Wall clock time and date at job start Tue Mar 31 2020 14:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86795 * 119.99997 * 2 1 4 4 H 1.48504 * 109.47305 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47073 * 300.00000 * 3 2 1 6 6 H 1.48497 * 109.47406 * 60.00025 * 3 2 1 7 7 C 1.38810 * 119.99916 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99682 * 197.86295 * 7 2 1 9 9 N 1.36943 * 120.00515 * 17.85389 * 7 2 1 10 10 C 1.46843 * 120.38759 * 208.90856 * 9 7 2 11 11 C 1.53348 * 108.80956 * 236.88587 * 10 9 7 12 12 C 1.53188 * 108.76893 * 308.68039 * 11 10 9 13 13 C 1.52845 * 117.65886 * 269.97909 * 12 11 10 14 14 C 1.52812 * 117.71443 * 201.12350 * 12 11 10 15 15 H 1.09000 * 117.50204 * 0.11164 * 14 12 11 16 16 N 1.46507 * 117.50016 * 215.10119 * 14 12 11 17 17 C 1.34770 * 119.99917 * 154.99517 * 16 14 12 18 18 O 1.21282 * 120.00359 * 0.02562 * 17 16 14 19 19 C 1.50699 * 119.99894 * 179.97438 * 17 16 14 20 20 C 1.53004 * 109.47220 * 180.02562 * 19 17 16 21 21 O 1.42967 * 109.46925 * 294.99714 * 20 19 17 22 22 C 1.43093 * 113.77201 * 181.20527 * 21 20 19 23 23 C 1.53262 * 108.94086 * 57.97014 * 22 21 20 24 24 C 1.53260 * 108.84726 * 305.48213 * 23 22 21 25 25 O 1.42969 * 109.46959 * 175.00444 * 20 19 17 26 26 C 1.53182 * 115.07168 * 55.44782 * 12 11 10 27 27 C 1.46843 * 120.37547 * 28.88690 * 9 7 2 28 28 H 0.96993 * 120.00175 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.58037 * 117.08459 * 10 9 7 30 30 H 1.09004 * 109.58044 * 356.68222 * 10 9 7 31 31 H 1.09002 * 109.58719 * 188.89937 * 11 10 9 32 32 H 1.08993 * 109.59276 * 68.46751 * 11 10 9 33 33 H 1.09004 * 117.50666 * 144.81089 * 13 12 11 34 34 H 1.09000 * 117.50578 * 359.76071 * 13 12 11 35 35 H 0.97000 * 119.99845 * 334.99655 * 16 14 12 36 36 H 1.08995 * 109.47450 * 60.00250 * 19 17 16 37 37 H 1.09004 * 109.47448 * 300.00057 * 19 17 16 38 38 H 1.08994 * 109.47401 * 55.00179 * 20 19 17 39 39 H 1.09003 * 109.55503 * 298.13596 * 22 21 20 40 40 H 1.08998 * 109.55804 * 177.81071 * 22 21 20 41 41 H 1.09005 * 109.57324 * 65.28818 * 23 22 21 42 42 H 1.08999 * 109.57278 * 185.66641 * 23 22 21 43 43 H 1.08993 * 109.55946 * 174.36364 * 24 23 22 44 44 H 1.09004 * 109.55499 * 294.57840 * 24 23 22 45 45 H 1.08998 * 109.58567 * 64.35123 * 26 12 11 46 46 H 1.09004 * 109.58370 * 184.77052 * 26 12 11 47 47 H 1.09004 * 109.57571 * 242.91895 * 27 9 7 48 48 H 1.08997 * 109.58242 * 3.32462 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0512 -1.2248 0.2864 9 7 1.3751 -2.3594 -0.3646 10 6 1.8052 -3.6491 0.1904 11 6 2.1667 -4.5892 -0.9659 12 6 1.0060 -4.6104 -1.9653 13 6 -0.0883 -5.6574 -1.7596 14 6 0.9061 -5.8047 -2.9133 15 1 1.6665 -6.5809 -2.8269 16 7 0.4115 -5.5527 -4.2691 17 6 0.7536 -6.3807 -5.2759 18 8 1.4706 -7.3347 -5.0596 19 6 0.2444 -6.1218 -6.6705 20 6 0.7758 -7.2010 -7.6160 21 8 2.1987 -7.0959 -7.7074 22 6 2.7917 -8.0496 -8.5941 23 6 2.1838 -7.8761 -9.9902 24 6 0.6581 -7.9724 -9.8813 25 8 0.2007 -7.0236 -8.9128 26 6 0.5856 -3.2382 -2.5011 27 6 0.2556 -2.3249 -1.3144 28 1 -0.4850 0.8400 0.0004 29 1 0.9943 -4.0839 0.7749 30 1 2.6776 -3.5002 0.8267 31 1 2.3353 -5.5947 -0.5803 32 1 3.0686 -4.2294 -1.4610 33 1 -1.1106 -5.3730 -2.0093 34 1 0.0176 -6.3369 -0.9139 35 1 -0.1622 -4.7899 -4.4421 36 1 0.5869 -5.1432 -7.0065 37 1 -0.8454 -6.1448 -6.6695 38 1 0.5081 -8.1850 -7.2313 39 1 2.5919 -9.0581 -8.2318 40 1 3.8680 -7.8838 -8.6415 41 1 2.4605 -6.9006 -10.3903 42 1 2.5533 -8.6614 -10.6496 43 1 0.2085 -7.7515 -10.8493 44 1 0.3774 -8.9785 -9.5697 45 1 1.4023 -2.8058 -3.0791 46 1 -0.2950 -3.3474 -3.1342 47 1 -0.6512 -2.6776 -0.8230 48 1 0.1084 -1.3046 -1.6685 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016590005.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:25 Heat of formation + Delta-G solvation = -86.715909 kcal Electronic energy + Delta-G solvation = -28021.847854 eV Core-core repulsion = 24077.974408 eV Total energy + Delta-G solvation = -3943.873445 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.47144 -39.67006 -38.31454 -35.92241 -35.46335 -33.52882 -33.10220 -31.54375 -30.25278 -30.09633 -28.17778 -26.29279 -24.41486 -24.26798 -22.45551 -21.91813 -21.44666 -20.78552 -20.22964 -18.23226 -17.92661 -17.04220 -16.90021 -16.48791 -16.12333 -15.81249 -15.21731 -15.05610 -14.82202 -14.81027 -14.12514 -13.85831 -13.59670 -13.52697 -13.30644 -13.23894 -12.95743 -12.67006 -12.35621 -12.25244 -11.86590 -11.69948 -11.48736 -11.42812 -11.41238 -11.33410 -10.95094 -10.72955 -10.47811 -10.32188 -10.26491 -10.00648 -9.94593 -9.85012 -9.68297 -9.56860 -9.33499 -8.46389 -8.41652 -6.63154 -5.78638 -3.21342 2.59243 2.79528 3.37162 3.38441 3.45566 3.48062 3.56698 4.20585 4.35345 4.37302 4.48981 4.50533 4.63726 4.74057 4.93451 4.96398 5.01889 5.03724 5.14655 5.17410 5.20671 5.37033 5.39900 5.41230 5.47726 5.53401 5.65149 5.67511 5.90058 6.06611 6.12291 6.13772 6.29993 6.46839 6.52985 6.58143 6.61193 6.67262 6.72767 6.84715 6.89499 7.01377 7.34804 7.52654 7.65414 7.80926 8.22943 8.47116 9.22543 9.86211 10.42833 11.29195 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.020175 B = 0.002404 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.500755 B =11642.656021 C =12169.046319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.001 3.999 3 Si 0.900 3.100 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.291 1.291 7 C -0.251 4.251 8 H 0.065 0.935 9 N -0.590 5.590 10 C 0.149 3.851 11 C -0.098 4.098 12 C -0.097 4.097 13 C -0.183 4.183 14 C 0.070 3.930 15 H 0.131 0.869 16 N -0.695 5.695 17 C 0.523 3.477 18 O -0.535 6.535 19 C -0.130 4.130 20 C 0.265 3.735 21 O -0.376 6.376 22 C 0.058 3.942 23 C -0.194 4.194 24 C 0.059 3.941 25 O -0.396 6.396 26 C -0.104 4.104 27 C 0.173 3.827 28 H 0.253 0.747 29 H 0.019 0.981 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.403 0.597 36 H 0.112 0.888 37 H 0.116 0.884 38 H 0.065 0.935 39 H 0.054 0.946 40 H 0.099 0.901 41 H 0.082 0.918 42 H 0.084 0.916 43 H 0.100 0.900 44 H 0.054 0.946 45 H 0.061 0.939 46 H 0.044 0.956 47 H 0.018 0.982 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.761 -16.477 -17.726 24.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.197 4.197 3 Si 0.730 3.270 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.218 1.218 7 C -0.380 4.380 8 H 0.083 0.917 9 N -0.312 5.312 10 C 0.023 3.977 11 C -0.137 4.137 12 C -0.099 4.099 13 C -0.221 4.221 14 C -0.035 4.035 15 H 0.148 0.852 16 N -0.345 5.345 17 C 0.309 3.691 18 O -0.411 6.411 19 C -0.170 4.170 20 C 0.170 3.830 21 O -0.297 6.297 22 C -0.019 4.019 23 C -0.232 4.232 24 C -0.017 4.017 25 O -0.317 6.317 26 C -0.144 4.144 27 C 0.047 3.953 28 H 0.063 0.937 29 H 0.037 0.963 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.111 0.889 34 H 0.115 0.885 35 H 0.238 0.762 36 H 0.130 0.870 37 H 0.134 0.866 38 H 0.082 0.918 39 H 0.072 0.928 40 H 0.117 0.883 41 H 0.101 0.899 42 H 0.103 0.897 43 H 0.118 0.882 44 H 0.072 0.928 45 H 0.080 0.920 46 H 0.062 0.938 47 H 0.036 0.964 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.370 -16.737 -17.494 24.214 hybrid contribution 0.069 0.843 -0.281 0.891 sum -0.301 -15.894 -17.775 23.847 Atomic orbital electron populations 1.70042 1.05268 1.25359 1.53984 1.25044 0.95257 0.98439 1.00973 0.86256 0.79466 0.84014 0.77251 1.20245 1.21574 1.21763 1.19242 0.92878 0.85029 1.40898 0.91733 1.43986 1.37827 1.01569 1.47835 1.20858 0.97413 0.86908 0.92555 1.21688 0.95941 0.99256 0.96852 1.21951 0.98197 0.91194 0.98509 1.23528 0.95899 1.03052 0.99653 1.21858 1.00919 1.02433 0.78308 0.85161 1.45351 1.51798 1.29793 1.07518 1.20090 0.80494 0.82601 0.85915 1.90706 1.36688 1.29592 1.84142 1.21465 1.02971 1.01182 0.91356 1.22844 0.79281 0.97852 0.83029 1.88199 1.20186 1.56903 1.64362 1.22617 0.98649 0.92534 0.88050 1.22823 0.97143 1.04241 0.99011 1.22630 0.93662 0.92408 0.93007 1.88060 1.66704 1.56019 1.20870 1.21809 0.99119 0.93583 0.99869 1.20750 0.88849 0.98628 0.87056 0.93724 0.96269 0.92678 0.92890 0.91823 0.88925 0.88527 0.76189 0.87007 0.86577 0.91759 0.92781 0.88305 0.89933 0.89723 0.88233 0.92764 0.92028 0.93756 0.96420 0.89213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.88 11.23 55.49 0.62 -25.26 16 2 C 0.00 0.03 4.88 -17.43 -0.09 -0.05 16 3 Si 0.90 21.58 29.59 -169.99 -5.03 16.55 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 7 C -0.25 -6.83 9.54 -15.06 -0.14 -6.98 16 8 H 0.06 1.74 7.89 -52.48 -0.41 1.33 16 9 N -0.59 -14.58 2.94 -172.26 -0.51 -15.09 16 10 C 0.15 3.11 6.52 -3.68 -0.02 3.08 16 11 C -0.10 -1.71 5.83 -26.45 -0.15 -1.86 16 12 C -0.10 -1.60 1.94 -154.49 -0.30 -1.90 16 13 C -0.18 -2.63 9.86 -26.80 -0.26 -2.90 16 14 C 0.07 1.03 6.14 -68.01 -0.42 0.62 16 15 H 0.13 2.05 7.40 -51.93 -0.38 1.67 16 16 N -0.69 -8.97 5.35 -53.89 -0.29 -9.26 16 17 C 0.52 7.04 7.71 -10.99 -0.08 6.95 16 18 O -0.53 -9.06 14.99 -8.84 -0.13 -9.19 16 19 C -0.13 -1.35 5.78 -27.88 -0.16 -1.51 16 20 C 0.27 3.02 2.80 37.16 0.10 3.13 16 21 O -0.38 -4.87 9.77 -64.75 -0.63 -5.50 16 22 C 0.06 0.54 6.96 37.29 0.26 0.80 16 23 C -0.19 -1.37 6.35 -26.46 -0.17 -1.54 16 24 C 0.06 0.44 6.96 37.29 0.26 0.70 16 25 O -0.40 -4.17 10.54 -59.03 -0.62 -4.79 16 26 C -0.10 -1.90 5.37 -26.46 -0.14 -2.04 16 27 C 0.17 4.01 5.40 -3.68 -0.02 3.99 16 28 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 29 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 1.13 7.92 -51.93 -0.41 0.72 16 31 H 0.05 0.80 8.10 -51.93 -0.42 0.38 16 32 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.10 1.32 8.14 -51.93 -0.42 0.89 16 35 H 0.40 4.46 7.12 -40.82 -0.29 4.17 16 36 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.12 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.07 0.74 7.95 -51.93 -0.41 0.33 16 39 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 45 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 46 H 0.04 0.68 6.75 -51.93 -0.35 0.33 16 47 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.09 2.34 5.93 -51.93 -0.31 2.03 16 LS Contribution 379.13 15.07 5.71 5.71 Total: -1.00 -32.72 379.13 -10.26 -42.98 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -8.05 Total: 3.36 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: -1.34 Total: 0.49 kcal Atomic # 7 Polarization: -49.44 SS G_CDS: -0.17 Total: -49.61 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: -1.39 Total: -19.49 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.03 Total: 16.55 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.72 -10.26 -42.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016590005.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.735 kcal (2) G-P(sol) polarization free energy of solvation -32.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds