Wall clock time and date at job start Tue Mar 31 2020 13:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99637 * 2 1 4 4 H 1.48494 * 109.47228 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47000 * 119.99552 * 3 2 1 6 6 H 1.48493 * 109.46907 * 239.99443 * 3 2 1 7 7 C 1.38806 * 120.00103 * 179.71988 * 2 1 3 8 8 H 1.08002 * 120.00167 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00202 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99972 * 180.02562 * 9 7 2 11 11 H 1.08995 * 109.47256 * 34.99759 * 10 9 7 12 12 C 1.52997 * 109.47036 * 274.99761 * 10 9 7 13 13 C 1.53003 * 109.47241 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.47087 * 59.99958 * 13 12 10 15 15 C 1.52997 * 109.47114 * 300.00120 * 14 13 12 16 16 H 1.09004 * 109.46812 * 300.00187 * 15 14 13 17 17 N 1.46503 * 109.47302 * 180.02562 * 15 14 13 18 18 C 1.34770 * 120.00160 * 84.99574 * 17 15 14 19 19 O 1.21603 * 120.00266 * 0.02562 * 18 17 15 20 20 C 1.47429 * 120.00059 * 180.02562 * 18 17 15 21 21 C 1.41287 * 126.41466 * 359.68266 * 20 18 17 22 22 N 1.30453 * 108.02633 * 179.85422 * 21 20 18 23 23 N 1.39939 * 108.89126 * 0.41617 * 22 21 20 24 24 C 1.46503 * 125.74909 * 179.73248 * 23 22 21 25 25 C 1.52998 * 109.47238 * 304.99571 * 24 23 22 26 26 F 1.39900 * 109.46887 * 180.02562 * 25 24 23 27 27 C 1.34258 * 108.49464 * 359.73198 * 23 22 21 28 28 C 1.52994 * 109.47259 * 60.00168 * 15 14 13 29 29 H 0.97005 * 119.99717 * 179.97438 * 1 2 3 30 30 H 0.97001 * 119.99643 * 359.97438 * 9 7 2 31 31 H 1.09009 * 109.47238 * 300.00198 * 12 10 9 32 32 H 1.08997 * 109.47293 * 60.00168 * 12 10 9 33 33 H 1.08997 * 109.46962 * 179.97438 * 13 12 10 34 34 H 1.08995 * 109.46928 * 299.99922 * 13 12 10 35 35 H 1.09004 * 109.47434 * 59.99926 * 14 13 12 36 36 H 1.09003 * 109.47147 * 180.02562 * 14 13 12 37 37 H 0.97005 * 119.99662 * 265.00201 * 17 15 14 38 38 H 1.08005 * 125.98740 * 0.02562 * 21 20 18 39 39 H 1.08998 * 109.47147 * 65.00171 * 24 23 22 40 40 H 1.09001 * 109.46528 * 184.99587 * 24 23 22 41 41 H 1.08998 * 109.47541 * 300.00359 * 25 24 23 42 42 H 1.09003 * 109.46834 * 60.00559 * 25 24 23 43 43 H 1.08000 * 126.29410 * 179.97438 * 27 23 22 44 44 H 1.09002 * 109.47650 * 180.02562 * 28 15 14 45 45 H 1.08994 * 109.47579 * 59.99817 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2851 2.7465 -0.0006 5 1 3.1038 1.6966 1.2126 6 1 3.1039 1.6964 -1.2124 7 6 2.0103 -1.2021 0.0059 8 1 3.0903 -1.2021 0.0063 9 7 1.3257 -2.3880 0.0111 10 6 2.0582 -3.6566 0.0179 11 1 2.9685 -3.5475 0.6075 12 6 2.4232 -4.0425 -1.4169 13 6 3.1877 -5.3678 -1.4100 14 6 2.3096 -6.4599 -0.7958 15 6 1.9447 -6.0740 0.6390 16 1 2.8550 -5.9653 1.2287 17 7 1.1044 -7.1200 1.2273 18 6 1.6736 -8.1993 1.7995 19 8 2.8847 -8.3048 1.8279 20 6 0.8279 -9.2522 2.3910 21 6 -0.5840 -9.2656 2.4390 22 7 -0.9573 -10.3631 3.0373 23 7 0.1815 -11.0890 3.4039 24 6 0.1875 -12.3766 4.1027 25 6 -0.6123 -12.2558 5.4014 26 9 -0.6061 -13.4852 6.0690 27 6 1.2676 -10.4067 3.0071 28 6 1.1802 -4.7488 0.6320 29 1 -0.4850 -0.8401 -0.0004 30 1 0.3557 -2.3880 0.0111 31 1 1.5129 -4.1516 -2.0066 32 1 3.0484 -3.2643 -1.8546 33 1 3.4473 -5.6428 -2.4322 34 1 4.0979 -5.2590 -0.8203 35 1 1.3993 -6.5686 -1.3855 36 1 2.8545 -7.4039 -0.7905 37 1 0.1383 -7.0358 1.2049 38 1 -1.2397 -8.5023 2.0464 39 1 -0.2649 -13.1374 3.4667 40 1 1.2145 -12.6599 4.3335 41 1 -0.1598 -11.4950 6.0374 42 1 -1.6393 -11.9725 5.1705 43 1 2.2961 -10.7057 3.1450 44 1 0.9205 -4.4737 1.6543 45 1 0.2699 -4.8575 0.0424 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981183882.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:07 Heat of formation + Delta-G solvation = -38.209276 kcal Electronic energy + Delta-G solvation = -26631.860887 eV Core-core repulsion = 22598.923293 eV Total energy + Delta-G solvation = -4032.937594 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.170 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.80292 -42.45523 -40.76313 -39.15382 -36.45141 -35.35939 -34.79783 -32.87133 -31.64026 -31.00808 -29.81815 -29.04078 -25.63259 -25.03531 -24.25842 -23.26088 -22.43017 -21.77611 -21.23518 -20.70566 -19.45599 -18.96574 -17.53447 -17.48034 -17.34392 -16.67972 -16.51723 -16.21614 -16.01261 -15.75966 -15.61937 -15.50209 -15.25191 -15.13798 -14.85837 -14.65755 -14.15816 -13.99087 -13.72434 -13.56194 -13.37447 -12.82612 -12.66450 -12.65230 -12.28845 -12.20663 -12.11024 -11.91438 -11.85350 -11.69806 -11.61749 -11.49958 -11.19626 -10.86968 -10.81338 -10.67644 -10.12884 -9.70730 -9.08825 -8.36016 -5.29394 0.46002 1.10689 1.19524 1.59274 1.68807 1.85132 2.24416 2.45581 2.72984 3.12532 3.42088 3.54168 3.56447 3.72079 3.74162 3.83652 3.95826 3.99705 4.03839 4.14667 4.19435 4.23647 4.27230 4.38037 4.48513 4.49863 4.53147 4.62661 4.70679 4.73356 4.74721 4.98071 5.11176 5.14161 5.18494 5.31995 5.33780 5.46305 5.50258 5.60398 5.65282 5.73557 6.41345 6.53759 6.65061 7.13388 7.31075 8.03970 8.14564 9.16238 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.022990 B = 0.002044 C = 0.001945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.628752 B =13697.701782 C =14391.002749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.976 5.976 2 C -0.106 4.106 3 Si 1.125 2.875 4 H -0.293 1.293 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.326 4.326 8 H 0.063 0.937 9 N -0.748 5.748 10 C 0.181 3.819 11 H 0.033 0.967 12 C -0.125 4.125 13 C -0.106 4.106 14 C -0.115 4.115 15 C 0.163 3.837 16 H 0.068 0.932 17 N -0.710 5.710 18 C 0.595 3.405 19 O -0.590 6.590 20 C -0.312 4.312 21 C 0.091 3.909 22 N -0.318 5.318 23 N -0.361 5.361 24 C 0.098 3.902 25 C 0.056 3.944 26 F -0.216 7.216 27 C 0.140 3.860 28 C -0.115 4.115 29 H 0.245 0.755 30 H 0.361 0.639 31 H 0.053 0.947 32 H 0.038 0.962 33 H 0.076 0.924 34 H 0.057 0.943 35 H 0.074 0.926 36 H 0.063 0.937 37 H 0.412 0.588 38 H 0.214 0.786 39 H 0.111 0.889 40 H 0.139 0.861 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.210 0.790 44 H 0.060 0.940 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.024 -28.171 6.375 28.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.297 4.297 3 Si 0.950 3.050 4 H -0.219 1.219 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.458 4.458 8 H 0.081 0.919 9 N -0.389 5.389 10 C 0.072 3.928 11 H 0.051 0.949 12 C -0.166 4.166 13 C -0.145 4.145 14 C -0.154 4.154 15 C 0.057 3.943 16 H 0.086 0.914 17 N -0.360 5.360 18 C 0.384 3.616 19 O -0.472 6.472 20 C -0.326 4.326 21 C -0.097 4.097 22 N -0.138 5.138 23 N -0.139 5.139 24 C -0.022 4.022 25 C 0.000 4.000 26 F -0.198 7.198 27 C -0.012 4.012 28 C -0.154 4.154 29 H 0.055 0.945 30 H 0.193 0.807 31 H 0.072 0.928 32 H 0.057 0.943 33 H 0.095 0.905 34 H 0.076 0.924 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.248 0.752 38 H 0.231 0.769 39 H 0.129 0.871 40 H 0.157 0.843 41 H 0.105 0.895 42 H 0.105 0.895 43 H 0.226 0.774 44 H 0.079 0.921 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.055 -27.468 6.913 28.325 hybrid contribution 0.007 -0.859 -0.314 0.915 sum -0.048 -28.328 6.599 29.086 Atomic orbital electron populations 1.70992 1.07044 1.27913 1.56492 1.27107 0.97193 1.04475 1.00926 0.82656 0.73405 0.71898 0.77044 1.21912 1.20584 1.20529 1.20338 0.92175 0.87102 1.46150 0.91937 1.42589 1.04647 1.01647 1.90042 1.20256 0.93748 0.84398 0.94353 0.94868 1.22073 0.99614 0.96493 0.98378 1.21412 0.98103 0.93629 1.01345 1.21809 1.00422 0.98286 0.94868 1.20688 0.93655 0.85622 0.94315 0.91357 1.45722 1.10884 1.20573 1.58833 1.17499 0.86583 0.81078 0.76414 1.90753 1.15791 1.79347 1.61265 1.20215 0.94023 1.00411 1.17993 1.24504 0.93737 0.95858 0.95575 1.77159 1.08358 1.07319 1.20923 1.48467 1.03623 1.18145 1.43664 1.22581 1.05765 0.80711 0.93164 1.22136 1.03260 0.82329 0.92253 1.92790 1.98091 1.46860 1.82030 1.23352 0.94634 0.90544 0.92643 1.21881 0.99140 0.93145 1.01216 0.94459 0.80725 0.92839 0.94325 0.90531 0.92376 0.90744 0.91795 0.75193 0.76931 0.87122 0.84289 0.89462 0.89494 0.77368 0.92126 0.90489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -60.86 13.70 21.65 0.30 -60.57 16 2 C -0.11 -6.16 5.50 84.86 0.47 -5.69 16 3 Si 1.12 52.33 29.92 68.60 2.05 54.38 16 4 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 5 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 6 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 7 C -0.33 -18.34 9.93 84.03 0.83 -17.51 16 8 H 0.06 3.47 7.83 -2.91 -0.02 3.45 16 9 N -0.75 -37.12 5.12 -322.95 -1.65 -38.77 16 10 C 0.18 7.06 2.77 44.99 0.12 7.18 16 11 H 0.03 1.40 8.08 -2.39 -0.02 1.38 16 12 C -0.13 -4.37 5.50 30.59 0.17 -4.20 16 13 C -0.11 -2.89 5.92 30.59 0.18 -2.71 16 14 C -0.12 -2.86 5.49 30.59 0.17 -2.69 16 15 C 0.16 4.30 2.45 44.99 0.11 4.41 16 16 H 0.07 2.13 7.57 -2.39 -0.02 2.11 16 17 N -0.71 -15.27 5.07 -445.81 -2.26 -17.53 16 18 C 0.60 14.30 7.78 86.67 0.67 14.98 16 19 O -0.59 -18.53 16.56 -4.04 -0.07 -18.60 16 20 C -0.31 -5.71 6.13 -20.15 -0.12 -5.83 16 21 C 0.09 1.39 11.50 85.65 0.99 2.38 16 22 N -0.32 -5.21 12.33 -56.27 -0.69 -5.91 16 23 N -0.36 -4.51 3.65 -346.29 -1.26 -5.78 16 24 C 0.10 0.60 6.94 86.38 0.60 1.20 16 25 C 0.06 0.45 7.73 71.98 0.56 1.00 16 26 F -0.22 -2.58 17.36 44.97 0.78 -1.80 16 27 C 0.14 2.00 11.25 84.28 0.95 2.95 16 28 C -0.12 -3.48 4.86 30.59 0.15 -3.33 16 29 H 0.24 15.10 6.77 -92.70 -0.63 14.47 16 30 H 0.36 18.47 6.63 -92.71 -0.61 17.85 16 31 H 0.05 1.85 8.14 -2.38 -0.02 1.84 16 32 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.41 6.50 7.56 -92.70 -0.70 5.80 16 38 H 0.21 1.97 7.50 -2.91 -0.02 1.95 16 39 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 40 H 0.14 0.12 8.06 -2.39 -0.02 0.10 16 41 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 42 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.21 2.02 8.06 -2.91 -0.02 2.00 16 44 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 45 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -76.32 376.41 2.87 -73.45 By element: Atomic # 1 Polarization: 29.15 SS G_CDS: -0.16 Total: 28.99 kcal Atomic # 6 Polarization: -13.71 SS G_CDS: 5.84 Total: -7.87 kcal Atomic # 7 Polarization: -122.98 SS G_CDS: -5.57 Total: -128.55 kcal Atomic # 8 Polarization: -18.53 SS G_CDS: -0.07 Total: -18.60 kcal Atomic # 9 Polarization: -2.58 SS G_CDS: 0.78 Total: -1.80 kcal Atomic # 14 Polarization: 52.33 SS G_CDS: 2.05 Total: 54.38 kcal Total: -76.32 2.87 -73.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981183882.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.242 kcal (2) G-P(sol) polarization free energy of solvation -76.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds