210 -17.41440 -16.95519 -16.60833 -16.58126 -16.23365 -16.13468 -15.89506 -15.48060 -15.29338 -15.04314 -14.89719 -14.74456 -14.62208 -13.97956 -13.78906 -13.73321 -13.44783 -13.03188 -12.96796 -12.84784 -12.73504 -12.63690 -12.23092 -12.20847 -12.03482 -11.90246 -11.80121 -11.54017 -11.40379 -10.94721 -10.86027 -10.78556 -10.64814 -10.04424 -9.65280 -8.94372 -7.89134 -5.16551 0.50545 1.13025 1.23240 1.50422 1.52315 1.58046 2.38013 2.51042 2.60041 3.15294 3.44389 3.57494 3.69892 3.75244 3.80022 3.94499 3.97792 3.99396 4.11879 4.17440 4.25300 4.36297 4.36877 4.42309 4.52475 4.61277 4.69674 4.74546 4.77030 4.78697 4.88243 5.03977 5.16599 5.24205 5.29122 5.35670 5.43145 5.55591 5.57586 5.62024 5.73522 5.78111 6.33208 6.44297 6.69262 7.35647 7.39466 8.17072 8.38765 9.34286 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.012917 B = 0.002787 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.171881 B =10044.603594 C =11552.753279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.078 4.078 3 Si 0.967 3.033 4 H -0.280 1.280 5 H -0.301 1.301 6 H -0.277 1.277 7 C -0.232 4.232 8 H 0.078 0.922 9 N -0.737 5.737 10 C 0.177 3.823 11 H 0.048 0.952 12 C -0.128 4.128 13 C -0.104 4.104 14 C -0.121 4.121 15 C 0.162 3.838 16 H 0.083 0.917 17 N -0.710 5.710 18 C 0.597 3.403 19 O -0.588 6.588 20 C -0.311 4.311 21 C 0.087 3.913 22 N -0.319 5.319 23 N -0.360 5.360 24 C 0.099 3.901 25 C 0.056 3.944 26 F -0.216 7.216 27 C 0.142 3.858 28 C -0.122 4.122 29 H 0.248 0.752 30 H 0.371 0.629 31 H 0.046 0.954 32 H 0.040 0.960 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.077 0.923 37 H 0.406 0.594 38 H 0.203 0.797 39 H 0.108 0.892 40 H 0.142 0.858 41 H 0.089 0.911 42 H 0.084 0.916 43 H 0.214 0.786 44 H 0.076 0.924 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.274 -19.977 6.970 26.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.270 4.270 3 Si 0.796 3.204 4 H -0.206 1.206 5 H -0.227 1.227 6 H -0.203 1.203 7 C -0.364 4.364 8 H 0.096 0.904 9 N -0.377 5.377 10 C 0.069 3.931 11 H 0.066 0.934 12 C -0.168 4.168 13 C -0.142 4.142 14 C -0.159 4.159 15 C 0.057 3.943 16 H 0.101 0.899 17 N -0.361 5.361 18 C 0.386 3.614 19 O -0.470 6.470 20 C -0.326 4.326 21 C -0.101 4.101 22 N -0.138 5.138 23 N -0.139 5.139 24 C -0.022 4.022 25 C 0.000 4.000 26 F -0.197 7.197 27 C -0.010 4.010 28 C -0.160 4.160 29 H 0.057 0.943 30 H 0.203 0.797 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.095 0.905 37 H 0.242 0.758 38 H 0.220 0.780 39 H 0.127 0.873 40 H 0.160 0.840 41 H 0.107 0.893 42 H 0.103 0.897 43 H 0.230 0.770 44 H 0.095 0.905 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 16.238 -20.216 7.593 27.019 hybrid contribution -0.794 1.454 -0.474 1.723 sum 15.443 -18.762 7.120 25.322 Atomic orbital electron populations 1.69803 1.06554 1.25843 1.59996 1.25491 0.96265 1.00889 1.04338 0.85306 0.77203 0.79700 0.78148 1.20629 1.22713 1.20329 1.19572 0.91429 0.85143 1.40209 0.90439 1.42647 1.05445 1.00984 1.88584 1.20371 0.94084 0.84575 0.94051 0.93415 1.22113 0.99424 0.96432 0.98843 1.21399 0.98248 0.93749 1.00824 1.21846 1.00767 0.98269 0.95047 1.20786 0.85304 0.96826 0.91404 0.89910 1.45917 1.27629 1.10392 1.52120 1.17413 0.82649 0.83673 0.77677 1.90725 1.65345 1.26975 1.63935 1.20273 1.03083 0.94507 1.14742 1.24404 0.91329 0.99703 0.94626 1.77162 1.22821 0.92051 1.21796 1.48479 1.20342 1.05431 1.39651 1.22581 0.85207 0.98675 0.95753 1.22132 0.84527 0.97989 0.95308 1.92790 1.65454 1.82273 1.79228 1.23365 0.86438 1.00588 0.90563 1.21963 0.99050 0.93600 1.01437 0.94276 0.79694 0.93467 0.94084 0.91558 0.91969 0.91809 0.90451 0.75765 0.78008 0.87349 0.84014 0.89254 0.89735 0.76955 0.90521 0.91975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.55 13.06 21.65 0.28 -58.27 16 2 C -0.08 -4.36 5.50 84.86 0.47 -3.90 16 3 Si 0.97 45.27 29.55 68.60 2.03 47.30 16 4 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 5 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 6 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 7 C -0.23 -12.27 9.93 84.03 0.83 -11.44 16 8 H 0.08 3.90 7.83 -2.91 -0.02 3.88 16 9 N -0.74 -35.11 5.12 -322.96 -1.65 -36.76 16 10 C 0.18 6.28 2.60 44.99 0.12 6.40 16 11 H 0.05 1.64 6.44 -2.39 -0.02 1.62 16 12 C -0.13 -4.18 5.50 30.59 0.17 -4.01 16 13 C -0.10 -2.63 5.77 30.59 0.18 -2.45 16 14 C -0.12 -2.93 5.60 30.59 0.17 -2.75 16 15 C 0.16 4.16 2.78 44.97 0.13 4.29 16 16 H 0.08 2.23 7.57 -2.39 -0.02 2.21 16 17 N -0.71 -17.11 4.22 -445.86 -1.88 -18.99 16 18 C 0.60 15.12 7.78 86.66 0.67 15.79 16 19 O -0.59 -18.15 16.56 -4.03 -0.07 -18.21 16 20 C -0.31 -6.45 6.13 -20.15 -0.12 -6.58 16 21 C 0.09 1.71 11.50 85.65 0.99 2.70 16 22 N -0.32 -6.32 12.33 -56.28 -0.69 -7.01 16 23 N -0.36 -5.24 3.65 -346.32 -1.26 -6.51 16 24 C 0.10 0.75 6.94 86.38 0.60 1.35 16 25 C 0.06 0.53 7.73 71.98 0.56 1.08 16 26 F -0.22 -2.81 17.36 44.97 0.78 -2.03 16 27 C 0.14 2.23 11.25 84.27 0.95 3.18 16 28 C -0.12 -3.65 5.07 30.58 0.16 -3.49 16 29 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 30 H 0.37 19.32 7.80 -92.71 -0.72 18.60 16 31 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.06 1.52 7.60 -2.38 -0.02 1.50 16 35 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 36 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.41 9.14 5.82 -92.71 -0.54 8.60 16 38 H 0.20 3.29 7.50 -2.91 -0.02 3.27 16 39 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.14 0.24 8.06 -2.39 -0.02 0.22 16 41 H 0.09 0.73 8.14 -2.38 -0.02 0.71 16 42 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.21 2.16 8.06 -2.91 -0.02 2.13 16 44 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 45 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -70.40 373.68 3.14 -67.26 By element: Atomic # 1 Polarization: 33.30 SS G_CDS: -0.25 Total: 33.05 kcal Atomic # 6 Polarization: -5.68 SS G_CDS: 5.85 Total: 0.17 kcal Atomic # 7 Polarization: -122.33 SS G_CDS: -5.21 Total: -127.54 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: -0.07 Total: -18.21 kcal Atomic # 9 Polarization: -2.81 SS G_CDS: 0.78 Total: -2.03 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -70.40 3.14 -67.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981183881.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.179 kcal (2) G-P(sol) polarization free energy of solvation -70.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds