Wall clock time and date at job start Tue Mar 31 2020 13:50:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31616 * 1
3 3 Si 1.86804 * 120.00011 * 2 1
4 4 H 1.48499 * 109.47017 * 240.00376 * 3 2 1
5 5 H 1.48501 * 109.46963 * 359.97438 * 3 2 1
6 6 H 1.48495 * 109.47556 * 120.00202 * 3 2 1
7 7 C 1.38810 * 120.00309 * 179.97438 * 2 1 3
8 8 H 1.07998 * 120.00220 * 179.97438 * 7 2 1
9 9 N 1.36937 * 119.99862 * 359.97438 * 7 2 1
10 10 C 1.46496 * 120.00259 * 179.97438 * 9 7 2
11 11 H 1.09002 * 109.47404 * 324.99778 * 10 9 7
12 12 C 1.52997 * 109.47126 * 84.99935 * 10 9 7
13 13 C 1.53005 * 109.47302 * 180.02562 * 12 10 9
14 14 C 1.53000 * 109.46939 * 300.00277 * 13 12 10
15 15 C 1.52997 * 109.47350 * 59.99752 * 14 13 12
16 16 H 1.09001 * 109.46979 * 59.99905 * 15 14 13
17 17 N 1.46499 * 109.46898 * 179.97438 * 15 14 13
18 18 C 1.34777 * 120.00195 * 274.99732 * 17 15 14
19 19 O 1.21603 * 119.99960 * 0.02562 * 18 17 15
20 20 C 1.47433 * 120.00122 * 180.27836 * 18 17 15
21 21 C 1.41293 * 126.40941 * 359.74955 * 20 18 17
22 22 N 1.30455 * 108.01897 * 179.97438 * 21 20 18
23 23 N 1.39936 * 108.89677 * 0.02562 * 22 21 20
24 24 C 1.46501 * 125.75229 * 180.02562 * 23 22 21
25 25 C 1.53001 * 109.47023 * 304.97040 * 24 23 22
26 26 F 1.39895 * 109.47147 * 180.02562 * 25 24 23
27 27 C 1.34259 * 108.49178 * 359.74673 * 23 22 21
28 28 C 1.52994 * 109.47180 * 299.99700 * 15 14 13
29 29 H 0.97000 * 120.00069 * 0.02562 * 1 2 3
30 30 H 0.97008 * 120.00034 * 359.97438 * 9 7 2
31 31 H 1.09001 * 109.46979 * 60.00199 * 12 10 9
32 32 H 1.08998 * 109.47338 * 300.00071 * 12 10 9
33 33 H 1.08998 * 109.47292 * 180.02562 * 13 12 10
34 34 H 1.09001 * 109.47005 * 60.00136 * 13 12 10
35 35 H 1.09001 * 109.47157 * 299.99766 * 14 13 12
36 36 H 1.09000 * 109.46923 * 180.02562 * 14 13 12
37 37 H 0.97000 * 120.00069 * 95.00460 * 17 15 14
38 38 H 1.08001 * 125.99494 * 0.02562 * 21 20 18
39 39 H 1.09000 * 109.47366 * 64.97189 * 24 23 22
40 40 H 1.08997 * 109.46818 * 184.97317 * 24 23 22
41 41 H 1.09000 * 109.47172 * 300.00268 * 25 24 23
42 42 H 1.09009 * 109.46938 * 60.00069 * 25 24 23
43 43 H 1.07996 * 126.29337 * 180.24321 * 27 23 22
44 44 H 1.08998 * 109.47170 * 179.97438 * 28 15 14
45 45 H 1.09002 * 109.47707 * 300.00375 * 28 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6178 0.0000
4 1 3.1038 1.6964 -1.2125
5 1 1.2852 2.7465 -0.0006
6 1 3.1040 1.6965 1.2124
7 6 2.0103 -1.2021 0.0005
8 1 3.0903 -1.2021 0.0001
9 7 1.3256 -2.3880 0.0016
10 6 2.0581 -3.6567 0.0016
11 1 2.9683 -3.5508 -0.5886
12 6 2.4231 -4.0349 1.4385
13 6 3.1886 -5.3596 1.4385
14 6 2.3115 -6.4555 0.8297
15 6 1.9465 -6.0774 -0.6071
16 1 2.8568 -5.9709 -1.1972
17 7 1.1071 -7.1270 -1.1901
18 6 1.6773 -8.2088 -1.7567
19 8 2.8885 -8.3138 -1.7837
20 6 0.8327 -9.2622 -2.3488
21 6 -0.5795 -9.2790 -2.3929
22 7 -0.9514 -10.3741 -2.9966
23 7 0.1880 -11.0998 -3.3616
24 6 0.1954 -12.3872 -4.0606
25 6 -0.6552 -13.3942 -3.2837
26 9 -0.6478 -14.6237 -3.9509
27 6 1.2735 -10.4143 -2.9686
28 6 1.1809 -4.7527 -0.6071
29 1 -0.4850 0.8400 -0.0004
30 1 0.3555 -2.3881 0.0023
31 1 1.5128 -4.1409 2.0286
32 1 3.0483 -3.2544 1.8720
33 1 3.4483 -5.6293 2.4621
34 1 4.0989 -5.2532 0.8484
35 1 1.4012 -6.5619 1.4198
36 1 2.8567 -7.3994 0.8302
37 1 0.1410 -7.0434 -1.1683
38 1 -1.2359 -8.5182 -1.9971
39 1 -0.2166 -12.2595 -5.0617
40 1 1.2187 -12.7554 -4.1330
41 1 -0.2433 -13.5219 -2.2827
42 1 -1.6786 -13.0259 -3.2113
43 1 2.3024 -10.7108 -3.1093
44 1 0.9213 -4.4831 -1.6308
45 1 0.2706 -4.8591 -0.0170
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000981183883.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:50:12
Heat of formation + Delta-G solvation = -14.851090 kcal
Electronic energy + Delta-G solvation = -26584.269360 eV
Core-core repulsion = 22552.344653 eV
Total energy + Delta-G solvation = -4031.924707 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 324.170 amu
Computer time = 0.69 seconds
Orbital eigenvalues (eV)
-48.33587 -41.77656 -39.62044 -37.78264 -34.80031 -34.58112 -33.26904 -31.12334
-30.88930 -30.09909 -28.78405 -27.68994 -24.50269 -23.79655 -23.31180 -21.91528
-21.27643 -20.91982 -20.15263 -19.40087 -18.33172 -17.13988 -17.04617 -16.68058
-16.14094 -16.04319 -15.63221 -15.21482 -14.89670 -14.57393 -14.38442 -14.29587
-13.86398 -13.74805 -13.56481 -13.32922 -13.18579 -13.05721 -12.65110 -12.19211
-12.10484 -12.02306 -11.70171 -11.31811 -10.97871 -10.90348 -10.85034 -10.69360
-10.32176 -10.26741 -10.14880 -10.05742 -10.05632 -9.68790 -9.56474 -9.16690
-8.88438 -8.80335 -6.94645 -5.75487 -3.03913 1.15604 1.73517 1.84661
3.23825 3.37373 3.45312 3.49816 3.50564 3.57827 3.91000 4.23880
4.30159 4.36350 4.52238 4.59525 4.68900 4.83096 4.99971 5.03083
5.12978 5.15061 5.32763 5.41285 5.52865 5.64055 5.72056 5.79211
5.90959 5.98920 6.01019 6.06518 6.17499 6.30522 6.34419 6.37948
6.55154 6.58255 6.67721 6.76075 6.99423 7.07846 7.15084 7.59740
7.71860 8.29559 8.43394 9.54451 10.12064 10.46791 11.47177
Molecular weight = 324.17amu
Principal moments of inertia in cm(-1)
A = 0.027505 B = 0.001993 C = 0.001920
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1017.746733 B =14046.933873 C =14577.002853
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.934 5.934
2 C -0.014 4.014
3 Si 0.906 3.094
4 H -0.286 1.286
5 H -0.292 1.292
6 H -0.286 1.286
7 C -0.237 4.237
8 H 0.070 0.930
9 N -0.724 5.724
10 C 0.183 3.817
11 H 0.048 0.952
12 C -0.137 4.137
13 C -0.115 4.115
14 C -0.123 4.123
15 C 0.151 3.849
16 H 0.088 0.912
17 N -0.718 5.718
18 C 0.593 3.407
19 O -0.551 6.551
20 C -0.286 4.286
21 C 0.088 3.912
22 N -0.298 5.298
23 N -0.367 5.367
24 C 0.102 3.898
25 C 0.053 3.947
26 F -0.207 7.207
27 C 0.130 3.870
28 C -0.129 4.129
29 H 0.255 0.745
30 H 0.383 0.617
31 H 0.054 0.946
32 H 0.062 0.938
33 H 0.056 0.944
34 H 0.059 0.941
35 H 0.060 0.940
36 H 0.059 0.941
37 H 0.397 0.603
38 H 0.193 0.807
39 H 0.102 0.898
40 H 0.112 0.888
41 H 0.083 0.917
42 H 0.093 0.907
43 H 0.190 0.810
44 H 0.068 0.932
45 H 0.064 0.936
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.811 -26.915 -5.172 27.420
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.583 5.583
2 C -0.210 4.210
3 Si 0.737 3.263
4 H -0.213 1.213
5 H -0.218 1.218
6 H -0.213 1.213
7 C -0.368 4.368
8 H 0.088 0.912
9 N -0.364 5.364
10 C 0.073 3.927
11 H 0.066 0.934
12 C -0.177 4.177
13 C -0.153 4.153
14 C -0.162 4.162
15 C 0.047 3.953
16 H 0.106 0.894
17 N -0.368 5.368
18 C 0.380 3.620
19 O -0.430 6.430
20 C -0.301 4.301
21 C -0.100 4.100
22 N -0.117 5.117
23 N -0.146 5.146
24 C -0.020 4.020
25 C -0.003 4.003
26 F -0.188 7.188
27 C -0.020 4.020
28 C -0.168 4.168
29 H 0.065 0.935
30 H 0.217 0.783
31 H 0.073 0.927
32 H 0.081 0.919
33 H 0.074 0.926
34 H 0.078 0.922
35 H 0.079 0.921
36 H 0.078 0.922
37 H 0.231 0.769
38 H 0.210 0.790
39 H 0.120 0.880
40 H 0.130 0.870
41 H 0.101 0.899
42 H 0.111 0.889
43 H 0.207 0.793
44 H 0.087 0.913
45 H 0.083 0.917
Dipole moment (debyes) X Y Z Total
from point charges -0.835 -27.679 -5.708 28.274
hybrid contribution 0.300 1.433 0.301 1.495
sum -0.536 -26.246 -5.407 26.803
Atomic orbital electron populations
1.69646 1.05083 1.25713 1.57821 1.24731 0.95513 0.97653 1.03121
0.86280 0.78523 0.83619 0.77850 1.21298 1.21754 1.21296 1.19203
0.90997 0.84092 1.42529 0.91200 1.42392 1.05731 0.99698 1.88620
1.20100 0.94123 0.85535 0.92975 0.93371 1.22289 0.99698 0.95245
1.00473 1.21488 0.98545 0.95392 0.99914 1.21881 1.00076 0.98792
0.95467 1.21014 0.94451 0.85923 0.93927 0.89408 1.45922 1.10359
1.21000 1.59496 1.17187 0.86859 0.80834 0.77079 1.90774 1.14056
1.78572 1.59582 1.20371 0.93609 1.00303 1.15830 1.24167 0.94082
0.95656 0.96119 1.77175 1.07302 1.07078 1.20138 1.48258 1.04300
1.17256 1.44833 1.22317 1.03723 0.79331 0.96603 1.22154 1.03025
0.79528 0.95565 1.92808 1.98029 1.45006 1.82939 1.23013 0.93677
0.91479 0.93823 1.22091 0.99343 0.93369 1.02024 0.93520 0.78339
0.92674 0.91950 0.92573 0.92183 0.92091 0.92177 0.76861 0.78996
0.88025 0.86992 0.89919 0.88910 0.79314 0.91285 0.91699
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -27.91 13.06 55.49 0.72 -27.19 16
2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16
3 Si 0.91 22.32 29.55 -169.99 -5.02 17.30 16
4 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16
5 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16
6 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16
7 C -0.24 -6.49 9.93 -15.06 -0.15 -6.64 16
8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16
9 N -0.72 -17.67 5.12 -53.43 -0.27 -17.95 16
10 C 0.18 3.51 2.77 -67.93 -0.19 3.32 16
11 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16
12 C -0.14 -2.38 5.50 -26.73 -0.15 -2.52 16
13 C -0.11 -1.63 5.92 -26.73 -0.16 -1.79 16
14 C -0.12 -1.64 5.49 -26.73 -0.15 -1.79 16
15 C 0.15 2.07 2.45 -67.94 -0.17 1.90 16
16 H 0.09 1.37 7.58 -51.93 -0.39 0.98 16
17 N -0.72 -8.27 5.07 -54.88 -0.28 -8.55 16
18 C 0.59 7.50 7.78 -12.52 -0.10 7.40 16
19 O -0.55 -8.86 16.56 5.27 0.09 -8.77 16
20 C -0.29 -2.87 6.13 -105.06 -0.64 -3.51 16
21 C 0.09 0.76 11.50 -16.98 -0.20 0.56 16
22 N -0.30 -2.72 12.33 30.86 0.38 -2.34 16
23 N -0.37 -2.71 3.65 -60.81 -0.22 -2.93 16
24 C 0.10 0.44 6.94 -4.04 -0.03 0.41 16
25 C 0.05 0.25 7.73 37.16 0.29 0.53 16
26 F -0.21 -1.36 17.36 2.25 0.04 -1.32 16
27 C 0.13 1.07 11.25 -16.56 -0.19 0.89 16
28 C -0.13 -2.00 4.86 -26.73 -0.13 -2.13 16
29 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16
30 H 0.38 9.89 7.80 -40.82 -0.32 9.57 16
31 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16
32 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16
33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16
34 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16
35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16
36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16
37 H 0.40 3.56 7.56 -40.82 -0.31 3.25 16
38 H 0.19 1.11 7.50 -52.49 -0.39 0.72 16
39 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16
40 H 0.11 0.23 8.06 -51.93 -0.42 -0.19 16
41 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16
42 H 0.09 0.47 8.14 -51.92 -0.42 0.05 16
43 H 0.19 1.15 8.06 -52.49 -0.42 0.73 16
44 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16
45 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16
LS Contribution 378.12 15.07 5.70 5.70
Total: -1.00 -33.98 378.12 -7.78 -41.77
By element:
Atomic # 1 Polarization: 15.03 SS G_CDS: -6.87 Total: 8.16 kcal
Atomic # 6 Polarization: -1.82 SS G_CDS: -2.05 Total: -3.87 kcal
Atomic # 7 Polarization: -59.30 SS G_CDS: 0.33 Total: -58.96 kcal
Atomic # 8 Polarization: -8.86 SS G_CDS: 0.09 Total: -8.77 kcal
Atomic # 9 Polarization: -1.36 SS G_CDS: 0.04 Total: -1.32 kcal
Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal
Total LS contribution 5.70 Total: 5.70 kcal
Total: -33.98 -7.78 -41.77 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000981183883.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 26.914 kcal
(2) G-P(sol) polarization free energy of solvation -33.980 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.066 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.785 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.765 kcal
(6) G-S(sol) free energy of system = (1) + (5) -14.851 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.69 seconds