Wall clock time and date at job start Tue Mar 31 2020 14:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30373 * 125.96864 * 2 1 4 4 N 1.39914 * 109.02232 * 179.75043 * 3 2 1 5 5 C 1.46498 * 125.74334 * 180.24747 * 4 3 2 6 6 C 1.34418 * 108.51397 * 0.38863 * 4 3 2 7 7 F 1.35104 * 126.34255 * 179.88080 * 6 4 3 8 8 C 1.38501 * 107.31182 * 359.62408 * 6 4 3 9 9 C 1.47168 * 126.46002 * 180.26106 * 8 6 4 10 10 O 1.21631 * 119.99815 * 89.96929 * 9 8 6 11 11 N 1.34772 * 119.99990 * 269.97711 * 9 8 6 12 12 C 1.46503 * 120.00105 * 179.97438 * 11 9 8 13 13 H 1.08996 * 109.46900 * 324.99763 * 12 11 9 14 14 C 1.52998 * 109.46753 * 84.99918 * 12 11 9 15 15 C 1.53006 * 109.47073 * 180.02562 * 14 12 11 16 16 C 1.52999 * 109.46830 * 300.00050 * 15 14 12 17 17 C 1.52998 * 109.47334 * 60.00109 * 16 15 14 18 18 H 1.08996 * 109.47544 * 59.99504 * 17 16 15 19 19 N 1.46503 * 109.46878 * 179.97438 * 17 16 15 20 20 C 1.36935 * 119.99773 * 274.99435 * 19 17 16 21 21 H 1.07991 * 119.99913 * 0.02562 * 20 19 17 22 22 C 1.38813 * 119.99823 * 180.02562 * 20 19 17 23 23 N 1.31620 * 119.99873 * 180.02562 * 22 20 19 24 24 Si 1.86803 * 120.00100 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.47020 * 90.00062 * 24 22 20 26 26 H 1.48499 * 109.47379 * 210.00181 * 24 22 20 27 27 H 1.48503 * 109.46927 * 330.00082 * 24 22 20 28 28 C 1.52995 * 109.46942 * 204.99527 * 12 11 9 29 29 H 1.09002 * 109.46722 * 270.02423 * 1 2 3 30 30 H 1.09000 * 109.47283 * 30.02186 * 1 2 3 31 31 H 1.09004 * 109.47422 * 150.02763 * 1 2 3 32 32 H 1.08996 * 109.47460 * 270.16539 * 5 4 3 33 33 H 1.09000 * 109.46964 * 30.16832 * 5 4 3 34 34 H 1.09007 * 109.47511 * 150.16390 * 5 4 3 35 35 H 0.97003 * 120.00025 * 359.97438 * 11 9 8 36 36 H 1.09002 * 109.47149 * 299.99740 * 14 12 11 37 37 H 1.09002 * 109.47881 * 59.99978 * 14 12 11 38 38 H 1.08995 * 109.47382 * 179.97438 * 15 14 12 39 39 H 1.09003 * 109.46603 * 60.00064 * 15 14 12 40 40 H 1.08996 * 109.47210 * 299.99408 * 16 15 14 41 41 H 1.09001 * 109.46548 * 179.97438 * 16 15 14 42 42 H 0.97005 * 119.99718 * 94.99679 * 19 17 16 43 43 H 0.97000 * 119.99404 * 180.02562 * 23 22 20 44 44 H 1.09003 * 109.47845 * 299.99891 * 28 12 11 45 45 H 1.09003 * 109.47368 * 60.00410 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2727 1.0552 0.0000 4 7 3.6111 0.6473 0.0058 5 6 4.7763 1.5353 0.0127 6 6 3.6479 -0.6963 0.0007 7 9 4.7577 -1.4669 0.0015 8 6 2.3374 -1.1445 0.0004 9 6 1.8929 -2.5475 0.0010 10 8 1.7094 -3.1268 1.0546 11 7 1.6895 -3.1904 -1.1659 12 6 1.2475 -4.5871 -1.1653 13 1 1.7001 -5.1110 -0.3235 14 6 -0.2763 -4.6398 -1.0393 15 6 -0.7379 -6.0985 -1.0381 16 6 -0.3107 -6.7697 -2.3450 17 6 1.2131 -6.7170 -2.4710 18 1 1.6657 -7.2405 -1.6289 19 7 1.6221 -7.3602 -3.7221 20 6 1.7965 -8.7176 -3.7690 21 1 1.6321 -9.3140 -2.8838 22 6 2.1845 -9.3270 -4.9543 23 7 2.3516 -10.6318 -4.9995 24 14 2.4682 -8.2955 -6.4856 25 1 3.8874 -7.8613 -6.5341 26 1 2.1563 -9.1037 -7.6917 27 1 1.5861 -7.1013 -6.4484 28 6 1.6746 -5.2576 -2.4725 29 1 -0.3633 0.0004 1.0277 30 1 -0.3634 0.8898 -0.5142 31 1 -0.3634 -0.8902 -0.5134 32 1 5.0684 1.7596 -1.0131 33 1 4.5242 2.4614 0.5294 34 1 5.6032 1.0458 0.5272 35 1 1.8356 -2.7282 -2.0062 36 1 -0.5806 -4.1620 -0.1080 37 1 -0.7290 -4.1158 -1.8812 38 1 -1.8235 -6.1361 -0.9478 39 1 -0.2853 -6.6220 -0.1958 40 1 -0.7633 -6.2462 -3.1871 41 1 -0.6392 -7.8090 -2.3438 42 1 1.7694 -6.8245 -4.5173 43 1 2.6232 -11.0575 -5.8277 44 1 1.2220 -4.7338 -3.3145 45 1 2.7603 -5.2202 -2.5624 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981491279.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:34 Heat of formation + Delta-G solvation = -23.626680 kcal Electronic energy + Delta-G solvation = -27615.889687 eV Core-core repulsion = 23583.584442 eV Total energy + Delta-G solvation = -4032.305245 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.170 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.48679 -42.51461 -40.85285 -39.21016 -36.32181 -35.25738 -34.77003 -33.25337 -31.79210 -30.80114 -30.34829 -29.55501 -27.06717 -25.41465 -24.17764 -23.20057 -22.35204 -21.80797 -21.30411 -20.93309 -19.69272 -18.96954 -18.08071 -17.89175 -17.35921 -17.17719 -16.51059 -16.21460 -15.77455 -15.61264 -15.39442 -15.29044 -15.03572 -14.85361 -14.59657 -14.50281 -14.44998 -14.20177 -13.71798 -13.70148 -13.48885 -13.27321 -13.03371 -12.99873 -12.87340 -12.34377 -12.19582 -12.04617 -12.01135 -11.79224 -11.64977 -11.56267 -11.40539 -10.99101 -10.89690 -10.44265 -10.09654 -9.90744 -9.28988 -7.99818 -5.33367 0.19385 0.85284 1.11481 1.39076 1.39988 1.43595 1.50893 2.16812 2.51010 2.72535 3.26316 3.31235 3.47633 3.72335 3.83577 3.87601 4.04354 4.09827 4.20719 4.22373 4.28696 4.31190 4.41302 4.53516 4.57226 4.58830 4.67581 4.73401 4.77076 4.78840 4.88942 5.00222 5.14423 5.19334 5.23853 5.31833 5.38923 5.44532 5.52829 5.58941 5.64626 5.80687 6.22988 6.24292 6.48901 7.10779 7.15330 7.86322 8.06763 9.22021 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.016768 B = 0.002857 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.483472 B = 9799.552136 C =10688.755108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.133 3.867 3 N -0.282 5.282 4 N -0.368 5.368 5 C 0.080 3.920 6 C 0.288 3.712 7 F -0.090 7.090 8 C -0.310 4.310 9 C 0.603 3.397 10 O -0.569 6.569 11 N -0.698 5.698 12 C 0.156 3.844 13 H 0.067 0.933 14 C -0.115 4.115 15 C -0.107 4.107 16 C -0.128 4.128 17 C 0.180 3.820 18 H 0.035 0.965 19 N -0.750 5.750 20 C -0.227 4.227 21 H 0.052 0.948 22 C -0.069 4.069 23 N -0.987 5.987 24 Si 0.958 3.042 25 H -0.279 1.279 26 H -0.299 1.299 27 H -0.246 1.246 28 C -0.120 4.120 29 H 0.092 0.908 30 H 0.100 0.900 31 H 0.088 0.912 32 H 0.102 0.898 33 H 0.115 0.885 34 H 0.106 0.894 35 H 0.414 0.586 36 H 0.065 0.935 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.052 0.948 40 H 0.065 0.935 41 H 0.036 0.964 42 H 0.367 0.633 43 H 0.257 0.743 44 H 0.087 0.913 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.039 30.972 8.797 32.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.033 4.033 3 N -0.105 5.105 4 N -0.153 5.153 5 C -0.058 4.058 6 C 0.139 3.861 7 F -0.069 7.069 8 C -0.326 4.326 9 C 0.388 3.612 10 O -0.448 6.448 11 N -0.349 5.349 12 C 0.051 3.949 13 H 0.085 0.915 14 C -0.154 4.154 15 C -0.146 4.146 16 C -0.168 4.168 17 C 0.072 3.928 18 H 0.053 0.947 19 N -0.393 5.393 20 C -0.358 4.358 21 H 0.070 0.930 22 C -0.260 4.260 23 N -0.638 5.638 24 Si 0.785 3.215 25 H -0.206 1.206 26 H -0.226 1.226 27 H -0.170 1.170 28 C -0.159 4.159 29 H 0.111 0.889 30 H 0.119 0.881 31 H 0.107 0.893 32 H 0.120 0.880 33 H 0.134 0.866 34 H 0.124 0.876 35 H 0.250 0.750 36 H 0.084 0.916 37 H 0.102 0.898 38 H 0.097 0.903 39 H 0.071 0.929 40 H 0.083 0.917 41 H 0.055 0.945 42 H 0.200 0.800 43 H 0.065 0.935 44 H 0.106 0.894 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.915 31.687 9.615 33.126 hybrid contribution 1.061 -1.261 -1.251 2.069 sum 0.146 30.426 8.363 31.555 Atomic orbital electron populations 1.20464 0.83299 1.05238 1.04765 1.22592 0.98361 0.87148 0.95246 1.77296 0.84658 1.21351 1.27219 1.49035 1.07992 1.02386 1.55846 1.22503 0.82587 0.94694 1.06057 1.17876 0.83146 0.82679 1.02401 1.91674 1.49738 1.71757 1.93780 1.19678 0.91144 0.95183 1.26622 1.17184 0.76040 0.84357 0.83606 1.90797 1.52841 1.68354 1.32763 1.45966 1.67438 1.12961 1.08497 1.20834 0.95489 0.80699 0.97903 0.91457 1.21823 0.93812 0.96916 1.02816 1.21415 1.01365 0.95073 0.96771 1.22083 0.97162 0.99647 0.97928 1.20290 0.93399 0.91517 0.87621 0.94731 1.42736 1.83466 1.03683 1.09414 1.19001 1.36777 0.83726 0.96283 0.92964 1.25548 1.02446 0.96666 1.01301 1.69902 1.55980 1.10264 1.27668 0.85363 0.78526 0.78730 0.78861 1.20566 1.22583 1.17044 1.21950 1.01491 0.95108 0.97314 0.88923 0.88103 0.89328 0.87962 0.86629 0.87588 0.74971 0.91587 0.89823 0.90291 0.92872 0.91668 0.94467 0.79995 0.93455 0.89446 0.91564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.97 10.28 71.24 0.73 -0.23 16 2 C 0.13 2.45 7.26 43.55 0.32 2.77 16 3 N -0.28 -5.24 12.49 -46.64 -0.58 -5.83 16 4 N -0.37 -6.06 3.98 -368.85 -1.47 -7.53 16 5 C 0.08 0.55 11.43 127.77 1.46 2.01 16 6 C 0.29 5.89 8.70 84.36 0.73 6.62 16 7 F -0.09 -1.90 17.31 44.97 0.78 -1.12 16 8 C -0.31 -6.81 5.89 -20.09 -0.12 -6.93 16 9 C 0.60 15.43 7.32 86.59 0.63 16.06 16 10 O -0.57 -19.19 16.77 -4.13 -0.07 -19.26 16 11 N -0.70 -14.88 5.07 -446.07 -2.26 -17.15 16 12 C 0.16 3.88 2.45 44.99 0.11 3.99 16 13 H 0.07 2.05 7.58 -2.39 -0.02 2.03 16 14 C -0.12 -2.57 5.49 30.60 0.17 -2.41 16 15 C -0.11 -2.76 5.92 30.60 0.18 -2.58 16 16 C -0.13 -4.17 5.50 30.59 0.17 -4.00 16 17 C 0.18 6.57 2.77 45.01 0.12 6.70 16 18 H 0.03 1.41 8.08 -2.39 -0.02 1.40 16 19 N -0.75 -34.07 4.93 -322.85 -1.59 -35.66 16 20 C -0.23 -12.91 10.41 84.03 0.87 -12.04 16 21 H 0.05 3.31 8.06 -2.92 -0.02 3.28 16 22 C -0.07 -4.05 5.50 84.86 0.47 -3.58 16 23 N -0.99 -63.85 13.97 21.65 0.30 -63.54 16 24 Si 0.96 44.97 27.74 68.60 1.90 46.87 16 25 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 26 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 27 H -0.25 -10.17 6.52 99.48 0.65 -9.52 16 28 C -0.12 -3.28 4.86 30.61 0.15 -3.13 16 29 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.09 1.00 8.01 -2.38 -0.02 0.98 16 32 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.11 0.45 8.14 -2.38 -0.02 0.43 16 35 H 0.41 6.69 8.59 -92.71 -0.80 5.89 16 36 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.37 15.65 5.66 -92.70 -0.52 15.12 16 43 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 44 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 45 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -77.54 376.90 2.65 -74.90 By element: Atomic # 1 Polarization: 25.43 SS G_CDS: -0.36 Total: 25.07 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: 6.00 Total: 3.25 kcal Atomic # 7 Polarization: -124.10 SS G_CDS: -5.60 Total: -129.70 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: -0.07 Total: -19.26 kcal Atomic # 9 Polarization: -1.90 SS G_CDS: 0.78 Total: -1.12 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 1.90 Total: 46.87 kcal Total: -77.54 2.65 -74.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981491279.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.269 kcal (2) G-P(sol) polarization free energy of solvation -77.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds