Wall clock time and date at job start Tue Mar 31 2020 14:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30376 * 125.96596 * 2 1 4 4 N 1.39913 * 109.02407 * 179.97438 * 3 2 1 5 5 C 1.46502 * 125.74027 * 180.02562 * 4 3 2 6 6 C 1.34413 * 108.51308 * 359.72849 * 4 3 2 7 7 F 1.35101 * 126.34219 * 180.28926 * 6 4 3 8 8 C 1.38503 * 107.31049 * 0.42549 * 6 4 3 9 9 C 1.47163 * 126.45729 * 179.83425 * 8 6 4 10 10 O 1.21633 * 120.00457 * 269.69653 * 9 8 6 11 11 N 1.34780 * 119.99959 * 89.68974 * 9 8 6 12 12 C 1.46495 * 120.00174 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.47310 * 180.02562 * 12 11 9 14 14 H 1.09001 * 109.51923 * 55.09009 * 13 12 11 15 15 C 1.53076 * 109.62376 * 175.11021 * 13 12 11 16 16 C 1.53038 * 109.65976 * 181.17508 * 15 13 12 17 17 C 1.53191 * 109.31003 * 298.70288 * 16 15 13 18 18 N 1.46925 * 108.78102 * 54.63368 * 17 16 15 19 19 C 1.36937 * 120.63413 * 126.41583 * 18 17 16 20 20 H 1.08000 * 119.99761 * 331.81126 * 19 18 17 21 21 C 1.38806 * 120.00219 * 151.81378 * 19 18 17 22 22 N 1.31624 * 120.00191 * 343.07619 * 21 19 18 23 23 Si 1.86800 * 120.00146 * 163.07294 * 21 19 18 24 24 H 1.48506 * 109.46812 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.47258 * 119.99807 * 23 21 19 26 26 H 1.48499 * 109.47344 * 240.00342 * 23 21 19 27 27 C 1.46922 * 118.73547 * 306.39257 * 18 17 16 28 28 H 1.09000 * 109.47365 * 270.02265 * 1 2 3 29 29 H 1.09001 * 109.47343 * 30.02853 * 1 2 3 30 30 H 1.09005 * 109.46583 * 150.02555 * 1 2 3 31 31 H 1.08996 * 109.47052 * 89.98203 * 5 4 3 32 32 H 1.09004 * 109.46995 * 209.97618 * 5 4 3 33 33 H 1.08999 * 109.47426 * 329.97647 * 5 4 3 34 34 H 0.96995 * 119.99660 * 0.02562 * 11 9 8 35 35 H 1.09007 * 109.46855 * 60.00946 * 12 11 9 36 36 H 1.09004 * 109.47538 * 300.00892 * 12 11 9 37 37 H 1.08994 * 109.34643 * 61.14444 * 15 13 12 38 38 H 1.08998 * 109.44042 * 301.25617 * 15 13 12 39 39 H 1.08994 * 109.50160 * 178.74692 * 16 15 13 40 40 H 1.09000 * 109.49510 * 58.64559 * 16 15 13 41 41 H 1.09001 * 109.58317 * 294.84482 * 17 16 15 42 42 H 1.09005 * 109.70935 * 174.49370 * 17 16 15 43 43 H 0.96995 * 120.00379 * 180.02562 * 22 21 19 44 44 H 1.09003 * 109.58836 * 173.39156 * 27 18 17 45 45 H 1.08998 * 109.58900 * 293.67675 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2727 1.0552 0.0000 4 7 3.6111 0.6475 0.0006 5 6 4.7762 1.5357 0.0013 6 6 3.6479 -0.6961 0.0070 7 9 4.7577 -1.4665 0.0151 8 6 2.3375 -1.1443 0.0007 9 6 1.8931 -2.5473 0.0008 10 8 1.7099 -3.1274 -1.0524 11 7 1.6893 -3.1895 1.1681 12 6 1.2464 -4.5859 1.1684 13 6 1.0915 -5.0716 2.6109 14 1 0.4190 -4.4041 3.1498 15 6 0.5131 -6.4889 2.6169 16 6 0.3304 -6.9644 4.0600 17 6 1.6929 -6.9954 4.7595 18 7 2.3189 -5.6720 4.6349 19 6 2.7617 -5.0023 5.7442 20 1 2.2901 -5.1712 6.7010 21 6 3.8167 -4.1064 5.6389 22 7 4.6028 -4.1363 4.5836 23 14 4.1209 -2.8582 6.9950 24 1 3.1047 -3.0312 8.0640 25 1 5.4770 -3.0655 7.5636 26 1 4.0231 -1.4860 6.4358 27 6 2.4610 -5.0810 3.2973 28 1 -0.3634 0.0004 1.0276 29 1 -0.3634 0.8897 -0.5143 30 1 -0.3633 -0.8903 -0.5135 31 1 5.0644 1.7560 1.0291 32 1 5.6051 1.0480 -0.5118 33 1 4.5260 2.4636 -0.5128 34 1 1.8351 -2.7268 2.0081 35 1 1.9851 -5.2014 0.6548 36 1 0.2883 -4.6634 0.6543 37 1 1.1967 -7.1600 2.0971 38 1 -0.4517 -6.4891 2.1096 39 1 -0.1022 -7.9648 4.0615 40 1 -0.3337 -6.2795 4.5874 41 1 2.3282 -7.7458 4.2889 42 1 1.5596 -7.2387 5.8136 43 1 5.3403 -3.5106 4.5103 44 1 2.8320 -4.0599 3.3865 45 1 3.1608 -5.6738 2.7083 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023725227.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:02 Heat of formation + Delta-G solvation = 10.996936 kcal Electronic energy + Delta-G solvation = -28366.018857 eV Core-core repulsion = 24335.215005 eV Total energy + Delta-G solvation = -4030.803852 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.170 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.29114 -41.43377 -39.14223 -37.66127 -34.57137 -34.30117 -33.04773 -31.13740 -30.34986 -29.85213 -29.45525 -26.50759 -25.36669 -25.09100 -22.57188 -22.04593 -20.88916 -20.69879 -20.03181 -19.06063 -17.92582 -16.97945 -16.85693 -16.56250 -16.10212 -15.63427 -15.12359 -14.76012 -14.48018 -14.27470 -14.03553 -13.74982 -13.64937 -13.56644 -13.44482 -13.20257 -12.89118 -12.79493 -12.55518 -12.32584 -12.25332 -12.18250 -12.05648 -11.24166 -11.03866 -10.99211 -10.76288 -10.49565 -10.22810 -10.17680 -9.96169 -9.85032 -9.55546 -9.44960 -9.42939 -8.78739 -8.70493 -8.50940 -6.68913 -5.82136 -3.24804 1.30275 1.81092 2.18609 2.73322 3.31717 3.40749 3.42743 3.56578 3.78163 4.24734 4.45306 4.64929 4.84490 4.94757 5.08113 5.11688 5.15230 5.24119 5.32492 5.46923 5.55994 5.58737 5.59838 5.60964 5.68932 5.81237 5.98530 6.11943 6.22965 6.29814 6.30899 6.41946 6.50068 6.57849 6.66075 6.74414 6.82825 6.85944 7.01141 7.25293 7.30697 7.60769 7.76401 7.82031 8.41163 8.46799 9.17915 9.81435 10.38949 11.25530 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.010709 B = 0.004531 C = 0.003586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2614.117509 B = 6177.751612 C = 7806.113844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.132 3.868 3 N -0.275 5.275 4 N -0.376 5.376 5 C 0.093 3.907 6 C 0.300 3.700 7 F -0.083 7.083 8 C -0.289 4.289 9 C 0.597 3.403 10 O -0.540 6.540 11 N -0.706 5.706 12 C 0.130 3.870 13 C -0.128 4.128 14 H 0.070 0.930 15 C -0.100 4.100 16 C -0.132 4.132 17 C 0.143 3.857 18 N -0.593 5.593 19 C -0.251 4.251 20 H 0.066 0.934 21 C 0.002 3.998 22 N -0.900 5.900 23 Si 0.898 3.102 24 H -0.277 1.277 25 H -0.290 1.290 26 H -0.290 1.290 27 C 0.179 3.821 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.099 0.901 34 H 0.407 0.593 35 H 0.066 0.934 36 H 0.061 0.939 37 H 0.056 0.944 38 H 0.048 0.952 39 H 0.051 0.949 40 H 0.057 0.943 41 H 0.017 0.983 42 H 0.052 0.948 43 H 0.252 0.748 44 H 0.087 0.913 45 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.330 8.237 -8.945 13.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.035 4.035 3 N -0.098 5.098 4 N -0.161 5.161 5 C -0.047 4.047 6 C 0.152 3.848 7 F -0.062 7.062 8 C -0.305 4.305 9 C 0.381 3.619 10 O -0.418 6.418 11 N -0.357 5.357 12 C 0.006 3.994 13 C -0.148 4.148 14 H 0.088 0.912 15 C -0.138 4.138 16 C -0.172 4.172 17 C 0.017 3.983 18 N -0.315 5.315 19 C -0.380 4.380 20 H 0.083 0.917 21 C -0.196 4.196 22 N -0.544 5.544 23 Si 0.728 3.272 24 H -0.202 1.202 25 H -0.217 1.217 26 H -0.217 1.217 27 C 0.052 3.948 28 H 0.106 0.894 29 H 0.100 0.900 30 H 0.103 0.897 31 H 0.103 0.897 32 H 0.110 0.890 33 H 0.118 0.882 34 H 0.242 0.758 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.076 0.924 41 H 0.035 0.965 42 H 0.071 0.929 43 H 0.062 0.938 44 H 0.105 0.895 45 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -5.084 9.215 -9.695 14.309 hybrid contribution 0.978 -0.055 1.117 1.485 sum -4.106 9.160 -8.578 13.204 Atomic orbital electron populations 1.20325 0.85245 1.04163 1.03945 1.22165 0.97144 0.88035 0.96122 1.77258 0.84181 1.21239 1.27103 1.48627 1.07231 1.02649 1.57551 1.22064 0.83684 0.94520 1.04473 1.17813 0.83553 0.81775 1.01611 1.91701 1.49506 1.71436 1.93599 1.19706 0.90359 0.95801 1.24634 1.16969 0.77090 0.83875 0.83963 1.90770 1.51887 1.67620 1.31483 1.46049 1.67410 1.13800 1.08408 1.21434 0.99285 0.80743 0.97905 1.22140 1.02378 0.96672 0.93646 0.91170 1.21333 0.99378 0.96030 0.97052 1.21980 0.99707 0.99429 0.96054 1.20933 0.91279 0.88289 0.97839 1.44040 1.69356 1.14768 1.03322 1.19228 1.10490 1.19372 0.88933 0.91664 1.25034 0.95410 1.01594 0.97582 1.70050 1.17048 1.37620 1.29713 0.86292 0.77735 0.81488 0.81720 1.20214 1.21732 1.21674 1.20794 0.89381 1.00236 0.84349 0.89427 0.90010 0.89726 0.89714 0.88998 0.88246 0.75775 0.91588 0.92057 0.92483 0.93353 0.93067 0.92427 0.96523 0.92940 0.93764 0.89529 0.96314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.80 10.28 36.00 0.37 -0.43 16 2 C 0.13 1.81 7.26 -82.01 -0.60 1.22 16 3 N -0.28 -3.80 12.49 33.91 0.42 -3.37 16 4 N -0.38 -4.91 3.98 -67.94 -0.27 -5.18 16 5 C 0.09 0.76 11.43 59.85 0.68 1.45 16 6 C 0.30 4.58 8.70 -16.32 -0.14 4.44 16 7 F -0.08 -1.32 17.31 2.25 0.04 -1.28 16 8 C -0.29 -4.57 5.89 -104.98 -0.62 -5.18 16 9 C 0.60 10.39 7.35 -12.64 -0.09 10.29 16 10 O -0.54 -10.86 17.11 5.25 0.09 -10.77 16 11 N -0.71 -11.75 5.33 -61.46 -0.33 -12.08 16 12 C 0.13 2.15 5.08 -4.04 -0.02 2.13 16 13 C -0.13 -2.27 2.38 -90.48 -0.22 -2.48 16 14 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 15 C -0.10 -1.61 5.17 -26.67 -0.14 -1.74 16 16 C -0.13 -2.22 6.09 -26.61 -0.16 -2.38 16 17 C 0.14 2.94 6.52 -3.71 -0.02 2.91 16 18 N -0.59 -14.41 3.00 -172.32 -0.52 -14.92 16 19 C -0.25 -6.69 9.58 -15.06 -0.14 -6.84 16 20 H 0.07 1.73 7.89 -52.49 -0.41 1.31 16 21 C 0.00 0.06 4.92 -17.43 -0.09 -0.02 16 22 N -0.90 -25.36 11.20 55.49 0.62 -24.74 16 23 Si 0.90 21.17 29.59 -169.99 -5.03 16.14 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 27 C 0.18 4.04 4.38 -3.71 -0.02 4.02 16 28 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.08 0.87 8.01 -51.93 -0.42 0.45 16 31 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.41 6.76 7.68 -40.82 -0.31 6.45 16 35 H 0.07 1.17 8.14 -51.92 -0.42 0.75 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.05 1.06 7.93 -51.93 -0.41 0.65 16 43 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 44 H 0.09 2.15 5.26 -51.93 -0.27 1.88 16 45 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 375.39 15.07 5.66 5.66 Total: -1.00 -32.52 375.39 -7.40 -39.92 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -6.88 Total: 3.24 kcal Atomic # 6 Polarization: 8.58 SS G_CDS: -1.20 Total: 7.38 kcal Atomic # 7 Polarization: -60.22 SS G_CDS: -0.07 Total: -60.29 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: 0.09 Total: -10.77 kcal Atomic # 9 Polarization: -1.32 SS G_CDS: 0.04 Total: -1.28 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.03 Total: 16.14 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.52 -7.40 -39.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023725227.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.916 kcal (2) G-P(sol) polarization free energy of solvation -32.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds