Wall clock time and date at job start Tue Mar 31 2020 13:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86792 * 120.00330 * 2 1 4 4 H 1.48498 * 109.47190 * 239.99984 * 3 2 1 5 5 H 1.48508 * 109.47035 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47394 * 119.99380 * 3 2 1 7 7 C 1.38813 * 119.99447 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99573 * 163.08769 * 7 2 1 9 9 N 1.36931 * 120.00489 * 343.08129 * 7 2 1 10 10 C 1.46926 * 120.63179 * 331.82627 * 9 7 2 11 11 C 1.53197 * 108.77432 * 233.62881 * 10 9 7 12 12 C 1.53044 * 109.30903 * 305.36378 * 11 10 9 13 13 C 1.53030 * 109.54314 * 61.36465 * 12 11 10 14 14 H 1.09004 * 109.49754 * 58.61287 * 13 12 11 15 15 N 1.46498 * 109.50265 * 178.68078 * 13 12 11 16 16 C 1.34771 * 120.00417 * 204.99620 * 15 13 12 17 17 O 1.21285 * 120.00030 * 0.02562 * 16 15 13 18 18 C 1.50695 * 120.00172 * 179.97438 * 16 15 13 19 19 H 1.09001 * 109.86036 * 304.02898 * 18 16 15 20 20 O 1.43356 * 109.87127 * 182.91448 * 18 16 15 21 21 C 1.43979 * 109.98097 * 240.53448 * 20 18 16 22 22 C 1.53991 * 104.53116 * 336.37295 * 21 20 18 23 23 H 1.09006 * 109.50467 * 281.36706 * 22 21 20 24 24 C 1.50958 * 112.60847 * 159.02624 * 22 21 20 25 25 O 1.42677 * 111.79540 * 293.71994 * 24 22 21 26 26 C 1.43265 * 112.52554 * 299.93679 * 25 24 22 27 27 C 1.52716 * 108.26384 * 65.59379 * 26 25 24 28 28 C 1.53114 * 110.61826 * 299.80265 * 27 26 25 29 29 H 1.09004 * 112.28123 * 283.03487 * 28 27 26 30 30 C 1.46926 * 120.63166 * 151.83981 * 9 7 2 31 31 H 0.96997 * 119.99477 * 0.02562 * 1 2 3 32 32 H 1.08995 * 109.59469 * 113.84099 * 10 9 7 33 33 H 1.09001 * 109.58551 * 353.40871 * 10 9 7 34 34 H 1.09000 * 109.49719 * 65.30953 * 11 10 9 35 35 H 1.08992 * 109.49790 * 185.37959 * 11 10 9 36 36 H 1.09001 * 109.45899 * 181.39047 * 12 11 10 37 37 H 1.09000 * 109.45551 * 301.34207 * 12 11 10 38 38 H 0.97001 * 119.99188 * 25.00254 * 15 13 12 39 39 H 1.09004 * 110.42671 * 217.60984 * 21 20 18 40 40 H 1.08999 * 110.42805 * 95.13092 * 21 20 18 41 41 H 1.09002 * 109.01730 * 173.11730 * 24 22 21 42 42 H 1.09000 * 108.94991 * 54.27521 * 24 22 21 43 43 H 1.08997 * 109.70031 * 305.90375 * 26 25 24 44 44 H 1.08996 * 109.70393 * 185.28625 * 26 25 24 45 45 H 1.09005 * 109.24705 * 179.50924 * 27 26 25 46 46 H 1.09005 * 109.21888 * 60.07736 * 27 26 25 47 47 H 1.09002 * 109.58692 * 6.58732 * 30 9 7 48 48 H 1.08999 * 109.70939 * 246.22924 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1041 1.6962 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0552 -1.2226 -0.2716 9 7 1.3700 -2.3623 0.3461 10 6 0.2262 -2.3400 1.2680 11 6 0.4982 -3.3186 2.4149 12 6 0.8131 -4.7004 1.8372 13 6 2.0681 -4.6169 0.9656 14 1 2.9033 -4.2531 1.5642 15 7 2.3868 -5.9461 0.4385 16 6 3.6529 -6.2460 0.0872 17 8 4.5286 -5.4157 0.2078 18 6 3.9807 -7.6135 -0.4545 19 1 3.6646 -8.3784 0.2549 20 8 5.3906 -7.7185 -0.6918 21 6 5.6366 -7.9814 -2.0859 22 6 4.3325 -8.6236 -2.5939 23 1 4.3015 -9.6711 -2.2937 24 6 4.1793 -8.5189 -4.0921 25 8 4.0181 -7.1657 -4.5148 26 6 2.8613 -6.5455 -3.9406 27 6 3.0744 -6.4392 -2.4321 28 6 3.2645 -7.8276 -1.8153 29 1 2.3227 -8.3667 -1.7125 30 6 1.8140 -3.6530 -0.1976 31 1 -0.4849 0.8401 -0.0004 32 1 -0.6770 -2.6411 0.7373 33 1 0.0991 -1.3342 1.6684 34 1 1.3480 -2.9666 2.9997 35 1 -0.3820 -3.3831 3.0545 36 1 0.9827 -5.4045 2.6518 37 1 -0.0272 -5.0410 1.2322 38 1 1.6864 -6.6103 0.3423 39 1 6.4712 -8.6731 -2.2010 40 1 5.8355 -7.0518 -2.6190 41 1 3.3063 -9.0939 -4.4009 42 1 5.0661 -8.9366 -4.5686 43 1 1.9793 -7.1522 -4.1453 44 1 2.7298 -5.5499 -4.3643 45 1 2.2058 -5.9607 -1.9794 46 1 3.9602 -5.8347 -2.2365 47 1 2.7345 -3.5135 -0.7644 48 1 1.0421 -4.0623 -0.8494 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001008039907.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:36 Heat of formation + Delta-G solvation = -128.514074 kcal Electronic energy + Delta-G solvation = -29715.786386 eV Core-core repulsion = 25770.100436 eV Total energy + Delta-G solvation = -3945.685950 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.28954 -40.43148 -39.05181 -38.32646 -35.98129 -34.58325 -33.84970 -32.85272 -32.35471 -30.90747 -29.27533 -27.27932 -26.46171 -24.93884 -24.50227 -23.86988 -23.12066 -21.38816 -20.78462 -20.57221 -18.74283 -18.38028 -17.96552 -17.43669 -17.13991 -16.94246 -16.60848 -16.21174 -16.01768 -15.81471 -15.67344 -15.26856 -15.07921 -14.76453 -14.64789 -14.22298 -14.13266 -14.04231 -13.76100 -13.43317 -13.16077 -13.07994 -13.02851 -12.76804 -12.65224 -12.56745 -12.16325 -12.07479 -11.98445 -11.79832 -11.69455 -11.56996 -11.33574 -11.27165 -11.14487 -10.64177 -10.57917 -10.33919 -10.08068 -8.70770 -7.93502 -5.38996 1.41541 1.43389 1.51041 1.58946 1.97460 2.47428 2.82654 2.97306 3.16261 3.20529 3.48703 3.59440 3.73348 3.83899 3.93326 3.98104 4.03131 4.10168 4.18210 4.23909 4.31241 4.35507 4.46381 4.49436 4.55458 4.60406 4.66351 4.68765 4.75694 4.80333 4.84638 4.90836 4.96733 5.00211 5.10460 5.11597 5.15587 5.22495 5.26623 5.45714 5.55040 5.60672 5.74830 5.80503 6.19927 6.34385 6.61920 7.10654 7.31800 7.80477 8.29547 9.11679 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.015756 B = 0.003640 C = 0.003342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.719148 B = 7690.711325 C = 8375.441941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.038 4.038 3 Si 0.962 3.038 4 H -0.280 1.280 5 H -0.283 1.283 6 H -0.281 1.281 7 C -0.271 4.271 8 H 0.047 0.953 9 N -0.607 5.607 10 C 0.172 3.828 11 C -0.131 4.131 12 C -0.102 4.102 13 C 0.141 3.859 14 H 0.047 0.953 15 N -0.702 5.702 16 C 0.499 3.501 17 O -0.584 6.584 18 C 0.067 3.933 19 H 0.142 0.858 20 O -0.383 6.383 21 C 0.049 3.951 22 C -0.141 4.141 23 H 0.133 0.867 24 C 0.064 3.936 25 O -0.401 6.401 26 C 0.063 3.937 27 C -0.163 4.163 28 C -0.093 4.093 29 H 0.154 0.846 30 C 0.151 3.849 31 H 0.253 0.747 32 H 0.009 0.991 33 H 0.053 0.947 34 H 0.042 0.958 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.417 0.583 39 H 0.112 0.888 40 H 0.036 0.964 41 H 0.083 0.917 42 H 0.110 0.890 43 H 0.086 0.914 44 H 0.081 0.919 45 H 0.079 0.921 46 H 0.033 0.967 47 H 0.021 0.979 48 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.756 -25.394 -3.794 25.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.235 4.235 3 Si 0.789 3.211 4 H -0.206 1.206 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.402 4.402 8 H 0.064 0.936 9 N -0.331 5.331 10 C 0.047 3.953 11 C -0.171 4.171 12 C -0.140 4.140 13 C 0.035 3.965 14 H 0.066 0.934 15 N -0.356 5.356 16 C 0.286 3.714 17 O -0.463 6.463 18 C 0.006 3.994 19 H 0.160 0.840 20 O -0.301 6.301 21 C -0.027 4.027 22 C -0.160 4.160 23 H 0.151 0.849 24 C -0.012 4.012 25 O -0.320 6.320 26 C -0.014 4.014 27 C -0.201 4.201 28 C -0.111 4.111 29 H 0.172 0.828 30 C 0.024 3.976 31 H 0.062 0.938 32 H 0.027 0.973 33 H 0.071 0.929 34 H 0.061 0.939 35 H 0.105 0.895 36 H 0.106 0.894 37 H 0.100 0.900 38 H 0.255 0.745 39 H 0.130 0.870 40 H 0.054 0.946 41 H 0.101 0.899 42 H 0.128 0.872 43 H 0.104 0.896 44 H 0.099 0.901 45 H 0.098 0.902 46 H 0.052 0.948 47 H 0.039 0.961 48 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 1.579 -24.548 -3.693 24.874 hybrid contribution 0.202 1.524 -0.005 1.538 sum 1.781 -23.023 -3.698 23.386 Atomic orbital electron populations 1.70143 1.06205 1.26100 1.54625 1.25659 0.96112 1.00972 1.00725 0.85441 0.77836 0.79631 0.78153 1.20627 1.20845 1.20723 1.19296 0.92247 0.86551 1.42065 0.93559 1.44200 1.36099 1.01628 1.51212 1.20718 0.87567 0.98055 0.88949 1.22034 1.01265 0.95492 0.98309 1.21603 0.95820 0.97533 0.99076 1.21227 0.97743 0.82293 0.95255 0.93436 1.45842 1.09377 1.15040 1.65386 1.21601 0.82399 0.90696 0.76674 1.90734 1.48712 1.51811 1.55008 1.23165 0.83317 0.93061 0.99836 0.84032 1.88560 1.21909 1.92634 1.27028 1.23485 0.99293 0.99452 0.80469 1.22737 0.93142 1.02610 0.97498 0.84937 1.22124 1.04195 0.83030 0.91838 1.88141 1.47024 1.27573 1.69287 1.22579 0.88742 0.98902 0.91131 1.22355 1.02134 0.97309 0.98332 1.22844 1.01119 0.96018 0.91144 0.82803 1.21153 0.96064 0.86430 0.93930 0.93759 0.97307 0.92886 0.93886 0.89538 0.89426 0.90010 0.74489 0.87040 0.94591 0.89871 0.87214 0.89578 0.90058 0.90199 0.94814 0.96075 0.95585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.13 11.20 21.65 0.24 -54.88 16 2 C -0.04 -2.23 4.92 84.86 0.42 -1.81 16 3 Si 0.96 47.06 29.59 68.60 2.03 49.09 16 4 H -0.28 -13.53 7.11 99.48 0.71 -12.83 16 5 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 6 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 7 C -0.27 -16.11 9.58 84.03 0.81 -15.31 16 8 H 0.05 2.85 7.89 -2.91 -0.02 2.83 16 9 N -0.61 -32.02 2.99 -699.08 -2.09 -34.11 16 10 C 0.17 8.22 5.30 86.36 0.46 8.67 16 11 C -0.13 -4.70 6.08 30.67 0.19 -4.51 16 12 C -0.10 -2.93 5.35 30.62 0.16 -2.77 16 13 C 0.14 4.99 2.61 45.07 0.12 5.11 16 14 H 0.05 2.07 7.58 -2.38 -0.02 2.05 16 15 N -0.70 -18.29 4.10 -442.18 -1.81 -20.10 16 16 C 0.50 15.48 4.97 87.66 0.44 15.92 16 17 O -0.58 -26.10 16.01 15.72 0.25 -25.85 16 18 C 0.07 1.42 3.74 30.62 0.11 1.54 16 19 H 0.14 1.89 8.14 -2.39 -0.02 1.87 16 20 O -0.38 -10.52 10.58 -130.22 -1.38 -11.90 16 21 C 0.05 1.01 6.78 72.32 0.49 1.51 16 22 C -0.14 -1.77 3.02 -10.69 -0.03 -1.80 16 23 H 0.13 0.78 8.14 -2.38 -0.02 0.76 16 24 C 0.06 0.79 6.17 71.32 0.44 1.23 16 25 O -0.40 -8.62 10.58 -148.98 -1.58 -10.19 16 26 C 0.06 1.27 6.82 71.89 0.49 1.76 16 27 C -0.16 -3.77 3.94 30.54 0.12 -3.65 16 28 C -0.09 -1.36 3.60 -9.54 -0.03 -1.40 16 29 H 0.15 0.91 8.14 -2.39 -0.02 0.89 16 30 C 0.15 6.72 6.09 86.36 0.53 7.24 16 31 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 32 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.05 2.89 6.06 -2.39 -0.01 2.88 16 34 H 0.04 1.65 8.14 -2.39 -0.02 1.64 16 35 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 36 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.42 6.80 8.60 -92.71 -0.80 6.00 16 39 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.04 0.98 7.48 -2.39 -0.02 0.97 16 41 H 0.08 0.61 8.13 -2.39 -0.02 0.59 16 42 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.09 1.20 8.11 -2.39 -0.02 1.18 16 44 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 45 H 0.08 1.92 7.03 -2.38 -0.02 1.91 16 46 H 0.03 1.12 6.38 -2.38 -0.02 1.11 16 47 H 0.02 1.05 7.93 -2.39 -0.02 1.03 16 48 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -83.07 366.55 0.52 -82.55 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: 0.16 Total: 13.66 kcal Atomic # 6 Polarization: 7.04 SS G_CDS: 4.70 Total: 11.74 kcal Atomic # 7 Polarization: -105.43 SS G_CDS: -3.66 Total: -109.09 kcal Atomic # 8 Polarization: -45.24 SS G_CDS: -2.70 Total: -47.94 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 2.03 Total: 49.09 kcal Total: -83.07 0.52 -82.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008039907.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.966 kcal (2) G-P(sol) polarization free energy of solvation -83.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds