Wall clock time and date at job start Tue Mar 31 2020 14:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30377 * 125.96545 * 2 1 4 4 N 1.39914 * 109.02084 * 180.26433 * 3 2 1 5 5 C 1.46509 * 125.74132 * 179.77562 * 4 3 2 6 6 C 1.34411 * 108.52008 * 359.73994 * 4 3 2 7 7 F 1.35096 * 126.35225 * 180.02562 * 6 4 3 8 8 C 1.38505 * 107.30833 * 359.97438 * 6 4 3 9 9 C 1.47164 * 126.45950 * 179.97438 * 8 6 4 10 10 O 1.21635 * 119.99686 * 90.02344 * 9 8 6 11 11 N 1.34776 * 120.00364 * 269.74535 * 9 8 6 12 12 C 1.46493 * 120.00071 * 180.27260 * 11 9 8 13 13 C 1.53007 * 109.46758 * 180.02562 * 12 11 9 14 14 H 1.08994 * 109.49732 * 305.06385 * 13 12 11 15 15 C 1.53041 * 109.49474 * 185.00255 * 13 12 11 16 16 C 1.53045 * 109.53899 * 178.68739 * 15 13 12 17 17 C 1.53194 * 109.31298 * 61.36343 * 16 15 13 18 18 N 1.46934 * 108.77379 * 305.36825 * 17 16 15 19 19 C 1.36935 * 120.62784 * 233.58607 * 18 17 16 20 20 H 1.07998 * 120.00165 * 151.82885 * 19 18 17 21 21 C 1.38816 * 120.00521 * 331.83256 * 19 18 17 22 22 N 1.31620 * 119.99193 * 343.08495 * 21 19 18 23 23 Si 1.86793 * 120.00203 * 163.08376 * 21 19 18 24 24 H 1.48501 * 109.47149 * 60.00232 * 23 21 19 25 25 H 1.48500 * 109.46953 * 180.02562 * 23 21 19 26 26 H 1.48495 * 109.47586 * 299.99732 * 23 21 19 27 27 C 1.46927 * 118.73940 * 53.61038 * 18 17 16 28 28 H 1.09001 * 109.46970 * 270.16219 * 1 2 3 29 29 H 1.08991 * 109.47254 * 30.16494 * 1 2 3 30 30 H 1.09004 * 109.46967 * 150.17097 * 1 2 3 31 31 H 1.09005 * 109.46728 * 269.96045 * 5 4 3 32 32 H 1.09000 * 109.47155 * 29.95757 * 5 4 3 33 33 H 1.09000 * 109.46838 * 149.96274 * 5 4 3 34 34 H 0.96997 * 119.99634 * 0.27899 * 11 9 8 35 35 H 1.08992 * 109.47384 * 300.00153 * 12 11 9 36 36 H 1.09003 * 109.47028 * 60.00705 * 12 11 9 37 37 H 1.09003 * 109.45937 * 298.70278 * 15 13 12 38 38 H 1.08997 * 109.46349 * 58.67913 * 15 13 12 39 39 H 1.08998 * 109.49828 * 181.31613 * 16 15 13 40 40 H 1.09001 * 109.49344 * 301.37798 * 16 15 13 41 41 H 1.08994 * 109.58552 * 65.15534 * 17 16 15 42 42 H 1.08997 * 109.58554 * 185.58430 * 17 16 15 43 43 H 0.97004 * 119.99215 * 180.02562 * 22 21 19 44 44 H 1.08997 * 109.58326 * 186.60750 * 27 18 17 45 45 H 1.08998 * 109.58564 * 66.17396 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2727 1.0552 0.0000 4 7 3.6111 0.6475 -0.0061 5 6 4.7763 1.5356 -0.0127 6 6 3.6480 -0.6961 -0.0041 7 9 4.7577 -1.4667 -0.0080 8 6 2.3376 -1.1444 0.0039 9 6 1.8932 -2.5474 0.0081 10 8 1.7151 -3.1257 1.0632 11 7 1.6782 -3.1897 -1.1571 12 6 1.2301 -4.5844 -1.1528 13 6 1.0637 -5.0711 -2.5938 14 1 0.3923 -4.3998 -3.1292 15 6 0.4774 -6.4847 -2.5910 16 6 0.2800 -6.9598 -4.0324 17 6 1.6367 -7.0004 -4.7428 18 7 2.2724 -5.6811 -4.6239 19 6 2.7108 -5.0151 -5.7371 20 1 2.7472 -3.9357 -5.7413 21 6 3.1084 -5.7272 -6.8604 22 7 3.3845 -7.0103 -6.7624 23 14 3.2515 -4.8643 -8.5110 24 1 4.2469 -3.7668 -8.4112 25 1 3.6900 -5.8386 -9.5424 26 1 1.9310 -4.3019 -8.8918 27 6 2.4293 -5.0903 -3.2878 28 1 -0.3633 0.0029 1.0277 29 1 -0.3633 0.8884 -0.5163 30 1 -0.3633 -0.8916 -0.5112 31 1 5.0606 1.7542 -1.0421 32 1 4.5280 2.4645 0.5007 33 1 5.6070 1.0488 0.4982 34 1 1.8202 -2.7285 -1.9985 35 1 1.9701 -5.2022 -0.6442 36 1 0.2755 -4.6577 -0.6317 37 1 1.1608 -7.1602 -2.0764 38 1 -0.4833 -6.4784 -2.0762 39 1 -0.1593 -7.9573 -4.0297 40 1 -0.3842 -6.2712 -4.5547 41 1 2.2706 -7.7548 -4.2769 42 1 1.4908 -7.2422 -5.7955 43 1 3.6627 -7.5078 -7.5473 44 1 2.8063 -4.0718 -3.3807 45 1 3.1278 -5.6890 -2.7033 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001023725228.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:05 Heat of formation + Delta-G solvation = -10.029606 kcal Electronic energy + Delta-G solvation = -27836.262779 eV Core-core repulsion = 23804.547147 eV Total energy + Delta-G solvation = -4031.715631 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.170 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.48552 -42.50066 -40.55247 -39.25655 -36.23986 -35.24147 -34.63552 -32.31855 -32.19703 -31.27332 -30.42987 -27.59062 -27.20369 -26.34092 -23.92307 -23.56700 -22.40669 -21.89668 -21.31045 -20.59155 -19.11727 -18.61696 -18.07883 -17.82558 -17.21115 -17.00117 -16.81756 -16.26255 -15.76295 -15.73609 -15.50382 -15.19628 -14.95553 -14.65151 -14.51286 -14.47557 -14.25174 -14.00077 -13.74798 -13.70048 -13.49579 -13.27780 -13.03596 -13.00925 -12.84746 -12.47841 -12.30278 -12.06687 -11.97011 -11.80126 -11.55452 -11.40733 -11.11147 -11.01760 -10.51807 -10.43841 -10.11093 -9.90705 -8.66277 -7.86037 -5.31989 0.19633 0.85776 1.11722 1.39596 1.47028 1.49549 1.56067 2.25125 2.51646 2.72994 3.27138 3.28729 3.60691 3.72886 3.89026 4.01179 4.03888 4.09098 4.13330 4.22227 4.28578 4.44328 4.56796 4.60237 4.64582 4.73398 4.76493 4.78539 4.88128 4.90738 4.93517 5.03296 5.13732 5.23918 5.31482 5.35660 5.39925 5.48237 5.58290 5.59119 5.68323 5.80713 6.22732 6.39595 6.46035 7.11566 7.16112 7.87571 8.39589 9.19978 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.012602 B = 0.003366 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2221.275209 B = 8316.590458 C = 9544.595400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.132 3.868 3 N -0.281 5.281 4 N -0.368 5.368 5 C 0.080 3.920 6 C 0.287 3.713 7 F -0.090 7.090 8 C -0.312 4.312 9 C 0.602 3.398 10 O -0.571 6.571 11 N -0.705 5.705 12 C 0.136 3.864 13 C -0.099 4.099 14 H 0.080 0.920 15 C -0.096 4.096 16 C -0.130 4.130 17 C 0.172 3.828 18 N -0.609 5.609 19 C -0.263 4.263 20 H 0.068 0.932 21 C -0.050 4.050 22 N -0.936 5.936 23 Si 0.965 3.035 24 H -0.276 1.276 25 H -0.296 1.296 26 H -0.276 1.276 27 C 0.152 3.848 28 H 0.096 0.904 29 H 0.100 0.900 30 H 0.086 0.914 31 H 0.099 0.901 32 H 0.117 0.883 33 H 0.107 0.893 34 H 0.410 0.590 35 H 0.057 0.943 36 H 0.083 0.917 37 H 0.054 0.946 38 H 0.084 0.916 39 H 0.069 0.931 40 H 0.054 0.946 41 H -0.008 1.008 42 H 0.051 0.949 43 H 0.249 0.751 44 H 0.052 0.948 45 H 0.004 0.996 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.151 15.716 13.795 21.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.035 4.035 3 N -0.105 5.105 4 N -0.153 5.153 5 C -0.058 4.058 6 C 0.138 3.862 7 F -0.070 7.070 8 C -0.328 4.328 9 C 0.387 3.613 10 O -0.450 6.450 11 N -0.355 5.355 12 C 0.012 3.988 13 C -0.120 4.120 14 H 0.098 0.902 15 C -0.135 4.135 16 C -0.169 4.169 17 C 0.047 3.953 18 N -0.332 5.332 19 C -0.393 4.393 20 H 0.086 0.914 21 C -0.245 4.245 22 N -0.582 5.582 23 Si 0.793 3.207 24 H -0.202 1.202 25 H -0.222 1.222 26 H -0.202 1.202 27 C 0.026 3.974 28 H 0.114 0.886 29 H 0.119 0.881 30 H 0.104 0.896 31 H 0.118 0.882 32 H 0.136 0.864 33 H 0.125 0.875 34 H 0.246 0.754 35 H 0.076 0.924 36 H 0.101 0.899 37 H 0.073 0.927 38 H 0.102 0.898 39 H 0.088 0.912 40 H 0.073 0.927 41 H 0.010 0.990 42 H 0.069 0.931 43 H 0.058 0.942 44 H 0.070 0.930 45 H 0.022 0.978 Dipole moment (debyes) X Y Z Total from point charges -3.980 16.527 14.399 22.278 hybrid contribution 1.243 -0.917 -1.464 2.128 sum -2.737 15.610 12.935 20.457 Atomic orbital electron populations 1.20459 0.83217 1.05138 1.04858 1.22614 0.98428 0.87147 0.95272 1.77275 0.84632 1.21323 1.27230 1.49032 1.08022 1.02351 1.55870 1.22508 0.82605 0.94744 1.05973 1.17890 0.83180 0.82736 1.02381 1.91668 1.49750 1.71769 1.93774 1.19714 0.91201 0.95340 1.26561 1.17150 0.76291 0.84348 0.83489 1.90769 1.53227 1.68585 1.32406 1.46039 1.67170 1.13853 1.08425 1.21385 1.00268 0.80563 0.96587 1.21719 0.98321 0.98166 0.93780 0.90192 1.21339 1.01063 0.94728 0.96323 1.21998 0.97788 1.00727 0.96364 1.20644 0.90445 0.85426 0.98804 1.44300 1.68015 1.19244 1.01666 1.19488 1.36794 0.90816 0.92236 0.91415 1.25792 0.99399 0.96816 1.02535 1.70195 1.49748 1.09123 1.29104 0.85375 0.78134 0.77466 0.79677 1.20183 1.22219 1.20234 1.21024 0.94268 0.96408 0.85686 0.88581 0.88142 0.89565 0.88220 0.86419 0.87502 0.75386 0.92421 0.89927 0.92710 0.89766 0.91217 0.92725 0.99026 0.93058 0.94192 0.92972 0.97766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.20 10.28 71.24 0.73 -0.47 16 2 C 0.13 2.91 7.26 43.55 0.32 3.23 16 3 N -0.28 -6.23 12.49 -46.64 -0.58 -6.81 16 4 N -0.37 -7.45 3.98 -368.83 -1.47 -8.92 16 5 C 0.08 0.82 11.43 127.77 1.46 2.29 16 6 C 0.29 7.05 8.70 84.36 0.73 7.79 16 7 F -0.09 -2.28 17.31 44.97 0.78 -1.50 16 8 C -0.31 -8.12 5.89 -20.09 -0.12 -8.23 16 9 C 0.60 17.62 7.35 86.59 0.64 18.26 16 10 O -0.57 -20.50 17.11 -4.14 -0.07 -20.57 16 11 N -0.70 -18.60 5.33 -466.63 -2.49 -21.09 16 12 C 0.14 3.66 5.07 86.38 0.44 4.10 16 13 C -0.10 -3.03 2.37 -10.71 -0.03 -3.05 16 14 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 15 C -0.10 -2.87 5.17 30.62 0.16 -2.72 16 16 C -0.13 -4.63 6.08 30.67 0.19 -4.44 16 17 C 0.17 8.25 5.30 86.36 0.46 8.70 16 18 N -0.61 -30.03 2.99 -699.09 -2.09 -32.12 16 19 C -0.26 -14.24 9.58 84.03 0.81 -13.43 16 20 H 0.07 3.52 7.88 -2.91 -0.02 3.50 16 21 C -0.05 -2.77 4.92 84.86 0.42 -2.36 16 22 N -0.94 -55.42 11.20 21.65 0.24 -55.17 16 23 Si 0.97 44.35 29.59 68.60 2.03 46.38 16 24 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 25 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 26 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 27 C 0.15 6.05 5.60 86.36 0.48 6.54 16 28 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.09 1.29 8.01 -2.38 -0.02 1.27 16 31 H 0.10 0.78 8.14 -2.38 -0.02 0.76 16 32 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.41 10.05 7.69 -92.71 -0.71 9.33 16 35 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 40 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 41 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 42 H 0.05 2.79 6.06 -2.39 -0.01 2.78 16 43 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 44 H 0.05 2.01 7.14 -2.39 -0.02 1.99 16 45 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 Total: -1.00 -72.29 375.40 3.32 -68.96 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: 0.29 Total: 14.64 kcal Atomic # 6 Polarization: 9.52 SS G_CDS: 6.68 Total: 16.20 kcal Atomic # 7 Polarization: -117.73 SS G_CDS: -6.39 Total: -124.11 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: -0.07 Total: -20.57 kcal Atomic # 9 Polarization: -2.28 SS G_CDS: 0.78 Total: -1.50 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -72.29 3.32 -68.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023725228.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.935 kcal (2) G-P(sol) polarization free energy of solvation -72.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds