Wall clock time and date at job start Tue Mar 31 2020 14:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 110.30515 * 2 1 4 4 C 1.54392 * 110.34158 * 237.70916 * 2 1 3 5 5 N 1.48149 * 104.61404 * 264.99469 * 4 2 1 6 6 C 1.34781 * 127.83234 * 140.39384 * 5 4 2 7 7 O 1.21605 * 120.00219 * 353.40939 * 6 5 4 8 8 C 1.47430 * 119.99778 * 173.40467 * 6 5 4 9 9 C 1.41287 * 126.41543 * 351.54565 * 8 6 5 10 10 N 1.30454 * 108.02279 * 179.97438 * 9 8 6 11 11 N 1.39933 * 108.89323 * 0.02562 * 10 9 8 12 12 C 1.46507 * 125.74750 * 179.97438 * 11 10 9 13 13 C 1.53002 * 109.46968 * 304.97185 * 12 11 10 14 14 F 1.39896 * 109.46821 * 180.02562 * 13 12 11 15 15 C 1.34253 * 108.49457 * 359.74833 * 11 10 9 16 16 C 1.48141 * 104.32834 * 320.41582 * 5 4 2 17 17 C 1.54292 * 110.34186 * 122.17496 * 2 1 3 18 18 H 1.08997 * 110.34069 * 237.74123 * 17 2 1 19 19 N 1.46501 * 110.34233 * 359.97438 * 17 2 1 20 20 C 1.36933 * 120.00020 * 205.00691 * 19 17 2 21 21 H 1.08002 * 119.99943 * 359.97438 * 20 19 17 22 22 C 1.38819 * 119.99982 * 180.02562 * 20 19 17 23 23 N 1.31614 * 119.99940 * 179.97438 * 22 20 19 24 24 Si 1.86796 * 119.99725 * 359.97438 * 22 20 19 25 25 H 1.48502 * 109.47030 * 90.00591 * 24 22 20 26 26 H 1.48506 * 109.46808 * 210.00209 * 24 22 20 27 27 H 1.48495 * 109.47529 * 330.00072 * 24 22 20 28 28 H 1.09000 * 109.46639 * 297.82705 * 1 2 3 29 29 H 1.08998 * 109.46993 * 57.82581 * 1 2 3 30 30 H 1.09000 * 109.46919 * 177.82892 * 1 2 3 31 31 H 1.09006 * 109.47086 * 182.17705 * 3 2 1 32 32 H 1.09006 * 109.46825 * 302.16925 * 3 2 1 33 33 H 1.08992 * 109.47703 * 62.17424 * 3 2 1 34 34 H 1.08998 * 110.40682 * 23.78350 * 4 2 1 35 35 H 1.08996 * 110.40293 * 146.09553 * 4 2 1 36 36 H 1.08002 * 125.98960 * 0.02751 * 9 8 6 37 37 H 1.08995 * 109.47080 * 64.97838 * 12 11 10 38 38 H 1.09000 * 109.46814 * 184.97886 * 12 11 10 39 39 H 1.08995 * 109.47753 * 300.00240 * 13 12 11 40 40 H 1.09000 * 109.46781 * 60.00681 * 13 12 11 41 41 H 1.08002 * 126.29340 * 180.24144 * 15 11 10 42 42 H 1.09003 * 110.40633 * 280.79886 * 16 5 4 43 43 H 1.08998 * 110.40474 * 158.37208 * 16 5 4 44 44 H 0.97007 * 119.99932 * 24.99969 * 19 17 2 45 45 H 0.97002 * 120.00110 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0610 1.4349 0.0000 4 6 2.0667 -0.7734 -1.2238 5 7 2.3139 -2.1446 -0.7204 6 6 2.0769 -3.3120 -1.3510 7 8 1.4948 -3.3191 -2.4186 8 6 2.5236 -4.5803 -0.7464 9 6 3.3489 -4.7221 0.3915 10 7 3.5166 -5.9969 0.6121 11 7 2.8175 -6.7208 -0.3602 12 6 2.7552 -8.1811 -0.4600 13 6 4.1745 -8.7492 -0.5208 14 9 4.1150 -10.1436 -0.6166 15 6 2.2094 -5.8516 -1.1830 16 6 2.8802 -1.9416 0.6334 17 6 2.0664 -0.7704 1.2245 18 1 2.7096 -0.1270 1.8249 19 7 0.9554 -1.2784 2.0332 20 6 1.1371 -1.5256 3.3677 21 1 2.0994 -1.3464 3.8241 22 6 0.0845 -2.0075 4.1339 23 7 0.2592 -2.2456 5.4165 24 14 -1.5797 -2.3180 3.3444 25 1 -1.6352 -3.7134 2.8391 26 1 -2.6514 -2.1134 4.3519 27 1 -1.7756 -1.3743 2.2148 28 1 -0.3632 0.4797 0.9088 29 1 -0.3633 0.5472 -0.8698 30 1 -0.3633 -1.0269 -0.0389 31 1 3.1502 1.4193 -0.0390 32 1 1.6738 1.9655 -0.8700 33 1 1.7372 1.9422 0.9087 34 1 1.3223 -0.7891 -2.0198 35 1 2.9938 -0.3245 -1.5802 36 1 3.7669 -3.9164 0.9768 37 1 2.2398 -8.5833 0.4122 38 1 2.2130 -8.4607 -1.3633 39 1 4.6899 -8.3471 -1.3930 40 1 4.7167 -8.4696 0.3826 41 1 1.5902 -6.1010 -2.0320 42 1 3.9355 -1.6766 0.5682 43 1 2.7494 -2.8388 1.2385 44 1 0.0912 -1.4396 1.6233 45 1 -0.4764 -2.5820 5.9520 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000995982532.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:00 Heat of formation + Delta-G solvation = 5.170906 kcal Electronic energy + Delta-G solvation = -28349.618425 eV Core-core repulsion = 24318.561937 eV Total energy + Delta-G solvation = -4031.056488 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.170 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.80795 -42.50825 -41.01906 -39.07847 -35.84296 -35.41453 -34.45805 -33.02083 -31.56046 -30.36049 -29.66356 -28.17130 -27.32998 -25.61884 -24.79396 -23.76804 -22.54835 -21.82858 -20.64535 -20.21549 -19.32726 -18.49984 -17.62549 -17.33572 -17.12209 -16.83378 -16.63664 -16.31252 -16.23914 -15.90558 -15.57555 -15.16406 -14.88561 -14.84805 -14.67753 -14.15980 -14.08904 -13.88699 -13.81041 -13.39364 -13.33080 -13.06803 -12.80200 -12.70952 -12.66346 -12.46777 -12.26152 -12.15886 -11.92622 -11.81495 -11.80157 -11.51468 -11.36608 -11.00468 -10.89937 -10.66115 -9.93956 -9.64149 -9.14028 -8.00919 -5.30670 0.44670 1.08878 1.20316 1.31704 1.33885 1.39549 2.07041 2.42946 2.46027 3.10847 3.30667 3.46206 3.57663 3.59258 3.70279 3.78581 3.85025 3.92989 4.00451 4.12947 4.13235 4.22075 4.35236 4.43605 4.47433 4.55858 4.62310 4.74090 4.77276 4.81714 4.85694 4.93135 5.00909 5.03131 5.13853 5.28248 5.35541 5.38793 5.39387 5.60023 5.74815 5.83246 6.24793 6.41752 6.62785 7.10841 7.21526 7.89071 8.05584 9.20510 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.011028 B = 0.004241 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2538.401137 B = 6600.334812 C = 8155.531510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.082 4.082 3 C -0.126 4.126 4 C 0.118 3.882 5 N -0.612 5.612 6 C 0.611 3.389 7 O -0.593 6.593 8 C -0.311 4.311 9 C 0.080 3.920 10 N -0.319 5.319 11 N -0.360 5.360 12 C 0.096 3.904 13 C 0.060 3.940 14 F -0.215 7.215 15 C 0.138 3.862 16 C 0.066 3.934 17 C 0.167 3.833 18 H 0.083 0.917 19 N -0.745 5.745 20 C -0.215 4.215 21 H 0.073 0.927 22 C -0.054 4.054 23 N -0.979 5.979 24 Si 0.928 3.072 25 H -0.293 1.293 26 H -0.297 1.297 27 H -0.255 1.255 28 H 0.050 0.950 29 H 0.074 0.926 30 H 0.026 0.974 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.052 0.948 34 H 0.072 0.928 35 H 0.100 0.900 36 H 0.206 0.794 37 H 0.103 0.897 38 H 0.144 0.856 39 H 0.094 0.906 40 H 0.084 0.916 41 H 0.215 0.785 42 H 0.101 0.899 43 H 0.079 0.921 44 H 0.364 0.636 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.975 -4.160 -17.277 19.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.084 4.084 3 C -0.184 4.184 4 C -0.004 4.004 5 N -0.343 5.343 6 C 0.403 3.597 7 O -0.476 6.476 8 C -0.325 4.325 9 C -0.107 4.107 10 N -0.139 5.139 11 N -0.138 5.138 12 C -0.025 4.025 13 C 0.004 3.996 14 F -0.196 7.196 15 C -0.014 4.014 16 C -0.059 4.059 17 C 0.058 3.942 18 H 0.101 0.899 19 N -0.389 5.389 20 C -0.346 4.346 21 H 0.091 0.909 22 C -0.245 4.245 23 N -0.631 5.631 24 Si 0.758 3.242 25 H -0.221 1.221 26 H -0.224 1.224 27 H -0.180 1.180 28 H 0.069 0.931 29 H 0.092 0.908 30 H 0.045 0.955 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.072 0.928 34 H 0.091 0.909 35 H 0.118 0.882 36 H 0.222 0.778 37 H 0.121 0.879 38 H 0.161 0.839 39 H 0.112 0.888 40 H 0.102 0.898 41 H 0.232 0.768 42 H 0.119 0.881 43 H 0.097 0.903 44 H 0.200 0.800 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 8.305 -5.343 -16.920 19.591 hybrid contribution -1.819 0.020 -0.068 1.820 sum 6.486 -5.323 -16.988 18.947 Atomic orbital electron populations 1.21731 0.95263 1.00023 1.01937 1.21770 0.95518 0.97055 0.94053 1.21758 1.01798 0.92338 1.02471 1.22548 1.01686 0.80155 0.95991 1.48648 1.62446 1.05337 1.17865 1.16991 0.77515 0.82154 0.83040 1.90699 1.45202 1.87454 1.24281 1.20268 1.14048 0.93703 1.04527 1.24858 0.96223 0.94695 0.94966 1.77164 1.19411 1.05236 1.12096 1.48497 1.37231 1.07168 1.20928 1.22613 0.99388 0.72899 1.07563 1.22093 0.96844 0.75121 1.05533 1.92785 1.97467 1.31366 1.97988 1.23330 0.94687 0.88021 0.95323 1.23749 0.98612 1.01288 0.82202 1.21495 0.89116 0.92703 0.90908 0.89906 1.43128 1.10720 1.79021 1.06034 1.19120 0.97254 1.33354 0.84863 0.90932 1.25203 1.00671 1.02857 0.95802 1.69828 1.32530 1.53901 1.06794 0.85819 0.82206 0.77999 0.78149 1.22068 1.22379 1.17977 0.93071 0.90756 0.95463 0.90469 0.90855 0.92843 0.90948 0.88197 0.77789 0.87912 0.83853 0.88803 0.89792 0.76825 0.88131 0.90281 0.79994 0.93668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.99 7.09 71.98 0.51 -3.48 16 2 C -0.08 -2.17 1.03 -51.27 -0.05 -2.22 16 3 C -0.13 -2.50 8.26 71.98 0.59 -1.91 16 4 C 0.12 2.97 6.17 86.54 0.53 3.50 16 5 N -0.61 -18.20 3.32 -811.82 -2.69 -20.89 16 6 C 0.61 20.26 7.89 86.66 0.68 20.94 16 7 O -0.59 -22.31 17.16 -4.05 -0.07 -22.38 16 8 C -0.31 -9.23 6.05 -20.15 -0.12 -9.35 16 9 C 0.08 2.33 10.33 85.65 0.88 3.22 16 10 N -0.32 -9.13 12.33 -56.27 -0.69 -9.83 16 11 N -0.36 -8.05 3.65 -346.29 -1.26 -9.31 16 12 C 0.10 1.36 6.94 86.38 0.60 1.96 16 13 C 0.06 0.84 7.73 71.98 0.56 1.40 16 14 F -0.21 -3.66 17.36 44.97 0.78 -2.88 16 15 C 0.14 3.28 11.26 84.28 0.95 4.23 16 16 C 0.07 1.92 5.35 86.53 0.46 2.39 16 17 C 0.17 5.44 3.35 45.90 0.15 5.59 16 18 H 0.08 2.64 7.66 -2.39 -0.02 2.62 16 19 N -0.75 -32.25 4.37 -318.64 -1.39 -33.64 16 20 C -0.21 -11.40 10.44 84.04 0.88 -10.52 16 21 H 0.07 4.10 8.06 -2.91 -0.02 4.08 16 22 C -0.05 -3.08 5.50 84.86 0.47 -2.61 16 23 N -0.98 -61.45 13.97 21.65 0.30 -61.15 16 24 Si 0.93 46.01 27.73 68.60 1.90 47.92 16 25 H -0.29 -14.76 7.11 99.48 0.71 -14.06 16 26 H -0.30 -14.92 7.11 99.48 0.71 -14.22 16 27 H -0.25 -11.58 6.52 99.48 0.65 -10.93 16 28 H 0.05 1.71 7.76 -2.39 -0.02 1.69 16 29 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.03 0.95 6.98 -2.39 -0.02 0.93 16 31 H 0.08 1.24 8.10 -2.38 -0.02 1.22 16 32 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 33 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.07 1.95 7.56 -2.39 -0.02 1.93 16 35 H 0.10 1.93 7.83 -2.39 -0.02 1.92 16 36 H 0.21 5.61 5.14 -2.91 -0.01 5.59 16 37 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.14 1.09 8.06 -2.39 -0.02 1.07 16 39 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.22 3.70 8.06 -2.91 -0.02 3.68 16 42 H 0.10 2.23 8.14 -2.39 -0.02 2.22 16 43 H 0.08 2.66 4.88 -2.39 -0.01 2.65 16 44 H 0.36 16.21 2.97 -92.70 -0.28 15.93 16 45 H 0.25 15.46 8.31 -92.71 -0.77 14.68 16 Total: -1.00 -74.62 366.38 4.65 -69.97 By element: Atomic # 1 Polarization: 28.39 SS G_CDS: 0.68 Total: 29.07 kcal Atomic # 6 Polarization: 6.03 SS G_CDS: 7.10 Total: 13.13 kcal Atomic # 7 Polarization: -129.08 SS G_CDS: -5.74 Total: -134.82 kcal Atomic # 8 Polarization: -22.31 SS G_CDS: -0.07 Total: -22.38 kcal Atomic # 9 Polarization: -3.66 SS G_CDS: 0.78 Total: -2.88 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 1.90 Total: 47.92 kcal Total: -74.62 4.65 -69.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995982532.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.139 kcal (2) G-P(sol) polarization free energy of solvation -74.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds