Wall clock time and date at job start Tue Mar 31 2020 14:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30377 * 125.96545 * 2 1 4 4 N 1.39914 * 109.02084 * 180.26433 * 3 2 1 5 5 C 1.46509 * 125.74132 * 179.77562 * 4 3 2 6 6 C 1.34411 * 108.52008 * 359.73994 * 4 3 2 7 7 F 1.35096 * 126.35225 * 180.02562 * 6 4 3 8 8 C 1.38505 * 107.30833 * 359.97438 * 6 4 3 9 9 C 1.47164 * 126.45950 * 179.97438 * 8 6 4 10 10 O 1.21635 * 119.99686 * 90.02344 * 9 8 6 11 11 N 1.34776 * 120.00364 * 269.74535 * 9 8 6 12 12 C 1.46493 * 120.00071 * 180.27260 * 11 9 8 13 13 C 1.53007 * 109.46758 * 180.02562 * 12 11 9 14 14 H 1.08994 * 109.49732 * 305.06385 * 13 12 11 15 15 C 1.53041 * 109.49474 * 185.00255 * 13 12 11 16 16 C 1.53045 * 109.53899 * 178.68739 * 15 13 12 17 17 C 1.53194 * 109.31298 * 61.36343 * 16 15 13 18 18 N 1.46934 * 108.77379 * 305.36825 * 17 16 15 19 19 C 1.36935 * 120.62784 * 233.58607 * 18 17 16 20 20 H 1.07998 * 120.00165 * 151.82885 * 19 18 17 21 21 C 1.38816 * 120.00521 * 331.83256 * 19 18 17 22 22 N 1.31620 * 119.99193 * 343.08495 * 21 19 18 23 23 Si 1.86793 * 120.00203 * 163.08376 * 21 19 18 24 24 H 1.48501 * 109.47149 * 60.00232 * 23 21 19 25 25 H 1.48500 * 109.46953 * 180.02562 * 23 21 19 26 26 H 1.48495 * 109.47586 * 299.99732 * 23 21 19 27 27 C 1.46927 * 118.73940 * 53.61038 * 18 17 16 28 28 H 1.09001 * 109.46970 * 270.16219 * 1 2 3 29 29 H 1.08991 * 109.47254 * 30.16494 * 1 2 3 30 30 H 1.09004 * 109.46967 * 150.17097 * 1 2 3 31 31 H 1.09005 * 109.46728 * 269.96045 * 5 4 3 32 32 H 1.09000 * 109.47155 * 29.95757 * 5 4 3 33 33 H 1.09000 * 109.46838 * 149.96274 * 5 4 3 34 34 H 0.96997 * 119.99634 * 0.27899 * 11 9 8 35 35 H 1.08992 * 109.47384 * 300.00153 * 12 11 9 36 36 H 1.09003 * 109.47028 * 60.00705 * 12 11 9 37 37 H 1.09003 * 109.45937 * 298.70278 * 15 13 12 38 38 H 1.08997 * 109.46349 * 58.67913 * 15 13 12 39 39 H 1.08998 * 109.49828 * 181.31613 * 16 15 13 40 40 H 1.09001 * 109.49344 * 301.37798 * 16 15 13 41 41 H 1.08994 * 109.58552 * 65.15534 * 17 16 15 42 42 H 1.08997 * 109.58554 * 185.58430 * 17 16 15 43 43 H 0.97004 * 119.99215 * 180.02562 * 22 21 19 44 44 H 1.08997 * 109.58326 * 186.60750 * 27 18 17 45 45 H 1.08998 * 109.58564 * 66.17396 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2727 1.0552 0.0000 4 7 3.6111 0.6475 -0.0061 5 6 4.7763 1.5356 -0.0127 6 6 3.6480 -0.6961 -0.0041 7 9 4.7577 -1.4667 -0.0080 8 6 2.3376 -1.1444 0.0039 9 6 1.8932 -2.5474 0.0081 10 8 1.7151 -3.1257 1.0632 11 7 1.6782 -3.1897 -1.1571 12 6 1.2301 -4.5844 -1.1528 13 6 1.0637 -5.0711 -2.5938 14 1 0.3923 -4.3998 -3.1292 15 6 0.4774 -6.4847 -2.5910 16 6 0.2800 -6.9598 -4.0324 17 6 1.6367 -7.0004 -4.7428 18 7 2.2724 -5.6811 -4.6239 19 6 2.7108 -5.0151 -5.7371 20 1 2.7472 -3.9357 -5.7413 21 6 3.1084 -5.7272 -6.8604 22 7 3.3845 -7.0103 -6.7624 23 14 3.2515 -4.8643 -8.5110 24 1 4.2469 -3.7668 -8.4112 25 1 3.6900 -5.8386 -9.5424 26 1 1.9310 -4.3019 -8.8918 27 6 2.4293 -5.0903 -3.2878 28 1 -0.3633 0.0029 1.0277 29 1 -0.3633 0.8884 -0.5163 30 1 -0.3633 -0.8916 -0.5112 31 1 5.0606 1.7542 -1.0421 32 1 4.5280 2.4645 0.5007 33 1 5.6070 1.0488 0.4982 34 1 1.8202 -2.7285 -1.9985 35 1 1.9701 -5.2022 -0.6442 36 1 0.2755 -4.6577 -0.6317 37 1 1.1608 -7.1602 -2.0764 38 1 -0.4833 -6.4784 -2.0762 39 1 -0.1593 -7.9573 -4.0297 40 1 -0.3842 -6.2712 -4.5547 41 1 2.2706 -7.7548 -4.2769 42 1 1.4908 -7.2422 -5.7955 43 1 3.6627 -7.5078 -7.5473 44 1 2.8063 -4.0718 -3.3807 45 1 3.1278 -5.6890 -2.7033 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023725228.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:07 Heat of formation + Delta-G solvation = 11.469604 kcal Electronic energy + Delta-G solvation = -27835.330503 eV Core-core repulsion = 23804.547147 eV Total energy + Delta-G solvation = -4030.783356 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.170 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.50667 -41.60564 -39.32920 -37.71882 -34.76093 -34.46050 -32.97718 -30.98019 -30.44130 -30.22305 -29.57878 -26.62231 -25.37362 -25.12711 -22.68819 -22.03351 -21.04245 -20.85380 -20.21336 -19.10739 -18.10273 -17.14760 -16.98527 -16.55609 -16.28474 -15.80034 -15.01975 -14.94324 -14.82956 -14.42937 -14.09509 -13.88064 -13.77018 -13.61446 -13.45802 -13.39637 -12.95580 -12.77635 -12.68118 -12.41541 -12.32191 -12.18750 -12.14287 -11.29948 -11.14497 -11.01850 -10.71569 -10.50870 -10.25206 -10.18399 -10.05354 -9.89877 -9.61419 -9.56519 -9.42581 -8.96705 -8.91276 -8.47180 -6.67708 -5.80034 -3.23025 1.12358 1.64422 2.02051 2.54502 3.35569 3.36308 3.42575 3.43252 3.59545 4.08437 4.46948 4.49101 4.70196 4.80337 4.90033 4.98078 5.00711 5.14500 5.30504 5.35399 5.44045 5.46431 5.48227 5.56588 5.62737 5.84004 5.95826 6.00831 6.08347 6.24674 6.33547 6.38123 6.40528 6.51846 6.59998 6.70700 6.78189 6.86439 6.97184 7.09460 7.39877 7.59744 7.66964 7.77322 8.27027 8.43772 9.19981 9.83420 10.40533 11.28255 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.012602 B = 0.003366 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2221.275209 B = 8316.590458 C = 9544.595400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.133 3.867 3 N -0.272 5.272 4 N -0.375 5.375 5 C 0.092 3.908 6 C 0.297 3.703 7 F -0.086 7.086 8 C -0.289 4.289 9 C 0.597 3.403 10 O -0.535 6.535 11 N -0.712 5.712 12 C 0.126 3.874 13 C -0.118 4.118 14 H 0.074 0.926 15 C -0.099 4.099 16 C -0.142 4.142 17 C 0.169 3.831 18 N -0.591 5.591 19 C -0.255 4.255 20 H 0.064 0.936 21 C 0.004 3.996 22 N -0.901 5.901 23 Si 0.902 3.098 24 H -0.283 1.283 25 H -0.290 1.290 26 H -0.284 1.284 27 C 0.154 3.846 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.100 0.900 33 H 0.092 0.908 34 H 0.405 0.595 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.057 0.943 38 H 0.048 0.952 39 H 0.049 0.951 40 H 0.054 0.946 41 H 0.017 0.983 42 H 0.086 0.914 43 H 0.254 0.746 44 H 0.049 0.951 45 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.983 13.829 13.210 19.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.034 4.034 3 N -0.095 5.095 4 N -0.160 5.160 5 C -0.048 4.048 6 C 0.149 3.851 7 F -0.065 7.065 8 C -0.306 4.306 9 C 0.380 3.620 10 O -0.411 6.411 11 N -0.362 5.362 12 C 0.003 3.997 13 C -0.138 4.138 14 H 0.092 0.908 15 C -0.137 4.137 16 C -0.181 4.181 17 C 0.043 3.957 18 N -0.314 5.314 19 C -0.384 4.384 20 H 0.081 0.919 21 C -0.195 4.195 22 N -0.546 5.546 23 Si 0.731 3.269 24 H -0.209 1.209 25 H -0.216 1.216 26 H -0.210 1.210 27 C 0.027 3.973 28 H 0.105 0.895 29 H 0.102 0.898 30 H 0.102 0.898 31 H 0.104 0.896 32 H 0.118 0.882 33 H 0.110 0.890 34 H 0.240 0.760 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.075 0.925 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.036 0.964 42 H 0.104 0.896 43 H 0.064 0.936 44 H 0.068 0.932 45 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -2.809 14.596 13.808 20.288 hybrid contribution 0.796 -0.363 -1.314 1.578 sum -2.013 14.233 12.495 19.046 Atomic orbital electron populations 1.20327 0.85136 1.04217 1.03997 1.22196 0.97201 0.87975 0.95997 1.77299 0.84134 1.21178 1.26907 1.48667 1.07310 1.02625 1.57352 1.22086 0.83606 0.94594 1.04521 1.17801 0.83441 0.81834 1.02002 1.91685 1.49606 1.71484 1.93692 1.19716 0.90354 0.95758 1.24728 1.16990 0.77144 0.83863 0.83989 1.90792 1.51511 1.67599 1.31242 1.46088 1.67728 1.14095 1.08324 1.21522 0.99677 0.80516 0.98027 1.21957 1.01050 0.97572 0.93242 0.90784 1.21340 0.99244 0.95286 0.97874 1.22172 1.01206 0.99292 0.95412 1.20797 0.88143 0.86261 1.00458 1.44028 1.67681 1.19060 1.00586 1.19112 1.37768 0.90327 0.91231 0.91861 1.25036 0.98982 0.96165 0.99309 1.70030 1.48152 1.07671 1.28709 0.86388 0.77954 0.78623 0.83898 1.20945 1.21609 1.21016 1.20901 0.91973 0.97001 0.87443 0.89487 0.89837 0.89755 0.89619 0.88159 0.88977 0.76033 0.91428 0.91669 0.92460 0.93376 0.93191 0.92755 0.96449 0.89603 0.93572 0.93229 0.96322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.68 10.28 36.01 0.37 -0.31 16 2 C 0.13 1.57 7.26 -82.01 -0.60 0.97 16 3 N -0.27 -3.24 12.49 33.91 0.42 -2.82 16 4 N -0.37 -4.08 3.98 -67.93 -0.27 -4.35 16 5 C 0.09 0.57 11.43 59.85 0.68 1.25 16 6 C 0.30 3.77 8.70 -16.32 -0.14 3.63 16 7 F -0.09 -1.10 17.31 2.25 0.04 -1.06 16 8 C -0.29 -3.89 5.89 -104.97 -0.62 -4.51 16 9 C 0.60 8.98 7.35 -12.64 -0.09 8.89 16 10 O -0.53 -9.77 17.11 5.25 0.09 -9.68 16 11 N -0.71 -9.87 5.33 -61.47 -0.33 -10.20 16 12 C 0.13 1.83 5.07 -4.04 -0.02 1.80 16 13 C -0.12 -1.90 2.37 -90.49 -0.21 -2.12 16 14 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 15 C -0.10 -1.60 5.17 -26.69 -0.14 -1.74 16 16 C -0.14 -2.62 6.08 -26.61 -0.16 -2.79 16 17 C 0.17 3.97 5.30 -3.71 -0.02 3.95 16 18 N -0.59 -14.45 2.99 -172.32 -0.52 -14.96 16 19 C -0.25 -6.85 9.58 -15.06 -0.14 -6.99 16 20 H 0.06 1.66 7.88 -52.49 -0.41 1.24 16 21 C 0.00 0.11 4.92 -17.43 -0.09 0.02 16 22 N -0.90 -25.93 11.20 55.49 0.62 -25.31 16 23 Si 0.90 21.39 29.59 -169.99 -5.03 16.36 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 27 C 0.15 3.09 5.60 -3.71 -0.02 3.07 16 28 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.08 0.71 8.01 -51.93 -0.42 0.30 16 31 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.40 5.23 7.69 -40.82 -0.31 4.92 16 35 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.09 2.26 6.06 -51.93 -0.31 1.95 16 43 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 44 H 0.05 0.97 7.14 -51.93 -0.37 0.59 16 45 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 375.40 15.07 5.66 5.66 Total: -1.00 -32.97 375.40 -7.39 -40.37 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -6.88 Total: 0.85 kcal Atomic # 6 Polarization: 6.33 SS G_CDS: -1.20 Total: 5.13 kcal Atomic # 7 Polarization: -57.56 SS G_CDS: -0.07 Total: -57.63 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.09 Total: -9.68 kcal Atomic # 9 Polarization: -1.10 SS G_CDS: 0.04 Total: -1.06 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.03 Total: 16.36 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.97 -7.39 -40.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023725228.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.838 kcal (2) G-P(sol) polarization free energy of solvation -32.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds