Wall clock time and date at job start Tue Mar 31 2020 14:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30374 * 125.96255 * 2 1 4 4 N 1.39920 * 109.01645 * 180.28307 * 3 2 1 5 5 C 1.46508 * 125.73942 * 179.74447 * 4 3 2 6 6 C 1.34405 * 108.51777 * 359.70885 * 4 3 2 7 7 F 1.35096 * 126.34715 * 179.97438 * 6 4 3 8 8 C 1.38505 * 107.30896 * 0.02562 * 6 4 3 9 9 C 1.47170 * 126.45442 * 179.97438 * 8 6 4 10 10 O 1.21637 * 120.00327 * 90.02887 * 9 8 6 11 11 N 1.34775 * 120.00206 * 270.02385 * 9 8 6 12 12 C 1.46500 * 120.00014 * 0.02562 * 11 9 8 13 13 C 1.46507 * 120.00359 * 180.02562 * 11 9 8 14 14 C 1.53036 * 109.45897 * 240.00340 * 13 11 9 15 15 C 1.53191 * 109.31166 * 178.61271 * 14 13 11 16 16 N 1.46926 * 108.89452 * 54.56289 * 15 14 13 17 17 C 1.36934 * 120.63630 * 126.46229 * 16 15 14 18 18 H 1.08000 * 119.99464 * 331.92669 * 17 16 15 19 19 C 1.38810 * 120.00385 * 151.92945 * 17 16 15 20 20 N 1.31619 * 119.99689 * 343.17004 * 19 17 16 21 21 Si 1.86795 * 119.99988 * 163.17171 * 19 17 16 22 22 H 1.48503 * 109.47611 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47271 * 120.00121 * 21 19 17 24 24 H 1.48496 * 109.47355 * 239.99904 * 21 19 17 25 25 C 1.46973 * 118.71425 * 306.64410 * 16 15 14 26 26 C 1.53043 * 109.45897 * 119.93020 * 13 11 9 27 27 H 1.08994 * 109.47717 * 270.19197 * 1 2 3 28 28 H 1.08996 * 109.47401 * 30.19777 * 1 2 3 29 29 H 1.09002 * 109.47193 * 150.19183 * 1 2 3 30 30 H 1.08997 * 109.47264 * 269.95509 * 5 4 3 31 31 H 1.08999 * 109.46957 * 29.96275 * 5 4 3 32 32 H 1.08997 * 109.46528 * 149.95520 * 5 4 3 33 33 H 1.08994 * 109.47201 * 270.00443 * 12 11 9 34 34 H 1.09000 * 109.46830 * 30.00191 * 12 11 9 35 35 H 1.08996 * 109.47301 * 149.99881 * 12 11 9 36 36 H 1.08996 * 109.45453 * 359.97332 * 13 11 9 37 37 H 1.09001 * 109.50071 * 58.66060 * 14 13 11 38 38 H 1.09005 * 109.49477 * 298.56396 * 14 13 11 39 39 H 1.09000 * 109.58954 * 174.41929 * 15 14 13 40 40 H 1.08996 * 109.58649 * 294.70243 * 15 14 13 41 41 H 0.97000 * 119.99637 * 180.02562 * 20 19 17 42 42 H 1.09000 * 109.46458 * 293.56938 * 25 16 15 43 43 H 1.08992 * 109.71060 * 173.28601 * 25 16 15 44 44 H 1.08995 * 109.49931 * 301.34255 * 26 13 11 45 45 H 1.08997 * 109.49588 * 61.40711 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2726 1.0552 0.0000 4 7 3.6111 0.6474 -0.0065 5 6 4.7762 1.5355 -0.0139 6 6 3.6479 -0.6961 -0.0041 7 9 4.7576 -1.4667 -0.0092 8 6 2.3374 -1.1443 0.0034 9 6 1.8931 -2.5473 0.0078 10 8 1.7144 -3.1254 1.0630 11 7 1.6841 -3.1917 -1.1573 12 6 1.8997 -2.4957 -2.4283 13 6 1.2412 -4.5882 -1.1529 14 6 2.2750 -5.4532 -1.8776 15 6 1.8257 -6.9173 -1.8408 16 7 0.4671 -7.0120 -2.3920 17 6 0.1870 -7.8813 -3.4123 18 1 0.9608 -8.1592 -4.1126 19 6 -1.0914 -8.4052 -3.5466 20 7 -1.9362 -8.3455 -2.5391 21 14 -1.6127 -9.1948 -5.1572 22 1 -0.4878 -9.1351 -6.1248 23 1 -1.9842 -10.6123 -4.9161 24 1 -2.7808 -8.4644 -5.7114 25 6 -0.5845 -6.1529 -1.8297 26 6 -0.1082 -4.6974 -1.8666 27 1 -0.3634 0.0034 1.0276 28 1 -0.3634 0.8882 -0.5169 29 1 -0.3634 -0.8917 -0.5109 30 1 5.0602 1.7538 -1.0434 31 1 4.5282 2.4646 0.4994 32 1 5.6071 1.0489 0.4969 33 1 0.9737 -2.0124 -2.7395 34 1 2.6780 -1.7430 -2.3028 35 1 2.2079 -3.2138 -3.1881 36 1 1.1366 -4.9327 -0.1241 37 1 3.2413 -5.3567 -1.3826 38 1 2.3619 -5.1251 -2.9135 39 1 2.5058 -7.5234 -2.4393 40 1 1.8281 -7.2745 -0.8111 41 1 -2.8295 -8.7119 -2.6328 42 1 -0.7812 -6.4470 -0.7987 43 1 -1.4960 -6.2542 -2.4187 44 1 -0.8381 -4.0629 -1.3638 45 1 0.0010 -4.3760 -2.9023 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001006347261.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:48 Heat of formation + Delta-G solvation = 9.189890 kcal Electronic energy + Delta-G solvation = -28489.240635 eV Core-core repulsion = 24458.358423 eV Total energy + Delta-G solvation = -4030.882212 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.170 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.48001 -42.56663 -40.89897 -38.92375 -36.56227 -35.25899 -34.24531 -32.19672 -31.57594 -31.10938 -30.38467 -28.00051 -27.47231 -26.55882 -24.34637 -23.86379 -22.89733 -21.81261 -20.86635 -20.29059 -18.90547 -18.62439 -18.22703 -17.60388 -17.40544 -17.20818 -16.77794 -15.98106 -15.78477 -15.73711 -15.37291 -15.18339 -14.83694 -14.59275 -14.48731 -14.42581 -14.15403 -14.08153 -13.89986 -13.68962 -13.29613 -13.25881 -13.17308 -13.01524 -12.99700 -12.62165 -12.49479 -12.11567 -12.03251 -11.93693 -11.87351 -11.46791 -11.34962 -11.04586 -10.55514 -10.43105 -9.86567 -9.64926 -8.69543 -7.85787 -5.31878 0.19419 0.85591 1.09842 1.36376 1.49045 1.50937 1.61574 2.01310 2.53421 2.71614 3.20602 3.30374 3.63021 3.68184 3.73291 3.95884 4.03670 4.11546 4.21069 4.23075 4.31198 4.34432 4.47695 4.57499 4.59131 4.66854 4.69672 4.72448 4.75058 4.86105 4.88308 4.89901 5.04877 5.06403 5.15611 5.28408 5.30457 5.47121 5.56268 5.60753 5.66436 5.72383 6.22132 6.34059 6.40643 7.04717 7.15739 7.85476 8.38880 9.21671 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.025645 B = 0.002946 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.567311 B = 9503.105560 C = 9834.866656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.131 3.869 3 N -0.277 5.277 4 N -0.365 5.365 5 C 0.081 3.919 6 C 0.289 3.711 7 F -0.089 7.089 8 C -0.302 4.302 9 C 0.595 3.405 10 O -0.578 6.578 11 N -0.592 5.592 12 C 0.081 3.919 13 C 0.154 3.846 14 C -0.123 4.123 15 C 0.145 3.855 16 N -0.609 5.609 17 C -0.260 4.260 18 H 0.071 0.929 19 C -0.051 4.051 20 N -0.937 5.937 21 Si 0.969 3.031 22 H -0.264 1.264 23 H -0.295 1.295 24 H -0.289 1.289 25 C 0.182 3.818 26 C -0.125 4.125 27 H 0.091 0.909 28 H 0.104 0.896 29 H 0.078 0.922 30 H 0.104 0.896 31 H 0.115 0.885 32 H 0.106 0.894 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.064 0.936 40 H 0.007 0.993 41 H 0.250 0.750 42 H -0.010 1.010 43 H 0.061 0.939 44 H 0.062 0.938 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.418 23.363 1.196 26.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.035 4.035 3 N -0.100 5.100 4 N -0.150 5.150 5 C -0.058 4.058 6 C 0.140 3.860 7 F -0.068 7.068 8 C -0.318 4.318 9 C 0.382 3.618 10 O -0.458 6.458 11 N -0.322 5.322 12 C -0.061 4.061 13 C 0.051 3.949 14 C -0.162 4.162 15 C 0.018 3.982 16 N -0.332 5.332 17 C -0.390 4.390 18 H 0.088 0.912 19 C -0.247 4.247 20 N -0.583 5.583 21 Si 0.797 3.203 22 H -0.188 1.188 23 H -0.223 1.223 24 H -0.216 1.216 25 C 0.055 3.945 26 C -0.165 4.165 27 H 0.109 0.891 28 H 0.123 0.877 29 H 0.097 0.903 30 H 0.123 0.877 31 H 0.134 0.866 32 H 0.125 0.875 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.101 0.899 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.094 0.906 39 H 0.082 0.918 40 H 0.025 0.975 41 H 0.059 0.941 42 H 0.008 0.992 43 H 0.079 0.921 44 H 0.080 0.920 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 12.427 24.336 1.715 27.379 hybrid contribution -0.138 -1.928 -0.333 1.962 sum 12.289 22.408 1.382 25.594 Atomic orbital electron populations 1.20420 0.83829 1.04910 1.04610 1.22463 0.98133 0.87261 0.95613 1.77288 0.84679 1.20932 1.27100 1.49029 1.07956 1.02240 1.55757 1.22526 0.82454 0.94618 1.06175 1.17713 0.82893 0.82693 1.02704 1.91663 1.49536 1.71774 1.93802 1.19560 0.91512 0.94690 1.26067 1.17449 0.76363 0.84738 0.83230 1.90773 1.53660 1.68770 1.32573 1.48030 1.65207 1.12345 1.06635 1.21864 1.02301 0.97522 0.84409 1.20885 0.94326 0.79724 0.99977 1.22179 0.97473 0.95700 1.00894 1.20976 0.86774 0.94494 0.95907 1.44348 1.05360 1.43328 1.40177 1.19560 0.96318 1.19759 1.03373 0.91170 1.25837 0.98612 0.99859 1.00360 1.70204 1.07074 1.50274 1.30744 0.85190 0.78039 0.77142 0.79952 1.18840 1.22254 1.21597 1.20522 0.92223 0.86795 0.94919 1.22270 0.95631 0.98167 1.00451 0.89074 0.87729 0.90335 0.87739 0.86639 0.87518 0.91025 0.90847 0.89885 0.91400 0.91254 0.90630 0.91800 0.97467 0.94102 0.99201 0.92056 0.91970 0.91192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.40 10.28 71.24 0.73 -0.66 16 2 C 0.13 2.94 7.26 43.55 0.32 3.26 16 3 N -0.28 -5.79 12.49 -46.65 -0.58 -6.37 16 4 N -0.37 -6.58 3.98 -368.86 -1.47 -8.05 16 5 C 0.08 0.60 11.43 127.77 1.46 2.06 16 6 C 0.29 6.55 8.37 84.36 0.71 7.25 16 7 F -0.09 -1.98 17.31 44.97 0.78 -1.21 16 8 C -0.30 -7.93 4.13 -20.09 -0.08 -8.02 16 9 C 0.60 19.35 7.22 86.59 0.62 19.97 16 10 O -0.58 -23.87 16.43 -4.15 -0.07 -23.94 16 11 N -0.59 -17.56 2.76 -826.61 -2.28 -19.84 16 12 C 0.08 1.77 9.35 127.77 1.19 2.96 16 13 C 0.15 5.47 2.48 45.02 0.11 5.58 16 14 C -0.12 -4.19 5.31 30.67 0.16 -4.03 16 15 C 0.14 6.10 6.51 86.36 0.56 6.66 16 16 N -0.61 -30.62 3.00 -699.01 -2.10 -32.72 16 17 C -0.26 -14.14 9.58 84.03 0.81 -13.34 16 18 H 0.07 3.69 7.88 -2.91 -0.02 3.66 16 19 C -0.05 -2.86 4.92 84.86 0.42 -2.44 16 20 N -0.94 -55.70 11.20 21.65 0.24 -55.46 16 21 Si 0.97 44.42 29.59 68.60 2.03 46.45 16 22 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 23 H -0.30 -13.68 7.11 99.48 0.71 -12.98 16 24 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 25 C 0.18 8.89 5.30 86.35 0.46 9.35 16 26 C -0.13 -4.72 5.34 30.67 0.16 -4.56 16 27 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.08 1.48 8.01 -2.39 -0.02 1.46 16 30 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.07 1.42 6.62 -2.39 -0.02 1.40 16 35 H 0.08 1.75 6.45 -2.39 -0.02 1.74 16 36 H 0.07 2.85 6.90 -2.39 -0.02 2.83 16 37 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 38 H 0.08 2.40 6.72 -2.38 -0.02 2.39 16 39 H 0.06 2.57 7.93 -2.39 -0.02 2.55 16 40 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 41 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 42 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 43 H 0.06 3.35 6.07 -2.39 -0.01 3.33 16 44 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 45 H 0.07 2.49 7.72 -2.39 -0.02 2.47 16 Total: -1.00 -73.28 369.59 5.18 -68.10 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: 1.00 Total: 8.98 kcal Atomic # 6 Polarization: 16.42 SS G_CDS: 7.63 Total: 24.05 kcal Atomic # 7 Polarization: -116.25 SS G_CDS: -6.19 Total: -122.44 kcal Atomic # 8 Polarization: -23.87 SS G_CDS: -0.07 Total: -23.94 kcal Atomic # 9 Polarization: -1.98 SS G_CDS: 0.78 Total: -1.21 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -73.28 5.18 -68.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006347261.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.294 kcal (2) G-P(sol) polarization free energy of solvation -73.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds