Wall clock time and date at job start Tue Mar 31 2020 14:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 110.30515 * 2 1 4 4 C 1.54392 * 110.34158 * 237.70916 * 2 1 3 5 5 N 1.48149 * 104.61404 * 264.99469 * 4 2 1 6 6 C 1.34781 * 127.83234 * 140.39384 * 5 4 2 7 7 O 1.21605 * 120.00219 * 353.40939 * 6 5 4 8 8 C 1.47430 * 119.99778 * 173.40467 * 6 5 4 9 9 C 1.41287 * 126.41543 * 351.54565 * 8 6 5 10 10 N 1.30454 * 108.02279 * 179.97438 * 9 8 6 11 11 N 1.39933 * 108.89323 * 0.02562 * 10 9 8 12 12 C 1.46507 * 125.74750 * 179.97438 * 11 10 9 13 13 C 1.53002 * 109.46968 * 304.97185 * 12 11 10 14 14 F 1.39896 * 109.46821 * 180.02562 * 13 12 11 15 15 C 1.34253 * 108.49457 * 359.74833 * 11 10 9 16 16 C 1.48141 * 104.32834 * 320.41582 * 5 4 2 17 17 C 1.54292 * 110.34186 * 122.17496 * 2 1 3 18 18 H 1.08997 * 110.34069 * 237.74123 * 17 2 1 19 19 N 1.46501 * 110.34233 * 359.97438 * 17 2 1 20 20 C 1.36933 * 120.00020 * 205.00691 * 19 17 2 21 21 H 1.08002 * 119.99943 * 359.97438 * 20 19 17 22 22 C 1.38819 * 119.99982 * 180.02562 * 20 19 17 23 23 N 1.31614 * 119.99940 * 179.97438 * 22 20 19 24 24 Si 1.86796 * 119.99725 * 359.97438 * 22 20 19 25 25 H 1.48502 * 109.47030 * 90.00591 * 24 22 20 26 26 H 1.48506 * 109.46808 * 210.00209 * 24 22 20 27 27 H 1.48495 * 109.47529 * 330.00072 * 24 22 20 28 28 H 1.09000 * 109.46639 * 297.82705 * 1 2 3 29 29 H 1.08998 * 109.46993 * 57.82581 * 1 2 3 30 30 H 1.09000 * 109.46919 * 177.82892 * 1 2 3 31 31 H 1.09006 * 109.47086 * 182.17705 * 3 2 1 32 32 H 1.09006 * 109.46825 * 302.16925 * 3 2 1 33 33 H 1.08992 * 109.47703 * 62.17424 * 3 2 1 34 34 H 1.08998 * 110.40682 * 23.78350 * 4 2 1 35 35 H 1.08996 * 110.40293 * 146.09553 * 4 2 1 36 36 H 1.08002 * 125.98960 * 0.02751 * 9 8 6 37 37 H 1.08995 * 109.47080 * 64.97838 * 12 11 10 38 38 H 1.09000 * 109.46814 * 184.97886 * 12 11 10 39 39 H 1.08995 * 109.47753 * 300.00240 * 13 12 11 40 40 H 1.09000 * 109.46781 * 60.00681 * 13 12 11 41 41 H 1.08002 * 126.29340 * 180.24144 * 15 11 10 42 42 H 1.09003 * 110.40633 * 280.79886 * 16 5 4 43 43 H 1.08998 * 110.40474 * 158.37208 * 16 5 4 44 44 H 0.97007 * 119.99932 * 24.99969 * 19 17 2 45 45 H 0.97002 * 120.00110 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0610 1.4349 0.0000 4 6 2.0667 -0.7734 -1.2238 5 7 2.3139 -2.1446 -0.7204 6 6 2.0769 -3.3120 -1.3510 7 8 1.4948 -3.3191 -2.4186 8 6 2.5236 -4.5803 -0.7464 9 6 3.3489 -4.7221 0.3915 10 7 3.5166 -5.9969 0.6121 11 7 2.8175 -6.7208 -0.3602 12 6 2.7552 -8.1811 -0.4600 13 6 4.1745 -8.7492 -0.5208 14 9 4.1150 -10.1436 -0.6166 15 6 2.2094 -5.8516 -1.1830 16 6 2.8802 -1.9416 0.6334 17 6 2.0664 -0.7704 1.2245 18 1 2.7096 -0.1270 1.8249 19 7 0.9554 -1.2784 2.0332 20 6 1.1371 -1.5256 3.3677 21 1 2.0994 -1.3464 3.8241 22 6 0.0845 -2.0075 4.1339 23 7 0.2592 -2.2456 5.4165 24 14 -1.5797 -2.3180 3.3444 25 1 -1.6352 -3.7134 2.8391 26 1 -2.6514 -2.1134 4.3519 27 1 -1.7756 -1.3743 2.2148 28 1 -0.3632 0.4797 0.9088 29 1 -0.3633 0.5472 -0.8698 30 1 -0.3633 -1.0269 -0.0389 31 1 3.1502 1.4193 -0.0390 32 1 1.6738 1.9655 -0.8700 33 1 1.7372 1.9422 0.9087 34 1 1.3223 -0.7891 -2.0198 35 1 2.9938 -0.3245 -1.5802 36 1 3.7669 -3.9164 0.9768 37 1 2.2398 -8.5833 0.4122 38 1 2.2130 -8.4607 -1.3633 39 1 4.6899 -8.3471 -1.3930 40 1 4.7167 -8.4696 0.3826 41 1 1.5902 -6.1010 -2.0320 42 1 3.9355 -1.6766 0.5682 43 1 2.7494 -2.8388 1.2385 44 1 0.0912 -1.4396 1.6233 45 1 -0.4764 -2.5820 5.9520 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000995982532.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:01 Heat of formation + Delta-G solvation = 27.370322 kcal Electronic energy + Delta-G solvation = -28348.655786 eV Core-core repulsion = 24318.561937 eV Total energy + Delta-G solvation = -4030.093849 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.170 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.10779 -41.45509 -39.77550 -37.75579 -34.54086 -34.04669 -33.20015 -31.11136 -30.51781 -29.43160 -28.23316 -26.92996 -26.25508 -24.12390 -23.82275 -22.40654 -21.28133 -20.80550 -19.39877 -18.81353 -17.61240 -17.47521 -16.84061 -16.32381 -15.96948 -15.67541 -15.58508 -15.21507 -14.68878 -14.61662 -14.32175 -14.04798 -13.74357 -13.48241 -13.25418 -13.15616 -12.89883 -12.63791 -12.44901 -12.09784 -11.98221 -11.90107 -11.62974 -11.41115 -11.31167 -11.23627 -10.98983 -10.91446 -10.54488 -10.49695 -10.25488 -10.05210 -9.66292 -9.62393 -9.57622 -9.07524 -8.77992 -8.33938 -7.30132 -5.83362 -3.18847 1.48309 2.08710 2.23821 3.25344 3.33146 3.37327 3.42324 3.63939 3.85425 4.17661 4.52565 4.54083 4.54983 4.65316 4.72214 4.87108 5.00164 5.01792 5.02969 5.14840 5.33032 5.38887 5.45162 5.47971 5.55267 5.63987 5.69809 5.81026 5.82860 5.92083 6.07515 6.09121 6.16287 6.22325 6.33358 6.39082 6.42057 6.56344 6.64349 6.65639 6.80855 7.47694 7.87748 7.93266 8.36110 8.47677 9.14511 9.87382 10.06752 11.34555 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.011028 B = 0.004241 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2538.401137 B = 6600.334812 C = 8155.531510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.090 4.090 3 C -0.131 4.131 4 C 0.117 3.883 5 N -0.610 5.610 6 C 0.616 3.384 7 O -0.564 6.564 8 C -0.280 4.280 9 C 0.086 3.914 10 N -0.296 5.296 11 N -0.368 5.368 12 C 0.103 3.897 13 C 0.054 3.946 14 F -0.208 7.208 15 C 0.126 3.874 16 C 0.058 3.942 17 C 0.180 3.820 18 H 0.078 0.922 19 N -0.740 5.740 20 C -0.249 4.249 21 H 0.093 0.907 22 C 0.012 3.988 23 N -0.930 5.930 24 Si 0.875 3.125 25 H -0.286 1.286 26 H -0.290 1.290 27 H -0.275 1.275 28 H 0.068 0.932 29 H 0.048 0.952 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.052 0.948 33 H 0.063 0.937 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.204 0.796 37 H 0.101 0.899 38 H 0.109 0.891 39 H 0.081 0.919 40 H 0.094 0.906 41 H 0.187 0.813 42 H 0.065 0.935 43 H 0.098 0.902 44 H 0.367 0.633 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.418 -4.501 -14.726 17.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.092 4.092 3 C -0.189 4.189 4 C -0.005 4.005 5 N -0.342 5.342 6 C 0.407 3.593 7 O -0.444 6.444 8 C -0.294 4.294 9 C -0.101 4.101 10 N -0.116 5.116 11 N -0.148 5.148 12 C -0.019 4.019 13 C -0.002 4.002 14 F -0.189 7.189 15 C -0.025 4.025 16 C -0.068 4.068 17 C 0.068 3.932 18 H 0.096 0.904 19 N -0.384 5.384 20 C -0.379 4.379 21 H 0.110 0.890 22 C -0.184 4.184 23 N -0.577 5.577 24 Si 0.705 3.295 25 H -0.212 1.212 26 H -0.217 1.217 27 H -0.201 1.201 28 H 0.087 0.913 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.097 0.903 35 H 0.087 0.913 36 H 0.220 0.780 37 H 0.119 0.881 38 H 0.128 0.872 39 H 0.100 0.900 40 H 0.112 0.888 41 H 0.204 0.796 42 H 0.083 0.917 43 H 0.116 0.884 44 H 0.203 0.797 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.707 -5.709 -14.325 17.239 hybrid contribution -1.742 0.150 -0.807 1.926 sum 5.965 -5.559 -15.132 17.189 Atomic orbital electron populations 1.21750 0.94025 1.01597 1.01654 1.21809 0.96553 0.95484 0.95386 1.21784 1.00495 0.94626 1.02012 1.22400 1.00381 0.81095 0.96664 1.48583 1.62815 1.04825 1.17942 1.16732 0.77906 0.81417 0.83273 1.90729 1.43670 1.86993 1.23049 1.20194 1.12380 0.93304 1.03535 1.24794 0.96057 0.94378 0.94895 1.77222 1.18370 1.05105 1.10857 1.48251 1.38498 1.05953 1.22072 1.22270 0.98738 0.75163 1.05745 1.22156 0.97020 0.75656 1.05384 1.92796 1.97452 1.30723 1.97964 1.22896 0.95609 0.88706 0.95261 1.23902 0.97125 1.03104 0.82634 1.21156 0.90108 0.91746 0.90162 0.90398 1.43061 1.09281 1.78811 1.07252 1.19084 0.98690 1.36903 0.83196 0.88971 1.24613 0.97420 1.01068 0.95346 1.69685 1.31818 1.50934 1.05235 0.86716 0.85806 0.78317 0.78636 1.21241 1.21655 1.20096 0.91321 0.93295 0.92855 0.92503 0.92892 0.91812 0.90332 0.91273 0.77971 0.88058 0.87238 0.90032 0.88821 0.79590 0.91666 0.88384 0.79715 0.93020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.12 7.09 37.16 0.26 -1.86 16 2 C -0.09 -1.31 1.03 -153.10 -0.16 -1.47 16 3 C -0.13 -1.54 8.26 37.16 0.31 -1.23 16 4 C 0.12 1.64 6.17 -2.41 -0.01 1.63 16 5 N -0.61 -9.62 3.32 -170.57 -0.57 -10.19 16 6 C 0.62 10.57 7.89 -12.52 -0.10 10.47 16 7 O -0.56 -10.92 17.16 5.27 0.09 -10.83 16 8 C -0.28 -4.29 6.05 -105.07 -0.64 -4.93 16 9 C 0.09 1.29 10.33 -16.98 -0.18 1.11 16 10 N -0.30 -4.34 12.33 30.86 0.38 -3.96 16 11 N -0.37 -4.44 3.65 -60.81 -0.22 -4.66 16 12 C 0.10 0.85 6.94 -4.04 -0.03 0.82 16 13 C 0.05 0.42 7.73 37.16 0.29 0.71 16 14 F -0.21 -1.95 17.36 2.25 0.04 -1.91 16 15 C 0.13 1.61 11.26 -16.56 -0.19 1.42 16 16 C 0.06 0.89 5.35 -2.41 -0.01 0.88 16 17 C 0.18 3.08 3.35 -66.53 -0.22 2.85 16 18 H 0.08 1.32 7.66 -51.93 -0.40 0.92 16 19 N -0.74 -16.22 4.37 -52.07 -0.23 -16.45 16 20 C -0.25 -6.55 10.44 -15.06 -0.16 -6.71 16 21 H 0.09 2.56 8.06 -52.49 -0.42 2.14 16 22 C 0.01 0.34 5.50 -17.43 -0.10 0.24 16 23 N -0.93 -28.33 13.97 55.49 0.78 -27.55 16 24 Si 0.87 21.91 27.73 -169.99 -4.71 17.20 16 25 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 26 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 27 H -0.27 -6.48 6.52 56.52 0.37 -6.11 16 28 H 0.07 1.19 7.76 -51.93 -0.40 0.79 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.97 6.98 -51.93 -0.36 0.60 16 31 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.08 1.16 7.56 -51.93 -0.39 0.77 16 35 H 0.07 0.82 7.83 -51.93 -0.41 0.41 16 36 H 0.20 2.80 5.14 -52.49 -0.27 2.53 16 37 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.11 0.60 8.06 -51.93 -0.42 0.19 16 39 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.19 1.87 8.06 -52.49 -0.42 1.45 16 42 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.10 1.67 4.88 -51.93 -0.25 1.42 16 44 H 0.37 8.27 2.97 -40.82 -0.12 8.15 16 45 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 366.38 15.07 5.52 5.52 Total: -1.00 -33.72 366.38 -6.27 -39.99 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: -6.42 Total: 8.90 kcal Atomic # 6 Polarization: 4.86 SS G_CDS: -0.93 Total: 3.93 kcal Atomic # 7 Polarization: -62.94 SS G_CDS: 0.14 Total: -62.80 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: 0.09 Total: -10.83 kcal Atomic # 9 Polarization: -1.95 SS G_CDS: 0.04 Total: -1.91 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.71 Total: 17.20 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.72 -6.27 -39.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995982532.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.363 kcal (2) G-P(sol) polarization free energy of solvation -33.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds