Wall clock time and date at job start Tue Mar 31 2020 13:50:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31616 * 1
3 3 Si 1.86804 * 120.00011 * 2 1
4 4 H 1.48499 * 109.47017 * 240.00376 * 3 2 1
5 5 H 1.48501 * 109.46963 * 359.97438 * 3 2 1
6 6 H 1.48495 * 109.47556 * 120.00202 * 3 2 1
7 7 C 1.38810 * 120.00309 * 179.97438 * 2 1 3
8 8 H 1.07998 * 120.00220 * 179.97438 * 7 2 1
9 9 N 1.36937 * 119.99862 * 359.97438 * 7 2 1
10 10 C 1.46496 * 120.00259 * 179.97438 * 9 7 2
11 11 H 1.09002 * 109.47404 * 324.99778 * 10 9 7
12 12 C 1.52997 * 109.47126 * 84.99935 * 10 9 7
13 13 C 1.53005 * 109.47302 * 180.02562 * 12 10 9
14 14 C 1.53000 * 109.46939 * 300.00277 * 13 12 10
15 15 C 1.52997 * 109.47350 * 59.99752 * 14 13 12
16 16 H 1.09001 * 109.46979 * 59.99905 * 15 14 13
17 17 N 1.46499 * 109.46898 * 179.97438 * 15 14 13
18 18 C 1.34777 * 120.00195 * 274.99732 * 17 15 14
19 19 O 1.21603 * 119.99960 * 0.02562 * 18 17 15
20 20 C 1.47433 * 120.00122 * 180.27836 * 18 17 15
21 21 C 1.41293 * 126.40941 * 359.74955 * 20 18 17
22 22 N 1.30455 * 108.01897 * 179.97438 * 21 20 18
23 23 N 1.39936 * 108.89677 * 0.02562 * 22 21 20
24 24 C 1.46501 * 125.75229 * 180.02562 * 23 22 21
25 25 C 1.53001 * 109.47023 * 304.97040 * 24 23 22
26 26 F 1.39895 * 109.47147 * 180.02562 * 25 24 23
27 27 C 1.34259 * 108.49178 * 359.74673 * 23 22 21
28 28 C 1.52994 * 109.47180 * 299.99700 * 15 14 13
29 29 H 0.97000 * 120.00069 * 0.02562 * 1 2 3
30 30 H 0.97008 * 120.00034 * 359.97438 * 9 7 2
31 31 H 1.09001 * 109.46979 * 60.00199 * 12 10 9
32 32 H 1.08998 * 109.47338 * 300.00071 * 12 10 9
33 33 H 1.08998 * 109.47292 * 180.02562 * 13 12 10
34 34 H 1.09001 * 109.47005 * 60.00136 * 13 12 10
35 35 H 1.09001 * 109.47157 * 299.99766 * 14 13 12
36 36 H 1.09000 * 109.46923 * 180.02562 * 14 13 12
37 37 H 0.97000 * 120.00069 * 95.00460 * 17 15 14
38 38 H 1.08001 * 125.99494 * 0.02562 * 21 20 18
39 39 H 1.09000 * 109.47366 * 64.97189 * 24 23 22
40 40 H 1.08997 * 109.46818 * 184.97317 * 24 23 22
41 41 H 1.09000 * 109.47172 * 300.00268 * 25 24 23
42 42 H 1.09009 * 109.46938 * 60.00069 * 25 24 23
43 43 H 1.07996 * 126.29337 * 180.24321 * 27 23 22
44 44 H 1.08998 * 109.47170 * 179.97438 * 28 15 14
45 45 H 1.09002 * 109.47707 * 300.00375 * 28 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6178 0.0000
4 1 3.1038 1.6964 -1.2125
5 1 1.2852 2.7465 -0.0006
6 1 3.1040 1.6965 1.2124
7 6 2.0103 -1.2021 0.0005
8 1 3.0903 -1.2021 0.0001
9 7 1.3256 -2.3880 0.0016
10 6 2.0581 -3.6567 0.0016
11 1 2.9683 -3.5508 -0.5886
12 6 2.4231 -4.0349 1.4385
13 6 3.1886 -5.3596 1.4385
14 6 2.3115 -6.4555 0.8297
15 6 1.9465 -6.0774 -0.6071
16 1 2.8568 -5.9709 -1.1972
17 7 1.1071 -7.1270 -1.1901
18 6 1.6773 -8.2088 -1.7567
19 8 2.8885 -8.3138 -1.7837
20 6 0.8327 -9.2622 -2.3488
21 6 -0.5795 -9.2790 -2.3929
22 7 -0.9514 -10.3741 -2.9966
23 7 0.1880 -11.0998 -3.3616
24 6 0.1954 -12.3872 -4.0606
25 6 -0.6552 -13.3942 -3.2837
26 9 -0.6478 -14.6237 -3.9509
27 6 1.2735 -10.4143 -2.9686
28 6 1.1809 -4.7527 -0.6071
29 1 -0.4850 0.8400 -0.0004
30 1 0.3555 -2.3881 0.0023
31 1 1.5128 -4.1409 2.0286
32 1 3.0483 -3.2544 1.8720
33 1 3.4483 -5.6293 2.4621
34 1 4.0989 -5.2532 0.8484
35 1 1.4012 -6.5619 1.4198
36 1 2.8567 -7.3994 0.8302
37 1 0.1410 -7.0434 -1.1683
38 1 -1.2359 -8.5182 -1.9971
39 1 -0.2166 -12.2595 -5.0617
40 1 1.2187 -12.7554 -4.1330
41 1 -0.2433 -13.5219 -2.2827
42 1 -1.6786 -13.0259 -3.2113
43 1 2.3024 -10.7108 -3.1093
44 1 0.9213 -4.4831 -1.6308
45 1 0.2706 -4.8591 -0.0170
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000981183883.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:50:11
Heat of formation + Delta-G solvation = -37.494702 kcal
Electronic energy + Delta-G solvation = -26585.251261 eV
Core-core repulsion = 22552.344653 eV
Total energy + Delta-G solvation = -4032.906607 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 324.170 amu
Computer time = 0.88 seconds
Orbital eigenvalues (eV)
-48.78532 -42.42439 -40.69604 -39.05560 -36.17345 -35.31207 -34.66337 -32.90512
-31.60297 -30.96707 -29.89137 -29.11075 -25.69672 -25.00907 -24.21754 -23.14512
-22.28041 -21.73751 -21.17451 -20.64127 -19.31666 -18.81152 -17.51481 -17.45584
-17.21589 -16.67677 -16.44909 -16.17880 -15.99780 -15.84264 -15.42490 -15.30739
-15.05793 -14.98877 -14.86523 -14.57811 -14.14386 -13.92163 -13.73714 -13.48426
-13.35347 -12.87846 -12.77610 -12.64223 -12.25639 -12.24433 -12.12333 -12.00660
-11.93357 -11.82291 -11.59766 -11.41480 -11.31957 -10.84702 -10.78341 -10.64920
-10.07833 -9.66929 -8.96820 -7.91478 -5.18902 0.49054 1.14184 1.21877
1.48697 1.50954 1.56885 2.29650 2.49545 2.59169 3.15067 3.41662
3.57502 3.68155 3.74685 3.78302 3.92744 3.97986 4.07312 4.10831
4.17371 4.24317 4.32302 4.36499 4.48066 4.52263 4.58625 4.62911
4.70460 4.76323 4.77540 4.81973 5.07939 5.18976 5.22740 5.27290
5.36975 5.40472 5.53391 5.55456 5.59344 5.71189 5.76182 6.31321
6.44427 6.70036 7.35707 7.37610 8.14164 8.37732 9.31619
Molecular weight = 324.17amu
Principal moments of inertia in cm(-1)
A = 0.027505 B = 0.001993 C = 0.001920
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1017.746733 B =14046.933873 C =14577.002853
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.968 5.968
2 C -0.076 4.076
3 Si 0.968 3.032
4 H -0.280 1.280
5 H -0.296 1.296
6 H -0.279 1.279
7 C -0.237 4.237
8 H 0.072 0.928
9 N -0.735 5.735
10 C 0.176 3.824
11 H 0.035 0.965
12 C -0.126 4.126
13 C -0.106 4.106
14 C -0.115 4.115
15 C 0.162 3.838
16 H 0.068 0.932
17 N -0.710 5.710
18 C 0.595 3.405
19 O -0.590 6.590
20 C -0.311 4.311
21 C 0.091 3.909
22 N -0.319 5.319
23 N -0.361 5.361
24 C 0.098 3.902
25 C 0.057 3.943
26 F -0.217 7.217
27 C 0.139 3.861
28 C -0.115 4.115
29 H 0.250 0.750
30 H 0.374 0.626
31 H 0.053 0.947
32 H 0.040 0.960
33 H 0.075 0.925
34 H 0.058 0.942
35 H 0.073 0.927
36 H 0.062 0.938
37 H 0.411 0.589
38 H 0.215 0.785
39 H 0.108 0.892
40 H 0.139 0.861
41 H 0.089 0.911
42 H 0.087 0.913
43 H 0.209 0.791
44 H 0.060 0.940
45 H 0.076 0.924
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.495 -28.576 -5.216 29.053
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.619 5.619
2 C -0.268 4.268
3 Si 0.798 3.202
4 H -0.206 1.206
5 H -0.222 1.222
6 H -0.206 1.206
7 C -0.369 4.369
8 H 0.090 0.910
9 N -0.375 5.375
10 C 0.067 3.933
11 H 0.054 0.946
12 C -0.167 4.167
13 C -0.145 4.145
14 C -0.154 4.154
15 C 0.057 3.943
16 H 0.087 0.913
17 N -0.360 5.360
18 C 0.384 3.616
19 O -0.472 6.472
20 C -0.326 4.326
21 C -0.097 4.097
22 N -0.138 5.138
23 N -0.139 5.139
24 C -0.023 4.023
25 C 0.001 3.999
26 F -0.198 7.198
27 C -0.012 4.012
28 C -0.153 4.153
29 H 0.059 0.941
30 H 0.206 0.794
31 H 0.072 0.928
32 H 0.059 0.941
33 H 0.093 0.907
34 H 0.076 0.924
35 H 0.092 0.908
36 H 0.080 0.920
37 H 0.248 0.752
38 H 0.231 0.769
39 H 0.127 0.873
40 H 0.157 0.843
41 H 0.107 0.893
42 H 0.105 0.895
43 H 0.226 0.774
44 H 0.079 0.921
45 H 0.095 0.905
Dipole moment (debyes) X Y Z Total
from point charges -0.527 -29.395 -5.757 29.958
hybrid contribution 0.224 1.834 0.272 1.868
sum -0.303 -27.560 -5.485 28.102
Atomic orbital electron populations
1.69792 1.06402 1.25957 1.59739 1.25489 0.96371 1.00825 1.04093
0.85286 0.77249 0.79620 0.78073 1.20646 1.22211 1.20557 1.19553
0.91317 0.85353 1.40689 0.91004 1.42565 1.05446 1.00776 1.88697
1.20318 0.93877 0.84776 0.94283 0.94641 1.22095 0.99625 0.96409
0.98529 1.21416 0.98113 0.93752 1.01235 1.21806 1.00413 0.98249
0.94923 1.20712 0.93682 0.85643 0.94304 0.91342 1.45735 1.10916
1.20230 1.59095 1.17495 0.86567 0.81116 0.76432 1.90750 1.15776
1.79462 1.61226 1.20229 0.94020 1.00616 1.17718 1.24513 0.93769
0.95891 0.95480 1.77155 1.08338 1.07536 1.20781 1.48459 1.03651
1.17712 1.44119 1.22577 1.05415 0.77922 0.96365 1.22132 1.02899
0.79043 0.95818 1.92788 1.98058 1.45746 1.83219 1.23344 0.94637
0.90842 0.92417 1.21874 0.99149 0.93005 1.01321 0.94117 0.79420
0.92786 0.94141 0.90683 0.92365 0.90789 0.91959 0.75198 0.76896
0.87341 0.84305 0.89270 0.89501 0.77403 0.92083 0.90533
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.97 -58.71 13.06 21.65 0.28 -58.42 16
2 C -0.08 -4.32 5.50 84.86 0.47 -3.86 16
3 Si 0.97 46.23 29.55 68.60 2.03 48.25 16
4 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16
5 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16
6 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16
7 C -0.24 -13.11 9.93 84.03 0.83 -12.27 16
8 H 0.07 3.86 7.83 -2.91 -0.02 3.83 16
9 N -0.74 -36.31 5.12 -322.94 -1.65 -37.97 16
10 C 0.18 6.76 2.77 44.99 0.12 6.89 16
11 H 0.04 1.45 8.08 -2.39 -0.02 1.43 16
12 C -0.13 -4.33 5.50 30.59 0.17 -4.16 16
13 C -0.11 -2.86 5.92 30.60 0.18 -2.68 16
14 C -0.12 -2.84 5.49 30.59 0.17 -2.67 16
15 C 0.16 4.26 2.45 44.99 0.11 4.37 16
16 H 0.07 2.11 7.58 -2.39 -0.02 2.10 16
17 N -0.71 -15.31 5.07 -445.81 -2.26 -17.57 16
18 C 0.59 14.33 7.78 86.67 0.67 15.00 16
19 O -0.59 -18.56 16.56 -4.04 -0.07 -18.62 16
20 C -0.31 -5.73 6.13 -20.15 -0.12 -5.85 16
21 C 0.09 1.40 11.50 85.65 0.99 2.39 16
22 N -0.32 -5.26 12.33 -56.27 -0.69 -5.96 16
23 N -0.36 -4.56 3.65 -346.30 -1.26 -5.83 16
24 C 0.10 0.61 6.94 86.38 0.60 1.21 16
25 C 0.06 0.43 7.73 71.98 0.56 0.99 16
26 F -0.22 -2.53 17.36 44.97 0.78 -1.75 16
27 C 0.14 2.01 11.25 84.27 0.95 2.96 16
28 C -0.11 -3.46 4.86 30.60 0.15 -3.32 16
29 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16
30 H 0.37 19.61 7.80 -92.70 -0.72 18.89 16
31 H 0.05 1.85 8.14 -2.39 -0.02 1.84 16
32 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16
33 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16
34 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16
35 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16
36 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16
37 H 0.41 6.56 7.56 -92.71 -0.70 5.86 16
38 H 0.21 2.00 7.50 -2.91 -0.02 1.98 16
39 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16
40 H 0.14 0.13 8.06 -2.39 -0.02 0.11 16
41 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16
42 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16
43 H 0.21 2.05 8.06 -2.91 -0.02 2.02 16
44 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16
45 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16
Total: -1.00 -73.34 378.12 2.58 -70.76
By element:
Atomic # 1 Polarization: 28.52 SS G_CDS: -0.41 Total: 28.11 kcal
Atomic # 6 Polarization: -6.85 SS G_CDS: 5.84 Total: -1.01 kcal
Atomic # 7 Polarization: -120.15 SS G_CDS: -5.59 Total: -125.74 kcal
Atomic # 8 Polarization: -18.56 SS G_CDS: -0.07 Total: -18.62 kcal
Atomic # 9 Polarization: -2.53 SS G_CDS: 0.78 Total: -1.75 kcal
Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.25 kcal
Total: -73.34 2.58 -70.76 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000981183883.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 33.266 kcal
(2) G-P(sol) polarization free energy of solvation -73.344 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.078 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.583 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.761 kcal
(6) G-S(sol) free energy of system = (1) + (5) -37.495 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.88 seconds