Wall clock time and date at job start Tue Mar 31 2020 14:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30380 * 125.96178 * 2 1 4 4 N 1.39919 * 109.01612 * 180.02562 * 3 2 1 5 5 C 1.46503 * 125.73988 * 180.02562 * 4 3 2 6 6 C 1.34416 * 108.51640 * 0.02562 * 4 3 2 7 7 F 1.35096 * 126.34356 * 179.97438 * 6 4 3 8 8 C 1.38502 * 107.31149 * 359.73217 * 6 4 3 9 9 C 1.47165 * 126.45833 * 180.25931 * 8 6 4 10 10 O 1.21637 * 119.99820 * 270.18871 * 9 8 6 11 11 N 1.34772 * 120.00061 * 90.19117 * 9 8 6 12 12 C 1.46507 * 120.00014 * 180.02562 * 11 9 8 13 13 H 1.08998 * 109.49684 * 35.05961 * 12 11 9 14 14 C 1.53040 * 109.49561 * 274.99801 * 12 11 9 15 15 C 1.53038 * 109.54111 * 301.41095 * 14 12 11 16 16 C 1.53197 * 109.31047 * 298.63873 * 15 14 12 17 17 N 1.46925 * 108.77716 * 54.63379 * 16 15 14 18 18 C 1.36930 * 120.63162 * 126.41364 * 17 16 15 19 19 H 1.08004 * 120.00285 * 208.99977 * 18 17 16 20 20 C 1.38811 * 120.00390 * 28.99369 * 18 17 16 21 21 N 1.31619 * 119.99842 * 15.03509 * 20 18 17 22 22 Si 1.86801 * 120.00574 * 195.03564 * 20 18 17 23 23 H 1.48502 * 109.46866 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47108 * 119.99827 * 22 20 18 25 25 H 1.48497 * 109.47222 * 240.00218 * 22 20 18 26 26 C 1.46927 * 118.73902 * 306.38923 * 17 16 15 27 27 H 1.09004 * 109.58640 * 293.82598 * 26 17 16 28 28 C 1.52997 * 109.58771 * 173.39701 * 26 17 16 29 29 H 1.08995 * 109.47291 * 90.01787 * 1 2 3 30 30 H 1.08999 * 109.46799 * 330.01788 * 1 2 3 31 31 H 1.08996 * 109.46824 * 210.01895 * 1 2 3 32 32 H 1.08993 * 109.47247 * 90.03306 * 5 4 3 33 33 H 1.09001 * 109.46804 * 210.02966 * 5 4 3 34 34 H 1.08993 * 109.47001 * 330.02708 * 5 4 3 35 35 H 0.96992 * 120.00373 * 359.97438 * 11 9 8 36 36 H 1.09003 * 109.45824 * 61.43521 * 14 12 11 37 37 H 1.09005 * 109.45769 * 181.40658 * 14 12 11 38 38 H 1.09003 * 109.49576 * 58.58799 * 15 14 12 39 39 H 1.08993 * 109.50196 * 178.65004 * 15 14 12 40 40 H 1.09002 * 109.57979 * 174.42080 * 16 15 14 41 41 H 1.08992 * 109.58637 * 294.84050 * 16 15 14 42 42 H 0.96998 * 120.00498 * 179.97438 * 21 20 18 43 43 H 1.09007 * 109.47136 * 300.71070 * 28 26 17 44 44 H 1.08997 * 109.46845 * 60.71189 * 28 26 17 45 45 H 1.09000 * 109.46776 * 180.71074 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2727 1.0553 0.0000 4 7 3.6112 0.6475 -0.0006 5 6 4.7763 1.5356 -0.0002 6 6 3.6480 -0.6962 -0.0015 7 9 4.7577 -1.4666 -0.0028 8 6 2.3375 -1.1444 0.0046 9 6 1.8932 -2.5473 0.0114 10 8 1.7092 -3.1321 -1.0392 11 7 1.6900 -3.1842 1.1816 12 6 1.2482 -4.5811 1.1883 13 1 1.7011 -5.1099 0.3498 14 6 -0.2761 -4.6352 1.0630 15 6 -0.9128 -3.8643 2.2216 16 6 -0.5129 -4.5204 3.5470 17 7 0.9526 -4.6035 3.6104 18 6 1.6346 -4.0929 4.6824 19 1 2.6424 -3.7257 4.5562 20 6 1.0307 -4.0471 5.9314 21 7 -0.0596 -4.7477 6.1613 22 14 1.7652 -2.9912 7.2861 23 1 2.9815 -2.3082 6.7767 24 1 0.7706 -1.9761 7.7167 25 1 2.1279 -3.8503 8.4417 26 6 1.6724 -5.2453 2.5020 27 1 1.4251 -6.3064 2.4714 28 6 3.1796 -5.0724 2.7007 29 1 -0.3633 -0.0003 -1.0276 30 1 -0.3633 0.8902 0.5136 31 1 -0.3633 -0.8898 0.5141 32 1 5.0659 1.7546 1.0274 33 1 5.6045 1.0485 -0.5151 34 1 4.5255 2.4641 -0.5129 35 1 1.8370 -2.7181 2.0194 36 1 -0.5789 -4.1852 0.1175 37 1 -0.6063 -5.6736 1.0931 38 1 -0.5637 -2.8318 2.2069 39 1 -1.9976 -3.8829 2.1186 40 1 -0.8812 -3.9189 4.3781 41 1 -0.9385 -5.5223 3.6017 42 1 -0.4815 -4.7161 7.0342 43 1 3.4218 -4.0102 2.7370 44 1 3.4793 -5.5456 3.6358 45 1 3.7112 -5.5382 1.8710 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000994353480.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:21 Heat of formation + Delta-G solvation = 1.999564 kcal Electronic energy + Delta-G solvation = -29309.456840 eV Core-core repulsion = 25278.262832 eV Total energy + Delta-G solvation = -4031.194007 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.170 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.44912 -42.47405 -40.88713 -38.99255 -35.57101 -35.21029 -33.97248 -33.37313 -31.76734 -30.90152 -30.30662 -27.93251 -27.04336 -26.76823 -24.28873 -23.25551 -22.34069 -21.93267 -21.28121 -20.25679 -19.14201 -18.26887 -18.05056 -17.80178 -17.17535 -17.09435 -16.52850 -15.93640 -15.73611 -15.68421 -15.60850 -15.09201 -14.73298 -14.58982 -14.50478 -14.43451 -14.27009 -14.06599 -13.69221 -13.54623 -13.28134 -13.02937 -12.93897 -12.87985 -12.71380 -12.42330 -12.30858 -12.16352 -12.02360 -11.89746 -11.60589 -11.33380 -11.06406 -10.97160 -10.47869 -10.40896 -9.92561 -9.85534 -8.58048 -7.79271 -5.25041 0.23189 0.88927 1.14363 1.47539 1.50012 1.51519 1.58826 2.37497 2.54750 2.75056 3.30883 3.36864 3.62707 3.75348 3.91207 4.06698 4.13998 4.17238 4.23354 4.26922 4.30028 4.44835 4.57575 4.59520 4.69125 4.71914 4.76011 4.81908 4.88470 4.96816 5.05358 5.10796 5.18156 5.27076 5.31451 5.38964 5.46057 5.61089 5.62983 5.66516 5.77153 5.86418 6.24674 6.47117 6.63588 7.22006 7.25187 7.92852 8.45333 9.26972 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.012048 B = 0.004775 C = 0.004227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2323.485421 B = 5862.234227 C = 6621.788029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.129 3.871 3 N -0.282 5.282 4 N -0.368 5.368 5 C 0.081 3.919 6 C 0.288 3.712 7 F -0.088 7.088 8 C -0.310 4.310 9 C 0.601 3.399 10 O -0.574 6.574 11 N -0.683 5.683 12 C 0.141 3.859 13 H 0.081 0.919 14 C -0.115 4.115 15 C -0.125 4.125 16 C 0.178 3.822 17 N -0.596 5.596 18 C -0.243 4.243 19 H 0.076 0.924 20 C -0.047 4.047 21 N -0.934 5.934 22 Si 0.954 3.046 23 H -0.267 1.267 24 H -0.295 1.295 25 H -0.299 1.299 26 C 0.157 3.843 27 H 0.035 0.965 28 C -0.128 4.128 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.077 0.923 32 H 0.098 0.902 33 H 0.109 0.891 34 H 0.116 0.884 35 H 0.407 0.593 36 H 0.060 0.940 37 H 0.068 0.932 38 H 0.054 0.946 39 H 0.065 0.935 40 H 0.056 0.944 41 H -0.005 1.005 42 H 0.246 0.754 43 H 0.051 0.949 44 H 0.048 0.952 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.217 11.067 -12.645 17.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.037 4.037 3 N -0.105 5.105 4 N -0.153 5.153 5 C -0.058 4.058 6 C 0.140 3.860 7 F -0.067 7.067 8 C -0.326 4.326 9 C 0.386 3.614 10 O -0.454 6.454 11 N -0.332 5.332 12 C 0.034 3.966 13 H 0.099 0.901 14 C -0.153 4.153 15 C -0.165 4.165 16 C 0.052 3.948 17 N -0.320 5.320 18 C -0.373 4.373 19 H 0.093 0.907 20 C -0.242 4.242 21 N -0.580 5.580 22 Si 0.784 3.216 23 H -0.191 1.191 24 H -0.222 1.222 25 H -0.227 1.227 26 C 0.050 3.950 27 H 0.053 0.947 28 C -0.185 4.185 29 H 0.116 0.884 30 H 0.117 0.883 31 H 0.096 0.904 32 H 0.117 0.883 33 H 0.127 0.873 34 H 0.135 0.865 35 H 0.243 0.757 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.073 0.927 39 H 0.083 0.917 40 H 0.075 0.925 41 H 0.013 0.987 42 H 0.055 0.945 43 H 0.070 0.930 44 H 0.067 0.933 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.256 11.962 -13.216 18.891 hybrid contribution 0.611 -0.706 1.550 1.809 sum 6.868 11.256 -11.666 17.606 Atomic orbital electron populations 1.20418 0.83751 1.04746 1.04722 1.22523 0.98240 0.87448 0.95447 1.77256 0.84763 1.21170 1.27338 1.49012 1.07908 1.02358 1.55979 1.22504 0.82603 0.94741 1.05917 1.17791 0.83076 0.82681 1.02500 1.91655 1.49515 1.71724 1.93801 1.19766 0.91346 0.95471 1.26012 1.17156 0.76407 0.84337 0.83542 1.90735 1.53867 1.68070 1.32700 1.45967 1.65905 1.13303 1.08066 1.21430 0.94916 0.81646 0.98579 0.90094 1.21721 0.94623 1.00842 0.98123 1.21955 0.99419 0.99410 0.95671 1.20612 0.83252 0.96197 0.94703 1.44337 1.02000 1.66632 1.19017 1.19467 0.99495 1.31749 0.86628 0.90664 1.25687 0.99066 1.00493 0.98972 1.70167 1.23118 1.42724 1.22013 0.85400 0.77999 0.78433 0.79768 1.19085 1.22242 1.22699 1.20844 0.92784 0.94338 0.86996 0.94737 1.21697 0.94465 1.01420 1.00938 0.88396 0.88331 0.90369 0.88318 0.87256 0.86506 0.75664 0.92127 0.91319 0.92692 0.91670 0.92542 0.98707 0.94488 0.93001 0.93336 0.91776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.66 10.28 71.24 0.73 -0.92 16 2 C 0.13 3.46 7.26 43.55 0.32 3.78 16 3 N -0.28 -7.22 12.49 -46.63 -0.58 -7.81 16 4 N -0.37 -8.32 3.98 -368.87 -1.47 -9.79 16 5 C 0.08 0.95 11.43 127.77 1.46 2.41 16 6 C 0.29 7.78 8.70 84.36 0.73 8.51 16 7 F -0.09 -2.29 17.31 44.97 0.78 -1.51 16 8 C -0.31 -9.31 5.89 -20.09 -0.12 -9.42 16 9 C 0.60 20.24 7.31 86.59 0.63 20.88 16 10 O -0.57 -22.46 16.77 -4.15 -0.07 -22.53 16 11 N -0.68 -22.69 3.47 -445.67 -1.55 -24.23 16 12 C 0.14 4.80 2.32 45.07 0.10 4.90 16 13 H 0.08 2.76 7.58 -2.39 -0.02 2.74 16 14 C -0.11 -3.78 5.58 30.62 0.17 -3.61 16 15 C -0.13 -4.47 5.93 30.67 0.18 -4.29 16 16 C 0.18 8.04 5.29 86.36 0.46 8.49 16 17 N -0.60 -26.99 2.65 -675.23 -1.79 -28.78 16 18 C -0.24 -12.08 8.61 84.03 0.72 -11.36 16 19 H 0.08 3.62 6.20 -2.91 -0.02 3.60 16 20 C -0.05 -2.47 4.96 84.86 0.42 -2.05 16 21 N -0.93 -52.88 11.14 21.65 0.24 -52.64 16 22 Si 0.95 43.10 29.58 68.60 2.03 45.13 16 23 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 24 H -0.30 -13.49 7.11 99.48 0.71 -12.78 16 25 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 26 C 0.16 6.01 3.20 44.97 0.14 6.15 16 27 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 28 C -0.13 -4.49 7.72 71.98 0.56 -3.93 16 29 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.08 1.78 8.00 -2.39 -0.02 1.77 16 32 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.41 14.20 7.75 -92.71 -0.72 13.48 16 36 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 38 H 0.05 1.95 7.53 -2.39 -0.02 1.93 16 39 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 40 H 0.06 2.92 6.06 -2.39 -0.01 2.91 16 41 H -0.01 -0.25 8.14 -2.39 -0.02 -0.27 16 42 H 0.25 13.69 8.31 -92.71 -0.77 12.92 16 43 H 0.05 1.82 6.37 -2.38 -0.02 1.81 16 44 H 0.05 1.84 7.66 -2.39 -0.02 1.82 16 45 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -65.16 368.20 4.41 -60.75 By element: Atomic # 1 Polarization: 21.56 SS G_CDS: 0.30 Total: 21.86 kcal Atomic # 6 Polarization: 13.03 SS G_CDS: 6.52 Total: 19.54 kcal Atomic # 7 Polarization: -118.10 SS G_CDS: -5.14 Total: -123.25 kcal Atomic # 8 Polarization: -22.46 SS G_CDS: -0.07 Total: -22.53 kcal Atomic # 9 Polarization: -2.29 SS G_CDS: 0.78 Total: -1.51 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -65.16 4.41 -60.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994353480.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.751 kcal (2) G-P(sol) polarization free energy of solvation -65.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds