Wall clock time and date at job start Tue Mar 31 2020 14:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30379 * 125.95914 * 2 1 4 4 N 1.39923 * 109.01369 * 180.28390 * 3 2 1 5 5 C 1.46497 * 125.74141 * 179.73505 * 4 3 2 6 6 C 1.34408 * 108.51648 * 359.71296 * 4 3 2 7 7 F 1.35100 * 126.34612 * 179.97438 * 6 4 3 8 8 C 1.38504 * 107.31258 * 0.02562 * 6 4 3 9 9 C 1.47168 * 126.45807 * 180.02562 * 8 6 4 10 10 O 1.21638 * 120.00351 * 90.01808 * 9 8 6 11 11 N 1.34777 * 119.99863 * 270.02042 * 9 8 6 12 12 C 1.48150 * 127.83738 * 0.02562 * 11 9 8 13 13 C 1.54383 * 104.61731 * 140.43752 * 12 11 9 14 14 H 1.08997 * 110.34173 * 264.99537 * 13 12 11 15 15 N 1.46500 * 110.34642 * 142.73910 * 13 12 11 16 16 C 1.36934 * 120.00269 * 89.45879 * 15 13 12 17 17 H 1.08001 * 119.99969 * 0.02562 * 16 15 13 18 18 C 1.38811 * 120.00003 * 180.02562 * 16 15 13 19 19 N 1.31614 * 120.00172 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99699 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47260 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.46944 * 120.00468 * 20 18 16 23 23 H 1.48501 * 109.46853 * 239.99795 * 20 18 16 24 24 C 1.54286 * 104.95971 * 23.86565 * 13 12 11 25 25 C 1.53002 * 110.34382 * 118.87294 * 24 13 12 26 26 C 1.53004 * 110.34436 * 241.12970 * 24 13 12 27 27 C 1.48141 * 127.83881 * 180.02562 * 11 9 8 28 28 H 1.08997 * 109.47028 * 270.18122 * 1 2 3 29 29 H 1.09005 * 109.47555 * 30.19015 * 1 2 3 30 30 H 1.09008 * 109.46832 * 150.18495 * 1 2 3 31 31 H 1.08997 * 109.47028 * 269.98181 * 5 4 3 32 32 H 1.09003 * 109.47198 * 29.97229 * 5 4 3 33 33 H 1.08997 * 109.47339 * 149.97442 * 5 4 3 34 34 H 1.09001 * 110.40703 * 21.65319 * 12 11 9 35 35 H 1.08996 * 110.40508 * 259.22033 * 12 11 9 36 36 H 0.97006 * 120.00033 * 269.46548 * 15 13 12 37 37 H 0.97000 * 119.99901 * 179.97438 * 19 18 16 38 38 H 1.09004 * 109.46776 * 59.99639 * 25 24 13 39 39 H 1.08991 * 109.47640 * 179.97438 * 25 24 13 40 40 H 1.09000 * 109.47101 * 300.00109 * 25 24 13 41 41 H 1.08995 * 109.46926 * 59.99962 * 26 24 13 42 42 H 1.08996 * 109.47237 * 180.02562 * 26 24 13 43 43 H 1.09000 * 109.46849 * 300.00069 * 26 24 13 44 44 H 1.09006 * 110.41042 * 100.78053 * 27 11 9 45 45 H 1.09007 * 110.40752 * 338.35011 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2726 1.0553 0.0000 4 7 3.6111 0.6475 -0.0066 5 6 4.7762 1.5356 -0.0141 6 6 3.6480 -0.6961 -0.0042 7 9 4.7577 -1.4666 -0.0093 8 6 2.3375 -1.1443 0.0032 9 6 1.8932 -2.5473 0.0086 10 8 1.7143 -3.1247 1.0642 11 7 1.6844 -3.1925 -1.1562 12 6 1.8474 -2.6632 -2.5302 13 6 2.4730 -3.8293 -3.3253 14 1 3.5579 -3.7293 -3.3542 15 7 1.9278 -3.8693 -4.6846 16 6 2.5353 -3.1613 -5.6870 17 1 3.4164 -2.5737 -5.4757 18 6 2.0184 -3.1987 -6.9747 19 7 0.9443 -3.9144 -7.2322 20 14 2.8475 -2.2334 -8.3423 21 1 4.0275 -1.5158 -7.7966 22 1 3.2856 -3.1664 -9.4114 23 1 1.8880 -1.2502 -8.9061 24 6 2.0720 -5.1009 -2.5490 25 6 1.2262 -6.0195 -3.4333 26 6 3.3186 -5.8373 -2.0543 27 6 1.2399 -4.5919 -1.3529 28 1 -0.3633 0.0033 1.0276 29 1 -0.3634 0.8883 -0.5168 30 1 -0.3633 -0.8917 -0.5110 31 1 5.0598 1.7540 -1.0436 32 1 4.5283 2.4646 0.4992 33 1 5.6073 1.0490 0.4964 34 1 2.5159 -1.8022 -2.5290 35 1 0.8789 -2.3928 -2.9507 36 1 1.1365 -4.3972 -4.8745 37 1 0.5829 -3.9402 -8.1320 38 1 1.8014 -6.3068 -4.3136 39 1 0.9516 -6.9124 -2.8719 40 1 0.3236 -5.4937 -3.7448 41 1 3.8891 -5.1833 -1.3949 42 1 3.0194 -6.7324 -1.5090 43 1 3.9353 -6.1211 -2.9071 44 1 0.1763 -4.6233 -1.5894 45 1 1.4500 -5.1861 -0.4634 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996565715.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:32 Heat of formation + Delta-G solvation = 24.992159 kcal Electronic energy + Delta-G solvation = -28901.287347 eV Core-core repulsion = 24871.090374 eV Total energy + Delta-G solvation = -4030.196974 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.170 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.39057 -41.47389 -39.72123 -37.78233 -34.34281 -34.08339 -33.09630 -30.82276 -30.55271 -29.64635 -27.62748 -26.96921 -26.71256 -25.50759 -23.87148 -22.42800 -21.52625 -20.73482 -19.36760 -18.51038 -17.65161 -17.33826 -17.02377 -16.45913 -16.19242 -15.60240 -15.30941 -14.83034 -14.53148 -14.06383 -14.03760 -13.80586 -13.72475 -13.67316 -13.39869 -13.19204 -12.94155 -12.57058 -12.54089 -12.48661 -12.26432 -11.91613 -11.70787 -11.55918 -11.20941 -11.02536 -10.95539 -10.94505 -10.55641 -10.47116 -10.17994 -9.90475 -9.81109 -9.64361 -9.46897 -9.04817 -8.78709 -8.38700 -7.06343 -5.85832 -3.15168 1.26243 1.77776 2.17290 2.67619 3.29721 3.37608 3.44004 3.45635 3.71206 4.18595 4.51643 4.61420 4.76917 4.80982 4.93433 5.07901 5.10762 5.11548 5.16253 5.25436 5.48541 5.49980 5.62092 5.66362 5.70744 5.71195 5.83706 5.90570 6.01422 6.07113 6.19224 6.21630 6.29585 6.33632 6.36044 6.46348 6.53447 6.55059 6.63948 6.85358 6.96575 7.23901 7.63603 7.82907 8.32116 8.36245 9.45151 9.99993 10.35354 11.36447 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.011013 B = 0.004551 C = 0.003800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2541.934496 B = 6150.424993 C = 7366.618463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.134 3.866 3 N -0.272 5.272 4 N -0.375 5.375 5 C 0.093 3.907 6 C 0.293 3.707 7 F -0.088 7.088 8 C -0.277 4.277 9 C 0.616 3.384 10 O -0.544 6.544 11 N -0.607 5.607 12 C 0.081 3.919 13 C 0.176 3.824 14 H 0.062 0.938 15 N -0.714 5.714 16 C -0.245 4.245 17 H 0.070 0.930 18 C -0.008 4.008 19 N -0.929 5.929 20 Si 0.905 3.095 21 H -0.281 1.281 22 H -0.291 1.291 23 H -0.291 1.291 24 C -0.088 4.088 25 C -0.129 4.129 26 C -0.130 4.130 27 C 0.117 3.883 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.099 0.901 33 H 0.090 0.910 34 H 0.063 0.937 35 H 0.078 0.922 36 H 0.391 0.609 37 H 0.256 0.744 38 H 0.072 0.928 39 H 0.045 0.955 40 H 0.061 0.939 41 H 0.050 0.950 42 H 0.051 0.949 43 H 0.059 0.941 44 H 0.072 0.928 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.480 5.798 14.503 16.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.033 4.033 3 N -0.095 5.095 4 N -0.160 5.160 5 C -0.047 4.047 6 C 0.146 3.854 7 F -0.067 7.067 8 C -0.293 4.293 9 C 0.402 3.598 10 O -0.422 6.422 11 N -0.339 5.339 12 C -0.045 4.045 13 C 0.063 3.937 14 H 0.080 0.920 15 N -0.357 5.357 16 C -0.376 4.376 17 H 0.088 0.912 18 C -0.204 4.204 19 N -0.577 5.577 20 Si 0.736 3.264 21 H -0.206 1.206 22 H -0.218 1.218 23 H -0.218 1.218 24 C -0.090 4.090 25 C -0.187 4.187 26 C -0.188 4.188 27 C -0.005 4.005 28 H 0.104 0.896 29 H 0.102 0.898 30 H 0.102 0.898 31 H 0.103 0.897 32 H 0.118 0.882 33 H 0.109 0.891 34 H 0.082 0.918 35 H 0.096 0.904 36 H 0.229 0.771 37 H 0.066 0.934 38 H 0.091 0.909 39 H 0.064 0.936 40 H 0.080 0.920 41 H 0.069 0.931 42 H 0.070 0.930 43 H 0.078 0.922 44 H 0.090 0.910 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.726 6.963 15.005 16.956 hybrid contribution 0.727 -0.394 -1.011 1.307 sum 4.454 6.569 13.993 16.087 Atomic orbital electron populations 1.20317 0.85204 1.04297 1.03780 1.22169 0.97201 0.87965 0.95930 1.77291 0.84096 1.21135 1.26967 1.48619 1.07284 1.02547 1.57554 1.22056 0.83623 0.94553 1.04477 1.17744 0.83352 0.81823 1.02530 1.91659 1.49680 1.71581 1.93800 1.19599 0.90327 0.95542 1.23825 1.16552 0.77144 0.83712 0.82377 1.90771 1.53094 1.67801 1.30515 1.48956 1.65117 1.13795 1.06030 1.23628 1.01823 0.99450 0.79605 1.21109 0.96801 0.90086 0.85663 0.91992 1.42707 1.33661 1.57342 1.02035 1.19288 1.08080 1.21901 0.88316 0.91224 1.24715 0.97917 1.00364 0.97440 1.69654 1.23519 1.44150 1.20403 0.86162 0.78524 0.79290 0.82453 1.20616 1.21799 1.21829 1.21763 0.95829 0.96693 0.94724 1.21675 0.99934 0.97617 0.99470 1.21788 0.96894 0.99338 1.00767 1.22471 0.98230 0.81601 0.98234 0.89589 0.89806 0.89827 0.89669 0.88218 0.89112 0.91810 0.90401 0.77103 0.93432 0.90880 0.93608 0.91968 0.93116 0.92987 0.92161 0.90990 0.90362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.86 10.28 36.01 0.37 -0.49 16 2 C 0.13 1.89 7.26 -82.01 -0.60 1.29 16 3 N -0.27 -3.78 12.49 33.91 0.42 -3.35 16 4 N -0.38 -4.74 3.98 -67.94 -0.27 -5.01 16 5 C 0.09 0.71 11.43 59.85 0.68 1.39 16 6 C 0.29 4.25 8.70 -16.33 -0.14 4.11 16 7 F -0.09 -1.25 17.31 2.25 0.04 -1.21 16 8 C -0.28 -4.35 4.79 -104.97 -0.50 -4.85 16 9 C 0.62 10.65 7.45 -12.63 -0.09 10.55 16 10 O -0.54 -10.76 17.37 5.24 0.09 -10.67 16 11 N -0.61 -10.00 3.32 -170.69 -0.57 -10.57 16 12 C 0.08 1.42 6.62 -2.41 -0.02 1.40 16 13 C 0.18 3.31 3.35 -66.53 -0.22 3.09 16 14 H 0.06 1.22 7.66 -51.93 -0.40 0.83 16 15 N -0.71 -16.44 4.57 -52.07 -0.24 -16.67 16 16 C -0.24 -6.38 9.96 -15.06 -0.15 -6.53 16 17 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 18 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 19 N -0.93 -26.58 13.06 55.49 0.72 -25.86 16 20 Si 0.90 21.55 29.55 -169.99 -5.02 16.53 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 24 C -0.09 -1.41 1.03 -153.12 -0.16 -1.57 16 25 C -0.13 -2.07 7.12 37.16 0.26 -1.80 16 26 C -0.13 -1.90 8.24 37.16 0.31 -1.59 16 27 C 0.12 1.80 6.14 -2.43 -0.01 1.79 16 28 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.08 0.95 8.01 -51.92 -0.42 0.54 16 31 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 1.14 7.44 -51.93 -0.39 0.75 16 35 H 0.08 1.44 8.06 -51.93 -0.42 1.03 16 36 H 0.39 9.40 5.11 -40.82 -0.21 9.19 16 37 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 38 H 0.07 1.33 7.76 -51.93 -0.40 0.93 16 39 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.06 1.06 6.93 -51.93 -0.36 0.70 16 41 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.07 1.05 7.83 -51.93 -0.41 0.65 16 45 H 0.08 1.19 7.60 -51.93 -0.39 0.79 16 LS Contribution 376.64 15.07 5.68 5.68 Total: -1.00 -31.73 376.64 -6.25 -37.99 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -6.74 Total: 6.66 kcal Atomic # 6 Polarization: 6.85 SS G_CDS: -0.37 Total: 6.49 kcal Atomic # 7 Polarization: -61.54 SS G_CDS: 0.07 Total: -61.46 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.09 Total: -10.67 kcal Atomic # 9 Polarization: -1.25 SS G_CDS: 0.04 Total: -1.21 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.73 -6.25 -37.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996565715.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.978 kcal (2) G-P(sol) polarization free energy of solvation -31.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds