Wall clock time and date at job start Tue Mar 31 2020 14:33:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30376 * 125.96596 * 2 1 4 4 N 1.39913 * 109.02407 * 179.97438 * 3 2 1 5 5 C 1.46502 * 125.74027 * 180.02562 * 4 3 2 6 6 C 1.34413 * 108.51308 * 359.72849 * 4 3 2 7 7 F 1.35101 * 126.34219 * 180.28926 * 6 4 3 8 8 C 1.38503 * 107.31049 * 0.42549 * 6 4 3 9 9 C 1.47163 * 126.45729 * 179.83425 * 8 6 4 10 10 O 1.21633 * 120.00457 * 269.69653 * 9 8 6 11 11 N 1.34780 * 119.99959 * 89.68974 * 9 8 6 12 12 C 1.46495 * 120.00174 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.47310 * 180.02562 * 12 11 9 14 14 H 1.09001 * 109.51923 * 55.09009 * 13 12 11 15 15 C 1.53076 * 109.62376 * 175.11021 * 13 12 11 16 16 C 1.53038 * 109.65976 * 181.17508 * 15 13 12 17 17 C 1.53191 * 109.31003 * 298.70288 * 16 15 13 18 18 N 1.46925 * 108.78102 * 54.63368 * 17 16 15 19 19 C 1.36937 * 120.63413 * 126.41583 * 18 17 16 20 20 H 1.08000 * 119.99761 * 331.81126 * 19 18 17 21 21 C 1.38806 * 120.00219 * 151.81378 * 19 18 17 22 22 N 1.31624 * 120.00191 * 343.07619 * 21 19 18 23 23 Si 1.86800 * 120.00146 * 163.07294 * 21 19 18 24 24 H 1.48506 * 109.46812 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.47258 * 119.99807 * 23 21 19 26 26 H 1.48499 * 109.47344 * 240.00342 * 23 21 19 27 27 C 1.46922 * 118.73547 * 306.39257 * 18 17 16 28 28 H 1.09000 * 109.47365 * 270.02265 * 1 2 3 29 29 H 1.09001 * 109.47343 * 30.02853 * 1 2 3 30 30 H 1.09005 * 109.46583 * 150.02555 * 1 2 3 31 31 H 1.08996 * 109.47052 * 89.98203 * 5 4 3 32 32 H 1.09004 * 109.46995 * 209.97618 * 5 4 3 33 33 H 1.08999 * 109.47426 * 329.97647 * 5 4 3 34 34 H 0.96995 * 119.99660 * 0.02562 * 11 9 8 35 35 H 1.09007 * 109.46855 * 60.00946 * 12 11 9 36 36 H 1.09004 * 109.47538 * 300.00892 * 12 11 9 37 37 H 1.08994 * 109.34643 * 61.14444 * 15 13 12 38 38 H 1.08998 * 109.44042 * 301.25617 * 15 13 12 39 39 H 1.08994 * 109.50160 * 178.74692 * 16 15 13 40 40 H 1.09000 * 109.49510 * 58.64559 * 16 15 13 41 41 H 1.09001 * 109.58317 * 294.84482 * 17 16 15 42 42 H 1.09005 * 109.70935 * 174.49370 * 17 16 15 43 43 H 0.96995 * 120.00379 * 180.02562 * 22 21 19 44 44 H 1.09003 * 109.58836 * 173.39156 * 27 18 17 45 45 H 1.08998 * 109.58900 * 293.67675 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2727 1.0552 0.0000 4 7 3.6111 0.6475 0.0006 5 6 4.7762 1.5357 0.0013 6 6 3.6479 -0.6961 0.0070 7 9 4.7577 -1.4665 0.0151 8 6 2.3375 -1.1443 0.0007 9 6 1.8931 -2.5473 0.0008 10 8 1.7099 -3.1274 -1.0524 11 7 1.6893 -3.1895 1.1681 12 6 1.2464 -4.5859 1.1684 13 6 1.0915 -5.0716 2.6109 14 1 0.4190 -4.4041 3.1498 15 6 0.5131 -6.4889 2.6169 16 6 0.3304 -6.9644 4.0600 17 6 1.6929 -6.9954 4.7595 18 7 2.3189 -5.6720 4.6349 19 6 2.7617 -5.0023 5.7442 20 1 2.2901 -5.1712 6.7010 21 6 3.8167 -4.1064 5.6389 22 7 4.6028 -4.1363 4.5836 23 14 4.1209 -2.8582 6.9950 24 1 3.1047 -3.0312 8.0640 25 1 5.4770 -3.0655 7.5636 26 1 4.0231 -1.4860 6.4358 27 6 2.4610 -5.0810 3.2973 28 1 -0.3634 0.0004 1.0276 29 1 -0.3634 0.8897 -0.5143 30 1 -0.3633 -0.8903 -0.5135 31 1 5.0644 1.7560 1.0291 32 1 5.6051 1.0480 -0.5118 33 1 4.5260 2.4636 -0.5128 34 1 1.8351 -2.7268 2.0081 35 1 1.9851 -5.2014 0.6548 36 1 0.2883 -4.6634 0.6543 37 1 1.1967 -7.1600 2.0971 38 1 -0.4517 -6.4891 2.1096 39 1 -0.1022 -7.9648 4.0615 40 1 -0.3337 -6.2795 4.5874 41 1 2.3282 -7.7458 4.2889 42 1 1.5596 -7.2387 5.8136 43 1 5.3403 -3.5106 4.5103 44 1 2.8320 -4.0599 3.3865 45 1 3.1608 -5.6738 2.7083 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001023725227.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:01 Heat of formation + Delta-G solvation = -10.072209 kcal Electronic energy + Delta-G solvation = -28366.932484 eV Core-core repulsion = 24335.215005 eV Total energy + Delta-G solvation = -4031.717479 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.170 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.49974 -42.51396 -40.54103 -39.24033 -36.12512 -35.25470 -34.78622 -32.67178 -31.73093 -31.25702 -30.45334 -27.65194 -27.20225 -26.37464 -23.97940 -23.55522 -22.30736 -21.89996 -21.30621 -20.57730 -19.11410 -18.68571 -18.09560 -17.84644 -17.23661 -17.02213 -16.88758 -16.05342 -15.78380 -15.74872 -15.51622 -15.20493 -14.91756 -14.65271 -14.53763 -14.48438 -14.27571 -14.02560 -13.77537 -13.72636 -13.53343 -13.29037 -13.05574 -12.90997 -12.89684 -12.56501 -12.20204 -12.09298 -11.97970 -11.77207 -11.52867 -11.40235 -11.08278 -11.02292 -10.55156 -10.45184 -10.09696 -9.92207 -8.65317 -7.85943 -5.31733 0.17266 0.83694 1.10538 1.38426 1.43429 1.46771 1.56437 2.27467 2.50470 2.72537 3.24886 3.27062 3.62144 3.71396 3.87171 4.02196 4.09459 4.12545 4.18760 4.19403 4.25243 4.38898 4.52848 4.56671 4.66812 4.73374 4.74935 4.83512 4.85853 4.91178 4.91803 5.06257 5.18559 5.24777 5.30016 5.36517 5.42149 5.48671 5.56887 5.57821 5.68204 5.80610 6.20267 6.39932 6.44187 7.09501 7.16186 7.87950 8.39944 9.18989 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.010709 B = 0.004531 C = 0.003586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2614.117509 B = 6177.751612 C = 7806.113844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.132 3.868 3 N -0.280 5.280 4 N -0.369 5.369 5 C 0.081 3.919 6 C 0.284 3.716 7 F -0.093 7.093 8 C -0.313 4.313 9 C 0.602 3.398 10 O -0.572 6.572 11 N -0.703 5.703 12 C 0.136 3.864 13 C -0.111 4.111 14 H 0.074 0.926 15 C -0.098 4.098 16 C -0.121 4.121 17 C 0.135 3.865 18 N -0.611 5.611 19 C -0.259 4.259 20 H 0.065 0.935 21 C -0.046 4.046 22 N -0.930 5.930 23 Si 0.959 3.041 24 H -0.267 1.267 25 H -0.296 1.296 26 H -0.289 1.289 27 C 0.188 3.812 28 H 0.102 0.898 29 H 0.101 0.899 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.106 0.894 33 H 0.121 0.879 34 H 0.407 0.593 35 H 0.050 0.950 36 H 0.084 0.916 37 H 0.053 0.947 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.058 0.942 41 H 0.008 0.992 42 H 0.051 0.949 43 H 0.247 0.753 44 H 0.060 0.940 45 H -0.015 1.015 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.175 9.079 -8.778 14.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.034 4.034 3 N -0.103 5.103 4 N -0.153 5.153 5 C -0.058 4.058 6 C 0.135 3.865 7 F -0.072 7.072 8 C -0.329 4.329 9 C 0.387 3.613 10 O -0.451 6.451 11 N -0.352 5.352 12 C 0.013 3.987 13 C -0.131 4.131 14 H 0.092 0.908 15 C -0.136 4.136 16 C -0.160 4.160 17 C 0.010 3.990 18 N -0.335 5.335 19 C -0.390 4.390 20 H 0.083 0.917 21 C -0.242 4.242 22 N -0.576 5.576 23 Si 0.788 3.212 24 H -0.191 1.191 25 H -0.223 1.223 26 H -0.216 1.216 27 C 0.062 3.938 28 H 0.120 0.880 29 H 0.120 0.880 30 H 0.101 0.899 31 H 0.114 0.886 32 H 0.124 0.876 33 H 0.140 0.860 34 H 0.242 0.758 35 H 0.069 0.931 36 H 0.102 0.898 37 H 0.072 0.928 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.077 0.923 41 H 0.026 0.974 42 H 0.070 0.930 43 H 0.057 0.943 44 H 0.078 0.922 45 H 0.003 0.997 Dipole moment (debyes) X Y Z Total from point charges -6.948 10.058 -9.511 15.489 hybrid contribution 1.616 -0.358 1.091 1.982 sum -5.332 9.701 -8.420 13.908 Atomic orbital electron populations 1.20469 0.82934 1.05029 1.05117 1.22648 0.98560 0.86991 0.95248 1.77231 0.84531 1.21283 1.27284 1.49004 1.08078 1.02195 1.56022 1.22499 0.82677 0.94816 1.05803 1.17958 0.83260 0.82862 1.02382 1.91670 1.49871 1.71882 1.93760 1.19758 0.91246 0.95537 1.26383 1.17153 0.76282 0.84432 0.83455 1.90742 1.53426 1.68550 1.32413 1.46069 1.67028 1.13833 1.08318 1.21388 0.99883 0.80414 0.97057 1.21905 0.99183 0.98415 0.93615 0.90790 1.21362 1.00941 0.94257 0.97069 1.21860 0.96959 1.01455 0.95692 1.21132 0.93148 0.86328 0.98440 1.44341 1.69614 1.16303 1.03206 1.19525 1.10234 1.19466 0.89751 0.91693 1.25710 0.95445 1.03341 0.99666 1.70207 1.17575 1.38305 1.31525 0.85329 0.77266 0.79132 0.79492 1.19088 1.22315 1.21602 1.20574 0.91518 0.97814 0.83853 0.87980 0.88015 0.89941 0.88604 0.87552 0.86022 0.75791 0.93113 0.89751 0.92823 0.89778 0.89821 0.92296 0.97357 0.93039 0.94342 0.92174 0.99730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.44 10.28 71.24 0.73 -0.71 16 2 C 0.13 3.50 7.26 43.55 0.32 3.82 16 3 N -0.28 -7.39 12.49 -46.64 -0.58 -7.97 16 4 N -0.37 -9.32 3.98 -368.85 -1.47 -10.79 16 5 C 0.08 1.20 11.43 127.77 1.46 2.66 16 6 C 0.28 8.75 8.70 84.36 0.73 9.49 16 7 F -0.09 -3.02 17.31 44.97 0.78 -2.24 16 8 C -0.31 -9.93 5.89 -20.09 -0.12 -10.05 16 9 C 0.60 21.13 7.35 86.59 0.64 21.77 16 10 O -0.57 -23.19 17.11 -4.14 -0.07 -23.26 16 11 N -0.70 -23.54 5.33 -466.61 -2.49 -26.03 16 12 C 0.14 4.42 5.08 86.38 0.44 4.85 16 13 C -0.11 -3.82 2.38 -10.70 -0.03 -3.85 16 14 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 15 C -0.10 -2.91 5.17 30.63 0.16 -2.75 16 16 C -0.12 -3.72 6.09 30.67 0.19 -3.54 16 17 C 0.13 5.46 6.52 86.36 0.56 6.02 16 18 N -0.61 -30.00 3.00 -699.11 -2.09 -32.09 16 19 C -0.26 -13.97 9.58 84.03 0.81 -13.17 16 20 H 0.07 3.43 7.89 -2.91 -0.02 3.41 16 21 C -0.05 -2.51 4.92 84.86 0.42 -2.10 16 22 N -0.93 -53.95 11.20 21.65 0.24 -53.70 16 23 Si 0.96 43.93 29.59 68.60 2.03 45.96 16 24 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 25 H -0.30 -13.73 7.11 99.48 0.71 -13.02 16 26 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 27 C 0.19 8.70 4.38 86.36 0.38 9.08 16 28 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.08 1.58 8.01 -2.38 -0.02 1.56 16 31 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.11 1.28 8.14 -2.38 -0.02 1.26 16 33 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.41 13.75 7.68 -92.71 -0.71 13.04 16 35 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 36 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 37 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 42 H 0.05 2.05 7.93 -2.38 -0.02 2.03 16 43 H 0.25 14.00 8.31 -92.71 -0.77 13.22 16 44 H 0.06 3.09 5.26 -2.39 -0.01 3.08 16 45 H -0.02 -0.80 8.14 -2.39 -0.02 -0.82 16 Total: -1.00 -71.46 375.39 3.32 -68.14 By element: Atomic # 1 Polarization: 20.16 SS G_CDS: 0.29 Total: 20.45 kcal Atomic # 6 Polarization: 14.85 SS G_CDS: 6.68 Total: 21.53 kcal Atomic # 7 Polarization: -124.20 SS G_CDS: -6.39 Total: -130.59 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: -0.07 Total: -23.26 kcal Atomic # 9 Polarization: -3.02 SS G_CDS: 0.78 Total: -2.24 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -71.46 3.32 -68.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023725227.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.068 kcal (2) G-P(sol) polarization free energy of solvation -71.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds