Wall clock time and date at job start Tue Mar 31 2020 13:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99637 * 2 1 4 4 H 1.48494 * 109.47228 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47000 * 119.99552 * 3 2 1 6 6 H 1.48493 * 109.46907 * 239.99443 * 3 2 1 7 7 C 1.38806 * 120.00103 * 179.71988 * 2 1 3 8 8 H 1.08002 * 120.00167 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00202 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99972 * 180.02562 * 9 7 2 11 11 H 1.08995 * 109.47256 * 34.99759 * 10 9 7 12 12 C 1.52997 * 109.47036 * 274.99761 * 10 9 7 13 13 C 1.53003 * 109.47241 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.47087 * 59.99958 * 13 12 10 15 15 C 1.52997 * 109.47114 * 300.00120 * 14 13 12 16 16 H 1.09004 * 109.46812 * 300.00187 * 15 14 13 17 17 N 1.46503 * 109.47302 * 180.02562 * 15 14 13 18 18 C 1.34770 * 120.00160 * 84.99574 * 17 15 14 19 19 O 1.21603 * 120.00266 * 0.02562 * 18 17 15 20 20 C 1.47429 * 120.00059 * 180.02562 * 18 17 15 21 21 C 1.41287 * 126.41466 * 359.68266 * 20 18 17 22 22 N 1.30453 * 108.02633 * 179.85422 * 21 20 18 23 23 N 1.39939 * 108.89126 * 0.41617 * 22 21 20 24 24 C 1.46503 * 125.74909 * 179.73248 * 23 22 21 25 25 C 1.52998 * 109.47238 * 304.99571 * 24 23 22 26 26 F 1.39900 * 109.46887 * 180.02562 * 25 24 23 27 27 C 1.34258 * 108.49464 * 359.73198 * 23 22 21 28 28 C 1.52994 * 109.47259 * 60.00168 * 15 14 13 29 29 H 0.97005 * 119.99717 * 179.97438 * 1 2 3 30 30 H 0.97001 * 119.99643 * 359.97438 * 9 7 2 31 31 H 1.09009 * 109.47238 * 300.00198 * 12 10 9 32 32 H 1.08997 * 109.47293 * 60.00168 * 12 10 9 33 33 H 1.08997 * 109.46962 * 179.97438 * 13 12 10 34 34 H 1.08995 * 109.46928 * 299.99922 * 13 12 10 35 35 H 1.09004 * 109.47434 * 59.99926 * 14 13 12 36 36 H 1.09003 * 109.47147 * 180.02562 * 14 13 12 37 37 H 0.97005 * 119.99662 * 265.00201 * 17 15 14 38 38 H 1.08005 * 125.98740 * 0.02562 * 21 20 18 39 39 H 1.08998 * 109.47147 * 65.00171 * 24 23 22 40 40 H 1.09001 * 109.46528 * 184.99587 * 24 23 22 41 41 H 1.08998 * 109.47541 * 300.00359 * 25 24 23 42 42 H 1.09003 * 109.46834 * 60.00559 * 25 24 23 43 43 H 1.08000 * 126.29410 * 179.97438 * 27 23 22 44 44 H 1.09002 * 109.47650 * 180.02562 * 28 15 14 45 45 H 1.08994 * 109.47579 * 59.99817 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2851 2.7465 -0.0006 5 1 3.1038 1.6966 1.2126 6 1 3.1039 1.6964 -1.2124 7 6 2.0103 -1.2021 0.0059 8 1 3.0903 -1.2021 0.0063 9 7 1.3257 -2.3880 0.0111 10 6 2.0582 -3.6566 0.0179 11 1 2.9685 -3.5475 0.6075 12 6 2.4232 -4.0425 -1.4169 13 6 3.1877 -5.3678 -1.4100 14 6 2.3096 -6.4599 -0.7958 15 6 1.9447 -6.0740 0.6390 16 1 2.8550 -5.9653 1.2287 17 7 1.1044 -7.1200 1.2273 18 6 1.6736 -8.1993 1.7995 19 8 2.8847 -8.3048 1.8279 20 6 0.8279 -9.2522 2.3910 21 6 -0.5840 -9.2656 2.4390 22 7 -0.9573 -10.3631 3.0373 23 7 0.1815 -11.0890 3.4039 24 6 0.1875 -12.3766 4.1027 25 6 -0.6123 -12.2558 5.4014 26 9 -0.6061 -13.4852 6.0690 27 6 1.2676 -10.4067 3.0071 28 6 1.1802 -4.7488 0.6320 29 1 -0.4850 -0.8401 -0.0004 30 1 0.3557 -2.3880 0.0111 31 1 1.5129 -4.1516 -2.0066 32 1 3.0484 -3.2643 -1.8546 33 1 3.4473 -5.6428 -2.4322 34 1 4.0979 -5.2590 -0.8203 35 1 1.3993 -6.5686 -1.3855 36 1 2.8545 -7.4039 -0.7905 37 1 0.1383 -7.0358 1.2049 38 1 -1.2397 -8.5023 2.0464 39 1 -0.2649 -13.1374 3.4667 40 1 1.2145 -12.6599 4.3335 41 1 -0.1598 -11.4950 6.0374 42 1 -1.6393 -11.9725 5.1705 43 1 2.2961 -10.7057 3.1450 44 1 0.9205 -4.4737 1.6543 45 1 0.2699 -4.8575 0.0424 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981183882.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:07 Heat of formation + Delta-G solvation = -14.561295 kcal Electronic energy + Delta-G solvation = -26630.835433 eV Core-core repulsion = 22598.923293 eV Total energy + Delta-G solvation = -4031.912140 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.170 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -48.34327 -41.80954 -39.67817 -37.86421 -34.86852 -34.73001 -33.46183 -31.12596 -30.92119 -30.13900 -28.77922 -27.51682 -24.52703 -23.71068 -23.27353 -22.00143 -21.34932 -21.02935 -20.21205 -19.48799 -18.36032 -17.30997 -17.07790 -16.73119 -16.19907 -16.09399 -15.65559 -15.28718 -14.86687 -14.75147 -14.37011 -14.22714 -13.94016 -13.84275 -13.61684 -13.46527 -13.45342 -13.17337 -12.65840 -12.24747 -12.19087 -12.02107 -11.71834 -11.34345 -11.02894 -10.88715 -10.81175 -10.66472 -10.28177 -10.27854 -10.13556 -10.08797 -9.93431 -9.77501 -9.22385 -9.13125 -8.90910 -8.84042 -7.02564 -6.08847 -3.08553 1.12346 1.70607 1.81211 3.18877 3.33273 3.52955 3.55484 3.56419 3.73636 3.89228 4.21577 4.28170 4.34346 4.49821 4.66237 4.66862 4.79081 4.95851 4.97404 5.05901 5.13336 5.27086 5.35391 5.51057 5.57538 5.68128 5.70653 5.83665 5.88167 5.95473 5.99121 6.10038 6.25857 6.27553 6.30196 6.45335 6.48646 6.60458 6.67982 6.91743 7.04558 7.06609 7.54452 7.83228 8.24859 8.76975 9.24054 10.10402 10.25263 11.39593 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.022990 B = 0.002044 C = 0.001945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.628752 B =13697.701782 C =14391.002749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.047 4.047 3 Si 1.079 2.921 4 H -0.285 1.285 5 H -0.295 1.295 6 H -0.296 1.296 7 C -0.328 4.328 8 H 0.065 0.935 9 N -0.736 5.736 10 C 0.188 3.812 11 H 0.050 0.950 12 C -0.136 4.136 13 C -0.114 4.114 14 C -0.124 4.124 15 C 0.152 3.848 16 H 0.088 0.912 17 N -0.719 5.719 18 C 0.594 3.406 19 O -0.550 6.550 20 C -0.287 4.287 21 C 0.088 3.912 22 N -0.297 5.297 23 N -0.367 5.367 24 C 0.102 3.898 25 C 0.053 3.947 26 F -0.207 7.207 27 C 0.131 3.869 28 C -0.130 4.130 29 H 0.254 0.746 30 H 0.366 0.634 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.397 0.603 38 H 0.193 0.807 39 H 0.102 0.898 40 H 0.112 0.888 41 H 0.083 0.917 42 H 0.093 0.907 43 H 0.190 0.810 44 H 0.068 0.932 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.288 -26.455 6.389 27.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.244 4.244 3 Si 0.910 3.090 4 H -0.211 1.211 5 H -0.223 1.223 6 H -0.223 1.223 7 C -0.459 4.459 8 H 0.083 0.917 9 N -0.378 5.378 10 C 0.078 3.922 11 H 0.068 0.932 12 C -0.176 4.176 13 C -0.153 4.153 14 C -0.162 4.162 15 C 0.047 3.953 16 H 0.106 0.894 17 N -0.368 5.368 18 C 0.381 3.619 19 O -0.429 6.429 20 C -0.302 4.302 21 C -0.100 4.100 22 N -0.116 5.116 23 N -0.146 5.146 24 C -0.020 4.020 25 C -0.003 4.003 26 F -0.188 7.188 27 C -0.019 4.019 28 C -0.169 4.169 29 H 0.065 0.935 30 H 0.199 0.801 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.231 0.769 38 H 0.210 0.790 39 H 0.120 0.880 40 H 0.130 0.870 41 H 0.101 0.899 42 H 0.111 0.889 43 H 0.207 0.793 44 H 0.086 0.914 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.353 -25.682 6.921 26.601 hybrid contribution 0.086 -1.274 -0.365 1.328 sum -0.267 -26.956 6.556 27.744 Atomic orbital electron populations 1.70890 1.06024 1.28347 1.53807 1.25753 0.97073 1.00970 1.00599 0.83252 0.74219 0.75677 0.75863 1.21092 1.22283 1.22300 1.20040 0.92014 0.85741 1.48093 0.91741 1.42412 1.04737 1.00719 1.89885 1.20038 0.94054 0.85026 0.93076 0.93238 1.22266 0.99681 0.95355 1.00322 1.21483 0.98551 0.95293 0.99995 1.21885 1.00080 0.98856 0.95408 1.20994 0.94426 0.85885 0.93946 0.89357 1.45914 1.10327 1.21359 1.59234 1.17187 0.86872 0.80800 0.77065 1.90776 1.14062 1.78454 1.59622 1.20359 0.93613 1.00112 1.16084 1.24157 0.94056 0.95609 0.96227 1.77178 1.07325 1.06857 1.20289 1.48265 1.04275 1.17705 1.44363 1.22323 1.04043 0.81938 0.93661 1.22158 1.03368 0.82826 0.91958 1.92810 1.98060 1.46136 1.81760 1.23020 0.93672 0.91224 0.94022 1.22104 0.99329 0.93597 1.01895 0.93452 0.80103 0.92838 0.91883 0.92469 0.92121 0.92100 0.92054 0.76884 0.79038 0.88024 0.86974 0.89874 0.88905 0.79288 0.91367 0.91832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -29.03 13.70 55.49 0.76 -28.27 16 2 C -0.05 -1.35 5.50 -17.43 -0.10 -1.44 16 3 Si 1.08 25.92 29.92 -169.99 -5.09 20.84 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.30 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.30 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.33 -9.13 9.93 -15.06 -0.15 -9.28 16 8 H 0.06 1.78 7.83 -52.49 -0.41 1.37 16 9 N -0.74 -18.01 5.12 -53.43 -0.27 -18.28 16 10 C 0.19 3.66 2.77 -67.93 -0.19 3.47 16 11 H 0.05 1.02 8.08 -51.93 -0.42 0.60 16 12 C -0.14 -2.39 5.50 -26.73 -0.15 -2.54 16 13 C -0.11 -1.64 5.92 -26.73 -0.16 -1.80 16 14 C -0.12 -1.65 5.49 -26.73 -0.15 -1.80 16 15 C 0.15 2.09 2.45 -67.93 -0.17 1.92 16 16 H 0.09 1.39 7.57 -51.93 -0.39 0.99 16 17 N -0.72 -8.27 5.07 -54.88 -0.28 -8.55 16 18 C 0.59 7.50 7.78 -12.52 -0.10 7.40 16 19 O -0.55 -8.84 16.56 5.27 0.09 -8.75 16 20 C -0.29 -2.87 6.13 -105.07 -0.64 -3.51 16 21 C 0.09 0.75 11.50 -16.98 -0.20 0.56 16 22 N -0.30 -2.71 12.33 30.86 0.38 -2.33 16 23 N -0.37 -2.69 3.65 -60.81 -0.22 -2.91 16 24 C 0.10 0.43 6.94 -4.04 -0.03 0.40 16 25 C 0.05 0.25 7.73 37.16 0.29 0.54 16 26 F -0.21 -1.37 17.36 2.25 0.04 -1.33 16 27 C 0.13 1.07 11.25 -16.56 -0.19 0.88 16 28 C -0.13 -2.02 4.86 -26.73 -0.13 -2.15 16 29 H 0.25 7.65 6.77 -40.82 -0.28 7.38 16 30 H 0.37 9.19 6.63 -40.82 -0.27 8.92 16 31 H 0.05 0.95 8.14 -51.92 -0.42 0.53 16 32 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.40 3.54 7.56 -40.82 -0.31 3.23 16 38 H 0.19 1.10 7.50 -52.48 -0.39 0.71 16 39 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.11 0.22 8.06 -51.93 -0.42 -0.20 16 41 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 42 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.19 1.14 8.06 -52.49 -0.42 0.72 16 44 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 376.41 15.07 5.67 5.67 Total: -1.00 -35.15 376.41 -7.73 -42.88 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -6.76 Total: 8.39 kcal Atomic # 6 Polarization: -5.30 SS G_CDS: -2.05 Total: -7.35 kcal Atomic # 7 Polarization: -60.71 SS G_CDS: 0.37 Total: -60.35 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: 0.09 Total: -8.75 kcal Atomic # 9 Polarization: -1.37 SS G_CDS: 0.04 Total: -1.33 kcal Atomic # 14 Polarization: 25.92 SS G_CDS: -5.09 Total: 20.84 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.15 -7.73 -42.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981183882.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.318 kcal (2) G-P(sol) polarization free energy of solvation -35.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds