Wall clock time and date at job start Tue Mar 31 2020 14:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30373 * 125.96864 * 2 1 4 4 N 1.39914 * 109.02232 * 179.75043 * 3 2 1 5 5 C 1.46498 * 125.74334 * 180.24747 * 4 3 2 6 6 C 1.34418 * 108.51397 * 0.38863 * 4 3 2 7 7 F 1.35104 * 126.34255 * 179.88080 * 6 4 3 8 8 C 1.38501 * 107.31182 * 359.62408 * 6 4 3 9 9 C 1.47168 * 126.46002 * 180.26106 * 8 6 4 10 10 O 1.21631 * 119.99815 * 89.96929 * 9 8 6 11 11 N 1.34772 * 119.99990 * 269.97711 * 9 8 6 12 12 C 1.46503 * 120.00105 * 179.97438 * 11 9 8 13 13 H 1.08996 * 109.46900 * 324.99763 * 12 11 9 14 14 C 1.52998 * 109.46753 * 84.99918 * 12 11 9 15 15 C 1.53006 * 109.47073 * 180.02562 * 14 12 11 16 16 C 1.52999 * 109.46830 * 300.00050 * 15 14 12 17 17 C 1.52998 * 109.47334 * 60.00109 * 16 15 14 18 18 H 1.08996 * 109.47544 * 59.99504 * 17 16 15 19 19 N 1.46503 * 109.46878 * 179.97438 * 17 16 15 20 20 C 1.36935 * 119.99773 * 274.99435 * 19 17 16 21 21 H 1.07991 * 119.99913 * 0.02562 * 20 19 17 22 22 C 1.38813 * 119.99823 * 180.02562 * 20 19 17 23 23 N 1.31620 * 119.99873 * 180.02562 * 22 20 19 24 24 Si 1.86803 * 120.00100 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.47020 * 90.00062 * 24 22 20 26 26 H 1.48499 * 109.47379 * 210.00181 * 24 22 20 27 27 H 1.48503 * 109.46927 * 330.00082 * 24 22 20 28 28 C 1.52995 * 109.46942 * 204.99527 * 12 11 9 29 29 H 1.09002 * 109.46722 * 270.02423 * 1 2 3 30 30 H 1.09000 * 109.47283 * 30.02186 * 1 2 3 31 31 H 1.09004 * 109.47422 * 150.02763 * 1 2 3 32 32 H 1.08996 * 109.47460 * 270.16539 * 5 4 3 33 33 H 1.09000 * 109.46964 * 30.16832 * 5 4 3 34 34 H 1.09007 * 109.47511 * 150.16390 * 5 4 3 35 35 H 0.97003 * 120.00025 * 359.97438 * 11 9 8 36 36 H 1.09002 * 109.47149 * 299.99740 * 14 12 11 37 37 H 1.09002 * 109.47881 * 59.99978 * 14 12 11 38 38 H 1.08995 * 109.47382 * 179.97438 * 15 14 12 39 39 H 1.09003 * 109.46603 * 60.00064 * 15 14 12 40 40 H 1.08996 * 109.47210 * 299.99408 * 16 15 14 41 41 H 1.09001 * 109.46548 * 179.97438 * 16 15 14 42 42 H 0.97005 * 119.99718 * 94.99679 * 19 17 16 43 43 H 0.97000 * 119.99404 * 180.02562 * 23 22 20 44 44 H 1.09003 * 109.47845 * 299.99891 * 28 12 11 45 45 H 1.09003 * 109.47368 * 60.00410 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2727 1.0552 0.0000 4 7 3.6111 0.6473 0.0058 5 6 4.7763 1.5353 0.0127 6 6 3.6479 -0.6963 0.0007 7 9 4.7577 -1.4669 0.0015 8 6 2.3374 -1.1445 0.0004 9 6 1.8929 -2.5475 0.0010 10 8 1.7094 -3.1268 1.0546 11 7 1.6895 -3.1904 -1.1659 12 6 1.2475 -4.5871 -1.1653 13 1 1.7001 -5.1110 -0.3235 14 6 -0.2763 -4.6398 -1.0393 15 6 -0.7379 -6.0985 -1.0381 16 6 -0.3107 -6.7697 -2.3450 17 6 1.2131 -6.7170 -2.4710 18 1 1.6657 -7.2405 -1.6289 19 7 1.6221 -7.3602 -3.7221 20 6 1.7965 -8.7176 -3.7690 21 1 1.6321 -9.3140 -2.8838 22 6 2.1845 -9.3270 -4.9543 23 7 2.3516 -10.6318 -4.9995 24 14 2.4682 -8.2955 -6.4856 25 1 3.8874 -7.8613 -6.5341 26 1 2.1563 -9.1037 -7.6917 27 1 1.5861 -7.1013 -6.4484 28 6 1.6746 -5.2576 -2.4725 29 1 -0.3633 0.0004 1.0277 30 1 -0.3634 0.8898 -0.5142 31 1 -0.3634 -0.8902 -0.5134 32 1 5.0684 1.7596 -1.0131 33 1 4.5242 2.4614 0.5294 34 1 5.6032 1.0458 0.5272 35 1 1.8356 -2.7282 -2.0062 36 1 -0.5806 -4.1620 -0.1080 37 1 -0.7290 -4.1158 -1.8812 38 1 -1.8235 -6.1361 -0.9478 39 1 -0.2853 -6.6220 -0.1958 40 1 -0.7633 -6.2462 -3.1871 41 1 -0.6392 -7.8090 -2.3438 42 1 1.7694 -6.8245 -4.5173 43 1 2.6232 -11.0575 -5.8277 44 1 1.2220 -4.7338 -3.3145 45 1 2.7603 -5.2202 -2.5624 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981491279.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:35 Heat of formation + Delta-G solvation = 0.884483 kcal Electronic energy + Delta-G solvation = -27614.826803 eV Core-core repulsion = 23583.584442 eV Total energy + Delta-G solvation = -4031.242361 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.170 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.65994 -41.75575 -39.75507 -37.92357 -34.76307 -34.59952 -33.34616 -31.34817 -30.94034 -30.06288 -29.20810 -28.17047 -26.43538 -23.65350 -23.11155 -21.99441 -21.25024 -20.84471 -20.28775 -19.60456 -18.33598 -17.54849 -17.24431 -16.99449 -16.41030 -16.16975 -15.10883 -15.08285 -14.62126 -14.48927 -14.31597 -14.01968 -13.89722 -13.83625 -13.63826 -13.53365 -13.22838 -13.03852 -12.80454 -12.65772 -12.53098 -12.25171 -12.23657 -11.30900 -11.25522 -11.00839 -10.95908 -10.85639 -10.44389 -10.31790 -10.28575 -10.03972 -9.75788 -9.74207 -9.57778 -9.11471 -9.02961 -8.89003 -7.26586 -5.76173 -3.11739 0.97425 1.50046 1.87898 2.41185 3.15855 3.36908 3.39344 3.44506 3.45151 3.94037 4.35235 4.56238 4.59167 4.66815 4.71087 4.83745 4.85158 4.91447 5.02891 5.23874 5.27056 5.33920 5.43492 5.46416 5.52843 5.60888 5.63521 5.79779 5.82935 5.93743 5.94920 6.07970 6.22036 6.25379 6.26092 6.38819 6.48250 6.54979 6.65773 6.90074 6.95530 7.04354 7.44908 8.00747 8.14261 8.43013 9.21407 9.93826 10.13524 11.42252 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.016768 B = 0.002857 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.483472 B = 9799.552136 C =10688.755108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.133 3.867 3 N -0.272 5.272 4 N -0.375 5.375 5 C 0.092 3.908 6 C 0.295 3.705 7 F -0.086 7.086 8 C -0.290 4.290 9 C 0.598 3.402 10 O -0.527 6.527 11 N -0.713 5.713 12 C 0.148 3.852 13 H 0.091 0.909 14 C -0.124 4.124 15 C -0.115 4.115 16 C -0.137 4.137 17 C 0.188 3.812 18 H 0.058 0.942 19 N -0.749 5.749 20 C -0.241 4.241 21 H 0.091 0.909 22 C 0.003 3.997 23 N -0.934 5.934 24 Si 0.884 3.116 25 H -0.285 1.285 26 H -0.292 1.292 27 H -0.277 1.277 28 C -0.134 4.134 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.101 0.899 34 H 0.092 0.908 35 H 0.400 0.600 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.058 0.942 39 H 0.062 0.938 40 H 0.053 0.947 41 H 0.067 0.933 42 H 0.360 0.640 43 H 0.259 0.741 44 H 0.064 0.936 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.524 27.177 9.748 28.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.033 4.033 3 N -0.095 5.095 4 N -0.160 5.160 5 C -0.048 4.048 6 C 0.148 3.852 7 F -0.065 7.065 8 C -0.306 4.306 9 C 0.381 3.619 10 O -0.402 6.402 11 N -0.363 5.363 12 C 0.044 3.956 13 H 0.109 0.891 14 C -0.163 4.163 15 C -0.153 4.153 16 C -0.177 4.177 17 C 0.078 3.922 18 H 0.076 0.924 19 N -0.390 5.390 20 C -0.371 4.371 21 H 0.109 0.891 22 C -0.192 4.192 23 N -0.582 5.582 24 Si 0.715 3.285 25 H -0.212 1.212 26 H -0.218 1.218 27 H -0.204 1.204 28 C -0.172 4.172 29 H 0.106 0.894 30 H 0.102 0.898 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.119 0.881 34 H 0.111 0.889 35 H 0.234 0.766 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.072 0.928 41 H 0.086 0.914 42 H 0.192 0.808 43 H 0.069 0.931 44 H 0.082 0.918 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.393 27.802 10.558 29.742 hybrid contribution 0.860 -0.077 -1.672 1.882 sum 0.467 27.725 8.886 29.118 Atomic orbital electron populations 1.20338 0.85073 1.04172 1.04157 1.22211 0.97228 0.87945 0.95948 1.77316 0.84123 1.21174 1.26850 1.48683 1.07331 1.02621 1.57320 1.22088 0.83621 0.94674 1.04447 1.17815 0.83422 0.81847 1.02162 1.91687 1.49622 1.71501 1.93720 1.19744 0.90324 0.95800 1.24730 1.16993 0.76950 0.83838 0.84079 1.90815 1.50899 1.67243 1.31279 1.46164 1.68224 1.13816 1.08087 1.21065 0.94779 0.80102 0.99663 0.89101 1.21897 0.94822 0.97863 1.01710 1.21482 1.00173 0.94582 0.99102 1.22253 0.98914 1.00902 0.95661 1.20086 0.92210 0.89567 0.90317 0.92407 1.42771 1.83253 1.05458 1.07562 1.19080 1.38562 0.81725 0.97718 0.89128 1.24675 1.01705 0.95403 0.97449 1.69703 1.53809 1.07910 1.26805 0.86552 0.78028 0.79741 0.84201 1.21172 1.21819 1.20360 1.22146 1.01598 0.97778 0.95724 0.89366 0.89850 0.89745 0.89696 0.88087 0.88924 0.76623 0.91904 0.91995 0.92296 0.91937 0.92772 0.91408 0.80752 0.93093 0.91774 0.91205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.57 10.28 36.00 0.37 -0.20 16 2 C 0.13 1.36 7.26 -82.01 -0.60 0.76 16 3 N -0.27 -2.81 12.49 33.91 0.42 -2.39 16 4 N -0.37 -3.46 3.98 -67.94 -0.27 -3.73 16 5 C 0.09 0.43 11.43 59.85 0.68 1.11 16 6 C 0.29 3.22 8.70 -16.32 -0.14 3.08 16 7 F -0.09 -0.95 17.31 2.25 0.04 -0.91 16 8 C -0.29 -3.39 5.89 -104.97 -0.62 -4.00 16 9 C 0.60 7.98 7.32 -12.64 -0.09 7.89 16 10 O -0.53 -8.95 16.77 5.25 0.09 -8.86 16 11 N -0.71 -8.32 5.07 -54.97 -0.28 -8.59 16 12 C 0.15 1.97 2.45 -67.93 -0.17 1.80 16 13 H 0.09 1.39 7.58 -51.93 -0.39 0.99 16 14 C -0.12 -1.55 5.49 -26.73 -0.15 -1.70 16 15 C -0.11 -1.56 5.92 -26.73 -0.16 -1.72 16 16 C -0.14 -2.29 5.50 -26.73 -0.15 -2.44 16 17 C 0.19 3.47 2.77 -67.90 -0.19 3.28 16 18 H 0.06 1.14 8.08 -51.93 -0.42 0.72 16 19 N -0.75 -17.22 4.93 -53.40 -0.26 -17.49 16 20 C -0.24 -6.70 10.41 -15.06 -0.16 -6.85 16 21 H 0.09 2.71 8.06 -52.49 -0.42 2.28 16 22 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 23 N -0.93 -29.27 13.97 55.49 0.78 -28.50 16 24 Si 0.88 21.90 27.74 -169.99 -4.71 17.18 16 25 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 26 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 27 H -0.28 -6.42 6.52 56.52 0.37 -6.05 16 28 C -0.13 -1.96 4.86 -26.70 -0.13 -2.09 16 29 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.08 0.59 8.01 -51.93 -0.42 0.17 16 32 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 33 H 0.10 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.09 0.30 8.14 -51.92 -0.42 -0.12 16 35 H 0.40 3.81 8.59 -40.82 -0.35 3.46 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 42 H 0.36 8.12 5.66 -40.82 -0.23 7.89 16 43 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 44 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 LS Contribution 376.90 15.07 5.68 5.68 Total: -1.00 -34.71 376.90 -7.00 -41.71 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -6.90 Total: 6.97 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: -1.58 Total: -1.08 kcal Atomic # 7 Polarization: -61.08 SS G_CDS: 0.39 Total: -60.69 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: 0.09 Total: -8.86 kcal Atomic # 9 Polarization: -0.95 SS G_CDS: 0.04 Total: -0.91 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.71 Total: 17.18 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.71 -7.00 -41.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981491279.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.594 kcal (2) G-P(sol) polarization free energy of solvation -34.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds